cluster # 8362

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Schistosoma mansoni
cluster # 8362 cluster # 8362 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8362#0 length = 1118 sequences # 2

consensus_8362#1 length = 935 sequences # 3
consensus_8362#2 length = 131 sequences # 1

consensusID : consensus_8362#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1118
fasta sequence

                              [TAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTTCATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGAAGATAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAACCATAAAAGAAGAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAGAAAATTATCAAAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGCGCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTAACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAACGTGTATACATATAAAATCGTTTTATTTTTTATCTGTTTTG-CAATGTAGATTGATATTAGTAGGTGAGAAAGGATTGAGAAGCATATATTTCGAATAAAACTATGCATTTTCAACTCCTTGTAGTAATGATTCTTTATCTTGACTTTTTGGATAAGTTTTCATGGGAATATTTGATTTACGCTTCGACTGGGATCTTTGTACTCGTGTCACTCCATCTGTTAAACCAGACTGAGACCATATATCTTCCATTTGCATACGTTCCATCACAGTATCTTCGTCTTCATCTTCATCAGAAACAAGCAAATAAGGATTATCATTAACTGGACGAAATTCATAACCAACTGAAATAAAGAAAATGAAAGTCACCGTTTCCTTGAATAATTCCACAAGCCATGAATACGAATAGACTACAGTGATTGTCATCAGGTAGACAATGACACGTGTAAAATACACGTAACAAATAACCAGAATGTAGAAATGACGGAATAACCGCAGATTACGCAGATTTATAGCTGCTTTACCATCCGTTTGAGAAGCTGCTTTTAAAAGTTTAATAGACCAAACGACAGGGAATAAAATTGCTCCACAACATGCTAAATCGACAAAAATGAAAATCTCTTTCNCATGTAGCATAACGAGCCGCACCGGCTTCAGACTCTTCAATAATTATAGTAGCCCTCGTGCCGAATNCTTGGCTCGAG]

[+] EMBL CD074363             [TAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTTCATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGAAGATAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAACCATAAAAGAAGAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAGAAAATTATCAAAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGCGCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTAACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAACGTGTATACATATAAAATCGTTTTATTTTTTATCTGTTTTG CAATGTAGATTGATATTAGTAGGTGAGAAAGGATTGAGAAGCATATATTTCGAATAAAACTATGCATTTTCAACTCCTTGTAGTAATGATTCTTTATCTTGACTTTTTGGATAAGTTTTCATGGGAATATTTGATTTACGCTTCGACTGGGATCTTTGTACTCGTGTCACTCCATCTGTTAAACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD080451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCTGTNNTGNCAATGTAGATTGATATTAGTAGGTGAGAAAGGATTGAGAAGCATATATTTCGAATANAACTATGCATTTTCAACTCCTTGTAGTAATGATTCTTTATCTTGACTTTTTGGATAAGTTTTCATGGGAATATTTGATTTACGCTTCGACTGGGATCTTTGTACTCGTGTCACTCCATCTGTTAAACCAGACTGAGACCATATATCTTCCATTTGCATACGTTCCATCACAGTATCTTCGTCTTCATCTTCATCAGAAACAAGCAAATAAGGATTATCATTAACTGGACGAAATTCATAACCAACTGAAATAAAGAAAATGAAAGTCACCGTTTCCTTGAATAATTCCACAAGCCATGAATACGAATAGACTACAGTGATTGTCATCAGGTAGACAATGACACGTGTAAAATACACGTAACAAATAACCAGAATGTAGAAATGACGGAATAACCGCAGATTACGCAGATTTATAGCTGCTTTACCATCCGTTTGAGAAGCTGCTTTTAAAAGTTTAATAGACCAAACGACAGGGAATAAAATTGCTCCACAACATGCTAAATCGACAAAAATGAAAATCTCTTTCNCATGTAGCATAACGAGCCGCACCGGCTTCAGACTCTTCAATAATTATAGTAGCCCTCGTGCCGAATNCTTGGCTCGAG]




>consensus_8362#0
TAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTT
CATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGAAGA
TAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAACCATAAAAGAA
GAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAG
AAAATTATCAAAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGC
GCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTA
ACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAACGTG
TATACATATAAAATCGTTTTATTTTTTATCTGTTTTGCAATGTAGATTGATATTAGTAGG
TGAGAAAGGATTGAGAAGCATATATTTCGAATAAAACTATGCATTTTCAACTCCTTGTAG
TAATGATTCTTTATCTTGACTTTTTGGATAAGTTTTCATGGGAATATTTGATTTACGCTT
CGACTGGGATCTTTGTACTCGTGTCACTCCATCTGTTAAACCAGACTGAGACCATATATC
TTCCATTTGCATACGTTCCATCACAGTATCTTCGTCTTCATCTTCATCAGAAACAAGCAA
ATAAGGATTATCATTAACTGGACGAAATTCATAACCAACTGAAATAAAGAAAATGAAAGT
CACCGTTTCCTTGAATAATTCCACAAGCCATGAATACGAATAGACTACAGTGATTGTCAT
CAGGTAGACAATGACACGTGTAAAATACACGTAACAAATAACCAGAATGTAGAAATGACG
GAATAACCGCAGATTACGCAGATTTATAGCTGCTTTACCATCCGTTTGAGAAGCTGCTTT
TAAAAGTTTAATAGACCAAACGACAGGGAATAAAATTGCTCCACAACATGCTAAATCGAC
AAAAATGAAAATCTCTTTCNCATGTAGCATAACGAGCCGCACCGGCTTCAGACTCTTCAA
TAATTATAGTAGCCCTCGTGCCGAATNCTTGGCTCGAG

consensusID : consensus_8362#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 935
fasta sequence

                              [TCTACTTAACTACTTTTATTTTTTGTTGCAAACAAGGAAATGAATTAGCGGTCTAAAACAGGAAACGGAAAAATAAAAGTCTGCACTGCAAGTTATCTTATTACAGGATTTAGTGATAGTAACGATCAATAATAACGATAATAATATTCAAATAACCAAAGCCGGGGGTAAAACAGGATTAAACTAATCATTTTGATTTAAACAATTTACTGTTGTCTAAAACAATTAGTTCCTTTGATAAATTTGGATAATGCGATGAAAAGACGAAGGTTATTAAAATTATGTGATCTCTTTGCGCAATACATTTTGGATAATCTGATCACATATGTACGTAAAAACGATGTATTGTGTCAGTATATCACATAATTCTGATAACCATCTTTTTATCGCAATATCCAAATTTATCACTGTCTCTCGTTTTTATGGGGGAGTATTATTCAAAAATGATTAAGAAAAGGAATTAAACTTTAAATTCACTCAATATAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTTCATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGAAGATAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAGCCATAAAAGAAGAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAGAAAATTATCAGAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGCGCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTAACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAACGTGTATACACCTCGTGCCGAATTNTTGGCTCGAGG]

[+] EMBL CD076145             [TCTACTTAACTACTTTTATTTTTTGTTGCAAACAAGGAAATGAATTAGCGGTCTAAAACAGGAAACGGAAAAATAAAAGTCTGCACTGCAAGTTATCTTATTACAGGATTTAGTGATAGTAACGATCAATAATAACGATAATAATATTCAAATAACCAAAGCCGGGGGTAAAACAGGATTAAACTAATCATTTTGATTTAAACAATTTACTGTTGTCTAAAACAATTAGTTCCTTTGATAAATTTGGATAATGCGATGAAAAGACGAAGGTTATTAAAATTATGTGATCTCTTTGCGCAATACATTTTGGATAATCTGATCACATATGTACGTAAAAACGATGTATTGTGTCAGTATATCACATAATTCTGATAACCATCTTTTTATCGCAATATCCAAATTTATCACTGTCTCTCGTTTTTATGGGGGAGTATTATTCAAAAATGATTAAGAAAAGGAATTAAACTTTAAATTCACTCAATATAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTTCATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTT                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD082547             [                                                                                                                                                                                                                                                            GCGATGAGAAGACGAAGGTTATTAGAATTATGTGATCTCTNTGCGCAATACATTTTGGATAATCTGATCACATATGTACGTAAAAACGATGTATTGTGTCAGTATATCACATAATTCTGATAACCATCTTTTTATCGCAATATCCAAATTTATCACTGTCTCTCGTTTTTATGGTGGAGTATTATTCAAAAATGATTAAGAAAAGGAATTAAACTTTAAATTCACTCAATATAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTTCATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGAAGATAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAGCCATAAAAGAAGAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAGAAAATTATCAGAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGCGCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTAACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAACGTGTATACACCTCGTGCCGAATTNTTGGCTCGAGG]
[+] EMBL CD143484             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAGAAAATTATCAGAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGCGCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTAACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGC                                       ]




>consensus_8362#1
TCTACTTAACTACTTTTATTTTTTGTTGCAAACAAGGAAATGAATTAGCGGTCTAAAACA
GGAAACGGAAAAATAAAAGTCTGCACTGCAAGTTATCTTATTACAGGATTTAGTGATAGT
AACGATCAATAATAACGATAATAATATTCAAATAACCAAAGCCGGGGGTAAAACAGGATT
AAACTAATCATTTTGATTTAAACAATTTACTGTTGTCTAAAACAATTAGTTCCTTTGATA
AATTTGGATAATGCGATGAAAAGACGAAGGTTATTAAAATTATGTGATCTCTTTGCGCAA
TACATTTTGGATAATCTGATCACATATGTACGTAAAAACGATGTATTGTGTCAGTATATC
ACATAATTCTGATAACCATCTTTTTATCGCAATATCCAAATTTATCACTGTCTCTCGTTT
TTATGGGGGAGTATTATTCAAAAATGATTAAGAAAAGGAATTAAACTTTAAATTCACTCA
ATATAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGT
GTTCATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGA
AGATAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAGCCATAAAA
GAAGAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGAT
CAGAAAATTATCAGAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACA
CGCGCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAG
GTAACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAAC
GTGTATACACCTCGTGCCGAATTNTTGGCTCGAGG

consensusID : consensus_8362#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 131
fasta sequence

                              [CTAAATCGACAAAAATGAAAATCTCTTTCCATGTAGCATAACGAGCCGGACCGGCTTCAGACTCTTCAATAATTATAGTAGCAATATTGGCTAAAACTTGAAGAGGTACTACAATCAGGAACACATTACGT]

[+] EMBL CD061082             [CTAAATCGACAAAAATGAAAATCTCTTTCCATGTAGCATAACGAGCCGGACCGGCTTCAGACTCTTCAATAATTATAGTAGCAATATTGGCTAAAACTTGAAGAGGTACTACAATCAGGAACACATTACGT]




>consensus_8362#2
CTAAATCGACAAAAATGAAAATCTCTTTCCATGTAGCATAACGAGCCGGACCGGCTTCAG
ACTCTTCAATAATTATAGTAGCAATATTGGCTAAAACTTGAAGAGGTACTACAATCAGGA
ACACATTACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8362#0      TAATGATTAGTTTATATGCATTGTGTGTGCTTTATTTAAGGATGACAAGATAGATGTGTT 60
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      ------------------------------------------------------------
                                                                                  

consensus_8362#0      CATTTTCCTTAAAGGTTTGTTCTGAAATGATAAATGTTATTTATATGAAAGAACAGAAGA 120
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      ------------------------------------------------------------
                                                                                  

consensus_8362#0      TAGGGAAGGCCTCGCATATACGAACATAATCGTATGAGAAAAATAATAACCATAAAAGAA 180
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      ------------------------------------------------------------
                                                                                  

consensus_8362#0      GAATCGGTGTGTACAAAGTGTCTGTTAGGAAAACAACATGAGTGAATATAAGAAGATCAG 240
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      --------------------------------TCTACTTAACTACTTTTATTTTTTGTTG 28
                                                                                  

consensus_8362#0      AAAATTATCAAAAGTGTTTTTGGGAGGGAGGGGAAAGAGGGATGAATTACCCATACACGC 300
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      CAAACAAGGAAATGAATTAGCGGTCTAAAACAGGAAACGGAAAAATAAAAGTCTGCACTG 88
                                                                                  

consensus_8362#0      GCATCTACACCTGGATATTTACTATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTA 360
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      CAAGTTATCTTATTACAGGATTTAGTGATAGTAACGATCAATAATAACGATAATAATATT 148
                                                                                  

consensus_8362#0      ACCAAAGGAAATCACAGTTGGTAGCGATAGAAGTAGTAATAATAGTACTACGCAAACGTG 420
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      CAAATAACCAAAGCCGGGGGTAAAACAGGATTAAACTAATCATTTTGATTTAAACAATTT 208
                                                                                  

consensus_8362#0      TATACATATAAAATCGTTTTATTTTTTATCTGTTTTGCAATGTAGATTGATATTAGTAGG 480
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      ACTGTTGTCTAAAACAATTAGTTCCTTTGATAAATTTGGATAATGCGATGAAAAGACGAA 268
                                                                                  

consensus_8362#0      TGAGAAAGGATTGAGAAGCATATATTTCGAATAAAACTATGCATTTTCAACTCCTTGTAG 540
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      GGTTATTAAAATTATGTGATCTCTTTGCGCAATACATTTTGGATAATCTGATCACATATG 328
                                                                                  

consensus_8362#0      TAATGATTCTTTATCTTGACTTTTTGGATAAGTTTTCATGGGAATATTTGATTTACGCTT 600
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      TACGTAAAAACGATGTATTGTGTCAGTATATCACATAATTCTGATAACCATCTTTTTATC 388
                                                                                  

consensus_8362#0      CGACTGGGATCTTTGTACTCGTGTCACTCCATCTGTTAAACCAGACTGAGACCATATATC 660
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      GCAATATCCAAATTTATCACTGTCTCTCGTTTTTATGGGGGAGTATTATTCAAAAATGAT 448
                                                                                  

consensus_8362#0      TTCCATTTGCATACGTTCCATCACAGTATCTTCGTCTTCATCTTCATCAGAAACAAGCAA 720
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      TAAGAAAAGGAATTAAACTTTAAATTCACTCAATATAATGATTAGTTTATATGCATTGTG 508
                                                                                  

consensus_8362#0      ATAAGGATTATCATTAACTGGACGAAATTCATAACCAACTGAAATAAAGAAAATGAAAGT 780
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      TGTGCTTTATTTAAGGATGACAAGATAGATGTGTTCATTTTCCTTAAAGGTTTGTTCTGA 568
                                                                                  

consensus_8362#0      CACCGTTTCCTTGAATAATTCCACAAGCCATGAATACGAATAGACTACAGTGATTGTCAT 840
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      AATGATAAATGTTATTTATATGAAAGAACAGAAGATAGGGAAGGCCTCGCATATACGAAC 628
                                                                                  

consensus_8362#0      CAGGTAGACAATGACACGTGTAAAATACACGTAACAAATAACCAGAATGTAGAAATGACG 900
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      ATAATCG--TATGAGAAAAATAATAGCCATAAAAGAAGAATCGGTGTGTACAAAGTGTCT 686
                                                                                  

consensus_8362#0      GAATAACCGCAGATTACGCAGATTTATAGCTGCTTTACCATCCGTTTGAGAAGCTGCTTT 960
consensus_8362#2      ------------------------------------------------------------
consensus_8362#1      GTTAGGAAAACAACATGAGTGAATATAAGAAGATCAGAAAATTATCAGAAGTGTTTTTGG 746
                                                                                  

consensus_8362#0      TAAAAGTTTAATAGACCAAACGACAGGGAATAAAATTGCTCCACAACATGCTAAATCGAC 1020
consensus_8362#2      --------------------------------------------------CTAAATCGAC 10
consensus_8362#1      GAGGGAGGGGAAAGAGGGATGAATTACCCATACACGCGCATCTACACCTGGATATTTACT 806
                                                                           * *    

consensus_8362#0      AAAAATGAAAATCTCTTTCNCATGTAG-CATAACGAGCCGCACCGGCTTCAGACTCTTCA 1079
consensus_8362#2      AAAAATGAAAATCTCTTTCC-ATGTAG-CATAACGAGCCGGACCGGCTTCAGACTCTTCA 68
consensus_8362#1      ATATACGTTTATAAAACTGCAAAGCAGGTATAAGGTAACCAAAGGAAATCACAGTTGGTA 866
                      * * * *   **     *   * * **  **** *   *  *  *   *** * *    *

consensus_8362#0      ATAATTATAGTAGCCCTCGTGCCGAATNCTTGGCTCGAG--------------------- 1118
consensus_8362#2      ATAATTATAGTAGCAATATTGGCTAAAACTTGAAGAGGTACTACAATCAGGAACACATTA 128
consensus_8362#1      GCGATAGAAGTAGTAATAATAG-TACTACGCAAACGTGTA-TACACCTCGTGCCGAATTN 924
                         **   *****   *  *    *   *                               

consensus_8362#0      -----------
consensus_8362#2      CGT-------- 131
consensus_8362#1      TTGGCTCGAGG 935