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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1249 fasta sequence
[GCGCGTGTTATCGCTTTGGAGAACGTTCATATTTCTAGTCATGTAAAAGCAGACGTAGCTTGGTTGTGTTCTGGTGTTCGTATACTTTCTGGATTTAAACTTCCTAACCGCTGTTTCATAGGCCCGTCATCAACAGCAGCTGTAACATTGGGCCCAGGATGTGGTAACTTACCAAGTAACAGCGTTTTGGTTGCCCCTCGTACAGGTGATTTAGTTATAGACCCTTCAGTTGGTGGTAAACAAGCCTGGGCTGCCTATTATAAAAAAAGACAACCTTCAGGGACAAGCGATTCTGTGGATAATCTTTCCGAGGAGGATACACAATCCAACCA-AGTGTATTTAAAAGAT-AATGAATTTACAGATTGTCATTTATGGGAAACAGCTTGGGACAGAATTAAATATGCAGCTAAAACACTTCGGCAGAGAATGAATCAAAAGTCTAGTCATAGCCGAACTAGTGATATTCGTTGTAGCAAATCCAGCAAACCTCGCCGTATGGCAAGCGAGATTGATGACAGTGATGGTGATTTGGAACATCAACTAAAAGATACATCAAAAACTGAAAGTGATGGCGATGATGAACAGTCAGAAAGCTTCATAATTACTGAGTTAAAACGAACTTTGCTACGAGGTGAACGACATAAGTATC-CAGCTGAAACACTTATACTTGAAGTTAATTCCTTAAAACATGCTTATAATGTACCTATTGAAGATTTTGGATTCTTACTGACAAAAGCCTTACTGGAGCTAACTCGTGATCATTTATCTTCGAAATCACAAAATGAATGCAGTAAAGCTGATGTAACAGAATTCATCGCCAATCTTCGTAAACTCCTATTAAACTTCAATACTGTTCTGTCATCATGTATGTCAGGATTTCAAAATACTGGTCGAGTTTATCTTCAAGCTGTTGAAGATGCAGCATGCTATGATTCATTAATATTTGCTTCTTCTATGTCTATTATTCACACTATGTATGACAATGATTTAGTTTTAGAAGATGATATATGGTGGTGGAAAGATAATTCTCCACTTTTACTTGATGATGATATTTCCGAGAAAACTCGATCATTAAGAGAAAAAATCAAACCTTTCTTTGATTGGCTTGAACAGGCGGAAGAAGAAGATGACGATGATGAGTGATGACATGTTTATAACTTTGTACAATACTTTATCTTTACTTAATGTGTTATTCGAGGTGTACATATGATAAAAGCAAGTGTTAAAAAATGTAGTTCAATCTGTTGCT]
[+] EMBL CD082970 [GCGCGTGTTATCGCTTTGGAGAACGTTCATATTTCTAGTCATGTAAAAGCAGACGTAGCTTGGTTGTGTTCTGGTGTTCGTATACTTTCTGGATTTAAACTTCCTAACCGCTGTTTCATAGGCCCGTCATCAACAGCAGCTGTAACATTGGGCCCAGGATGTGGTAACTTACCAAGTAACAGCGTTTTGGTTGCCCCTCGTACAGGTGATTTAGTTATAGACCCTTCAGTTGGTGGTAAACAAGCCTGGGCTGCCTATTATAAAAAAAGACAACCTTCAGGGACAAGCGATTCTGTGGATAATCTTTCCGAGGAGGATACACAATCCAACCA AGTGTATTTAAAAGAT AATGAATTTACAGATTGTCATTTATGGGAAACAGCTTGGGACAGAATTAAATATGCAGCTAAAACACTTCGGCAGAGAATGAATCAAAAGTCTAGTCATAGCCGAACTAGTGATATTCGTTGTAGCAAATCCAGCAAACCTCGCCGTATGGCAAGCGAGATTGATGACAGTGATGGTGATTTGGAACATCAACTAANAGATACATCANAAACTGAAAGTGATGGCGATGATGAACAGTCAGAAAGCTTCA ]
[+] EMBL CD180999 [ ATTCTGTGGATAATCTTTCCGAGGAGGATACACAATCCAACCATTGTGTATTTAAAAGATCAATGAATTTACAGATTGTCATTTATGGGAAACAGCTTGGGACATATTTAAATATGCAGCTAAAACACTTCGGCAGAGAATGAATCAAAAGTCTAGTCATAGCCGAACTAGTGATATTCGTTGTAGCAAATCCAGCAAACCTCGCCGTATGGCAAGCGAGATTGATGACAGTGATGGTGATTTGGAACATCAACTAAAAGATACATCAAAAACTGAAAGTGATGGCGATGATGAACAGTCAGAAAGCTTCATAATTACTGAGTTAAAACGAACTTTGCTACGAGGTGAACGACATAAGTATC CAGCTGAAACACTTATACTTGAAGTTAATTCCTTAAAACATGCTTATAATGTACCTATTGAAGATTTTGGATTCTTACTGACAAAAGCCTTACTGGAGCTAACTCGTGATCATTTATCTTCGAAATCACAAAATGAATGCAGNTAAGCTGATGTAACAGAATTCATCGCCAATCTTCGTAAACTCCTATTAAACTTCAATACTGTTCTGTCATCATGTATGTCAGG ]
[+] EMBL CD078054 [ gaggGGCAGAGAATGAATCAAAAGTCTAGTCATAGCCGAACTAGTGATATTCGTTGTAGCAAATCCAGCAAACCTCGCCGTATGGCAAGCGAGATTGATGACAGTGATGGTGATTTGGAACATCAACTAAAAGATACATCAAAAACTGAAAGTGATGGCGATGATGAACAGTCAGAAAGCTTCATAATTACTGAGTTAAAACGAACTTTGGAACGAGGTGAACGACATAAGTATCNCAGCTGAAca ]
[-] EMBL CD076554 [ AATGTACCTATTGAAGATTTTGGATTCTTATTGACAAAAGCCTTACTGGAGCTAACTCGTGATCATTTATCTTCGAAATCACAAAATGAATGCAGTAAAGCTGATGTAACAGAATTCATCGCCAATCTTCGTAAACTCCTATTAAACTTCAATACTGTTCTGTCATCATGTATGTCAGGATTTCAAAATACTGGTCGAGTTTATCTTCAAGCTGTTGAAGATGCAGCATGCTATGATTCATTAATATTTGCTTCTTCTATGTCTATTATTCACACTATGTATGACAATGATTTAGTTTTAGAAGATGATATATGGTGGTGGAAAGATAATTCTCCACTTTTACTTGATGATGATATTTCCGAGAAAACTCGATCATTAAGAGAAAAAATCAAACCTTTCTTTGATTGGCTTGAACAGGCGGAAGAAGAAGATGACGATGATGAGTGATGACATGTTTATAACTTTGTACAATACTTTATCTTTACTTAATGTGTTATTCGAGGTGTACATATGATAAAAGCAAGTGTTAAAAAATGTAGTTCAATCTGTTGCT]
[-] EMBL CD074383 [ ATCATTTAT TTCGAAATCACAAAATGAATGCAGTAAAGCTGATGTAACAGAATTCATCGCCAATCTTCGTAAACTCCTATTAAACTTCAATACTGTTCTGTCATCATGTATGTCAGGATTTCAAAATACTGGTCGAGTTTATCTTCAAGCTGTTGAAGATGCAGCATGCTATGATTCATTAATATTTGCTTCTTCTATGTCTATTATTCACACTATGTATGACAATGATTTAGTTTTAGAAGATGATATATGGTGGTGGAAAGATAATTCTCCACTTTTACTTGATGATGATATTTCCGAGAAAACTCGATCATTAAGAGAAAAAATCAAACCTTTCTTTGATTGGCTTGAACAGGCGGAAGAAGAAGATGACGATGATGAGTGATGACATGTTTATAACTTTGTACAATACTTTATCTTTACTTAATGTGTTATTCGAGGTGTACATATGATAAAAGCAAGTGTTAAAAAATGTAGTTCAATCTGTTGCT]
consensusID : consensus_8370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence
[GTCCTCGAGGCCAANAATTCGGCACGAGGCTAGTCATGTAAAAGCAGACGTAGCTTGGTTGTGTTCTGGTGTTCGTATACTTTCTGGATTTAAACTTCCTAACCGCTGTTTCATAGGCCCGTCATCAACAGCAGCTGTAACATTGGGCCCAGGATGTGGTAACTTACNNAGTAACAGCGT]
[+] EMBL CD080472 [GTCCTCGAGGCCAANAATTCGGCACGAGGCTAGTCATGTAAAAGCAGACGTAGCTTGGTTGTGTTCTGGTGTTCGTATACTTTCTGGATTTAAACTTCCTAACCGCTGTTTCATAGGCCCGTCATCAACAGCAGCTGTAACATTGGGCCCAGGATGTGGTAACTTACNNAGTAACAGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8370#0 GCGCGTGTTATCGCTTTGGAGAACGTT-CATATTTCTAGTCATGTAAAAGCAGACGTAGC 59
consensus_8370#1 ------GTCCTCGAGGCCAANAATTCGGCACGAGGCTAGTCATGTAAAAGCAGACGTAGC 54
** *** * ** ** *************************
consensus_8370#0 TTGGTTGTGTTCTGGTGTTCGTATACTTTCTGGATTTAAACTTCCTAACCGCTGTTTCAT 119
consensus_8370#1 TTGGTTGTGTTCTGGTGTTCGTATACTTTCTGGATTTAAACTTCCTAACCGCTGTTTCAT 114
************************************************************
consensus_8370#0 AGGCCCGTCATCAACAGCAGCTGTAACATTGGGCCCAGGATGTGGTAACTTACCAAGTAA 179
consensus_8370#1 AGGCCCGTCATCAACAGCAGCTGTAACATTGGGCCCAGGATGTGGTAACTTACNNAGTAA 174
***************************************************** *****
consensus_8370#0 CAGCGTTTTGGTTGCCCCTCGTACAGGTGATTTAGTTATAGACCCTTCAGTTGGTGGTAA 239
consensus_8370#1 CAGCGT------------------------------------------------------ 180
******
consensus_8370#0 ACAAGCCTGGGCTGCCTATTATAAAAAAAGACAACCTTCAGGGACAAGCGATTCTGTGGA 299
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 TAATCTTTCCGAGGAGGATACACAATCCAACCAAGTGTATTTAAAAGATAATGAATTTAC 359
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 AGATTGTCATTTATGGGAAACAGCTTGGGACAGAATTAAATATGCAGCTAAAACACTTCG 419
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 GCAGAGAATGAATCAAAAGTCTAGTCATAGCCGAACTAGTGATATTCGTTGTAGCAAATC 479
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 CAGCAAACCTCGCCGTATGGCAAGCGAGATTGATGACAGTGATGGTGATTTGGAACATCA 539
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 ACTAAAAGATACATCAAAAACTGAAAGTGATGGCGATGATGAACAGTCAGAAAGCTTCAT 599
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 AATTACTGAGTTAAAACGAACTTTGCTACGAGGTGAACGACATAAGTATCCAGCTGAAAC 659
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 ACTTATACTTGAAGTTAATTCCTTAAAACATGCTTATAATGTACCTATTGAAGATTTTGG 719
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 ATTCTTACTGACAAAAGCCTTACTGGAGCTAACTCGTGATCATTTATCTTCGAAATCACA 779
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 AAATGAATGCAGTAAAGCTGATGTAACAGAATTCATCGCCAATCTTCGTAAACTCCTATT 839
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 AAACTTCAATACTGTTCTGTCATCATGTATGTCAGGATTTCAAAATACTGGTCGAGTTTA 899
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 TCTTCAAGCTGTTGAAGATGCAGCATGCTATGATTCATTAATATTTGCTTCTTCTATGTC 959
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 TATTATTCACACTATGTATGACAATGATTTAGTTTTAGAAGATGATATATGGTGGTGGAA 1019
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 AGATAATTCTCCACTTTTACTTGATGATGATATTTCCGAGAAAACTCGATCATTAAGAGA 1079
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 AAAAATCAAACCTTTCTTTGATTGGCTTGAACAGGCGGAAGAAGAAGATGACGATGATGA 1139
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 GTGATGACATGTTTATAACTTTGTACAATACTTTATCTTTACTTAATGTGTTATTCGAGG 1199
consensus_8370#1 ------------------------------------------------------------
consensus_8370#0 TGTACATATGATAAAAGCAAGTGTTAAAAAATGTAGTTCAATCTGTTGCT 1249
consensus_8370#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||