|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence
[CCTCGGGCCAANAATTCGGCACGAGGGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACATGATTCACGCTTGCCTTTTGTAAAGACCCAATCATGCTACGTTGACTACAACACCTTTTCTTAAAGGTCTTATCGTGCTTTCTACTATTACAATATATAAGATCCTCGAACGTCACTGTGTTGAACTACTAGGTCCTAAATTAACTACTTTATCGGGAAAGCTTTAACGAAAATGTCTACTTGACATATAAATATATTCAACATCATAGAACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCCAGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTTTACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACTTATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTCGCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTCAACTTCATTTATCTTATGCTTTCACCCTCTGACCTCATTNTTTTTGAGATTCACTCTCGTGAATAAGCTTAACCTCTGATGTAGAGATATTATCTTAAAAGACTTAAGTGACCCTNTNTGATAGCTGCTCATTT-AAAGTATCCTGACTTAACG-AGCATGATNATTCGATT-ACATCCATAGGNTGCTATTCAGATCTGCATATTCAGTATG-AAATATACTANCATCCCT-CCACACATCA-TTCGCTTTTT-ATACTGA-TAANTACTT-TTTTTCANGGGTTGAA]
[+] EMBL CD082457 [CCTCGGGCCAANAATTCGGCACGAGGGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACATGATTCACGCTTGCCTTTTGTAAAGACCCAATCATGCTACGTTGACTACAACACCTTTTCTTAAAGGTCTTATCGTGCTTTCTACTATTACAATATATAAGATCCTCGAACGTCACTGTGTTGAACTACTAGGTCCTAAATTAACTACTTTATCGGGAAAGCTTTAACGAAAATGTCTACTTGACATATAAATATATTCAACATCATAGAACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCCAGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTTTACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACTTATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTCGCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTCAACTTCATTTATCTTATGCTTTCACCCTCTGACCTCATTNTTTTTGAGATTCACTCTCGTGAATAAGCTTAACCTCTGATGTAGAGATATTATCTTAAAAGACTTAAGTGACCCTNTNTGATAGCTGCTCATTT AAAGTATCCTGACTTAACG AGCATGATNATTCGATT ACATCCATAGGNTGCTATTCAGATCTGCATATTCAGTATG AAATATACTANCATCCCT CCACACATCA TTCGCTTTTT ATACTGA TAANTACTT TTTTTCANGGGT ]
[-] EMBL CD076055 [ ACATATAAATATATTCAACATCATAGAACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCCAGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTTTACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACTTATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTCGCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTCAACTTCATTTATCTTATGCTTTCACCCTCTGACCTCATTTTTTTTGAGATTCACTCTCGTGAATAAGCTTAACCTCTGATGTAGAGATATTATCTTAAAAGACTTAAGTGACCCTTTTTGATAGCTGCTCATTTAAAAGTATCCTGACTTAACGAAGCATGATAATTCGATTCACATCCATAGGTTGCTATTCAGATCTGCATATTCAGTATGAAAATATACTACAATCCCTCCCACACATCATTTCGCTTTTTGATACTGATTAATTACTTATTTTTCNAGTGTTGAA]
consensusID : consensus_8373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[AGAGCAATAGGTAGGTCGATGACGTGTTTTTTGAAAAGAACGATGTACTGAAATCAAGGTCAATGTATCCACTATTTCCACAACAATAAATTGTCGTTCAGAAATGGACTATCATGAATAACTATTTCCACATTTAGATGAATAAAATCAGGAAACCTTAGATTTACTCATTGTAAAACGTCTGGGCATAAAACACATTACGAGTAACCACTTTAACATAAGCAGTTGTTGCCAACGTTGTTAGAGCTATTTATTACAAAATAAACTGACAAGTATCAATTAATCACTGAAATTTATTTATTACTGACATTTCAGAAAATGTGTGGATGAATAACAGGATATTCTGGAGAATACTTAACATCCAACTGATAAAATTGGTAGACAGAAAATTTTGTCGTATAACCAGCTGTTGAGGACCTTAGATCCCCAGAACTCATTTGGAAAAGGTCCTAATTTTGTAATTTTATTCTGAAAATTTGAATTTAATGTTCTCGCGTCAAGACCCGCTTAGTTGACCTACAGCTCACATTTCCCACTCGGAATTCCTTGACT]
[+] EMBL CD127869 [AGAGCAATAGGTAGGTCGATGACGTGTTTTTTGAAAAGAACGATGTACTGAAATCAAGGTCAATGTATCCACTATTTCCACAACAATAAATTGTCGTTCAGAAATGGACTATCATGAATAACTATTTCCACATTTAGATGAATAAAATCAGGAAACCTTAGATTTACTCATTGTAAAACGTCTGGGCATAAAACACATTACGAGTAACCACTTTAACATAAGCAGTTGTTGCCAACGTTGTTAGAGCTATTTATTACAAAATAAACTGACAAGTATCAATTAATCACTGAAATTTATTTATTACTGACATTTCAGAAAATGTGTGGATGAATAACAGGATATTCTGGAGAATACTTAACATCCAACTGATAAAATTGGTAGACAGAAAATTTTGTCGTATAACCAGCTGTTGAGGACCTTAGATCCCCAGAACTCATTTGGAAAAGGTCCTAATTTTGTAATTTTATTCTGAAAATTTGAATTTAATGTTCTCGCGTCAAGACCCGCTTAGTTGACCTACAGCTCACATTTCCCACTCGGAATTCCTTGACT]
consensusID : consensus_8373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence
[ATGTATGTGACAATGCATAACATCAACACTGGGATGCAAATACATGCAGTCGAGGAGTCACAAAAAAGACGAAATGAGCTTCATAGATTCCATAACTAGTTTCCAAACAGATTGACTAAATACTGGTTAGATAACTTGATATTGAATCAATTCTTATAGGATGCATTTATAACAACAGAGATTGATCAACTACAGTACTGAATAATAATGGGAAATTTCAAACCTTGTTAGGGACGTTAGATCCCCAGAACTCACTTGGAAAAGGTCCTAATTTTGTAATTTTATTTTGTGTTTTCGCGCCAAGAGACGCTTGATTGACCTACAGCTTATATTTCCCA]
[+] EMBL CD201853 [ATGTATGTGACAATGCATAACATCAACACTGGGATGCAAATACATGCAGTCGAGGAGTCACAAAAAAGACGAAATGAGCTTCATAGATTCCATAACTAGTTTCCAAACAGATTGACTAAATACTGGTTAGATAACTTGATATTGAATCAATTCTTATAGGATGCATTTATAACAACAGAGATTGATCAACTACAGTACTGAATAATAATGGGAAATTTCAAACCTTGTTAGGGACGTTAGATCCCCAGAACTCACTTGGAAAAGGTCCTAATTTTGTAATTTTATTTTGTGTTTTCGCGCCAAGAGACGCTTGATTGACCTACAGCTTATATTTCCCA]
consensusID : consensus_8373#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[GTGGGAAATGTAAGCTGTAGGTCAACTAAGCGTTTCTTGGCGCCCAAACATAGGATTCAAATTTTCAGAATAAAATTACAAAATGAGGATCTTTTCCAAGTGAGTTCTGGGGATCTAAGGTCCCCAATATGAAGTTCAATCTTCCAATTACGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACAT]
[+] EMBL CD145723 [GTGGGAAATGTAAGCTGTAGGTCAACTAAGCGTTTCTTGGCGCCCAAACATAGGATTCAAATTTTCAGAATAAAATTACAAAATGAGGATCTTTTCCAAGTGAGTTCTGGGGATCTAAGGTCCCCAATATGAAGTTCAATCTTCCAATTACGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACAT]
consensusID : consensus_8373#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence
[AGCGTACTAAAAAAAGTTCGTCAACCAATGACAGTCAAGGATTTCTGAGTGGAAGATGTAAGCTGTAGGTCAACTAAGCGTCTCTTGGCGCGAAAACATAAAATTCAAATTTTCAAAATAAAATTACAAAATTAGGACCTTTTCCAAGTGAGTTCTGGGAATCTAAAGTCCTCAAAATCTGTAGAGA]
[+] EMBL CD115098 [AGCGTACTAAAAAAAGTTCGTCAACCAATGACAGTCAAGGATTTCTGAGTGGAAGATGTAAGCTGTAGGTCAACTAAGCGTCTCTTGGCGCGAAAACATAAAATTCAAATTTTCAAAATAAAATTACAAAATTAGGACCTTTTCCAAGTGAGTTCTGGGAATCTAAAGTCCTCAAAATCTGTAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 CCTCGGGCCAANAATTCGGCACGAGGGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTG 60
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 ------------------------------------------------------------
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 TACTTGTGAACGCTAACTGTTCTCTTGACATGATTCACGCTTGCCTTTTGTAAAGACCCA 120
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 ------------------------------------------------------------
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 ATCATGCTACGTTGACTACAACACCTTTTCTTAAAGGTCTTATCGTGCTTTCTACTATTA 180
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 ------------------------------------------------------------
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 CAATATATAAGATCCTCGAACGTCACTGTGTTGAACTACTAGGTCCTAAATTAACTACTT 240
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 ------------------------------------------------------------
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 TATCGGGAAAGCTTTAACGAAAATGTCTACTTGACATATAAATATATTCAACATCATAGA 300
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 ------------------------------------------------------------
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 ACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCC 360
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 ------------------------------------------------------------
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 AGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTT 420
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 -------------------------------------AGAGCAATAGGTAGGTCGATGAC 23
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 TACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACT 480
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 GTGTTTTTTGAAAAGAACGATGTACTGAAATCAAGGTCAATGTATCCACTATTTCCACAA 83
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 TATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTC 540
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 CAATAAATTGTCGTTCAGAAATGGACTATCATGAATAACTATTTCCACATTTAGATGAAT 143
consensus_8373#3 ------------------------------------------------------------
consensus_8373#4 ------------------------------------------------AGCGTAC-TAAA 11
consensus_8373#0 GCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTC-AACT 599
consensus_8373#2 ----------ATGTATGTGACAATGCATAACATCAACACTGGGATGCAAATACAT-GCAG 49
consensus_8373#1 AAAATCAGGAAACCTTAGATTTACTCATTGTAAAACGTCTGGGCATAAAACACATTACGA 203
consensus_8373#3 -------------------------------------GTGGGAAATGTAAGCT----GTA 19
consensus_8373#4 AAAAGTTCGTCAACCAATGACAGTCAAGGATTTCTGAGTGGAAGATGTAAGCT----GTA 67
consensus_8373#0 TCATTTATCTTATGCTTTCACCCTCTGACCTCATTNTTTTTGAGATTCACTCTC---GTG 656
consensus_8373#2 TCGAGGAGTCACAAAAAAGACGAAATGAGCTTCATAGATTCCATAACTAGTTTCCAAACA 109
consensus_8373#1 GTAACCACTTTAACATAAGCAGTTGTTGCCAACGTTGTTAGAGCTATTTATTACAAAATA 263
*
consensus_8373#3 GGTCAACTAAGCGTTTCTT-------GGCGCCCAAACAT-----AGGATTCAAAT----T 63
consensus_8373#4 GGTCAACTAAGCGTCTCTT-------GGCGCGAAAACAT-----AAAATTCAAAT----T 111
consensus_8373#0 AATAAGCTTAACCTCTGAT-------GTAGAGATATTATCTTAAAAGACTTAAGTGACCC 709
consensus_8373#2 GATTGACTAAATACTGGTTA------GATAACTTGATAT-TGAATCAATTCTTATAGGAT 162
consensus_8373#1 AACTGAC-AAGTATCAATTAATCACTGAAATTTATTTATTACTGACATTTCAGAAAATGT 322
* * * * ** *
consensus_8373#3 TT--CAGAATAAAATTACAAAATGAGGAT--CTT---TTCCAAGTGAGTT---------- 106
consensus_8373#4 TT--CAAAATAAAATTACAAAATTAGGAC--CTT---TTCCAAGTGAGTT---------- 154
consensus_8373#0 TN--TNTGATAGCTGCTCATTTAAAGTAT--CCT---GACTTAACGAGCA---------- 752
consensus_8373#2 GC--ATTTATAACAACAGAGATTGATCAA--CTACAGTACTGAATAATAA---------- 208
consensus_8373#1 GTGGATGAATAACAGGATATTCTGGAGAATACTTAACATCCAACTGATAAAATTGGTAGA 382
*** * * * * * *
consensus_8373#3 CTGGGGATCTA-----AGGTCC--CCAATATG-AAGTTCAATCTTCCAATTACGACTGAA 158
consensus_8373#4 CTGGGAATCTA-----AAGTCC--TCAAAATC-TGTAGAGA------------------- 187
consensus_8373#0 TGATNATTCGATT---ACATCC--ATAGGNTGCTATTCAGATCTGCATATTCAGTATGAA 807
consensus_8373#2 TGGGAAATTTC------AAACC--TTGTTAGGGACGTTAGATCCCCAGAACTCACTTGGA 260
consensus_8373#1 CAGAAAATTTTGTCGTATAACCAGCTGTTGAGGACCTTAGATCCCCAGAACTCATTTGGA 442
* ** *
consensus_8373#3 ACGTGCTGTTTTTTGGTCAGTAGTGTGTA---------------CTTGTGAACGCTAACT 203
consensus_8373#4 ------------------------------------------------------------
consensus_8373#0 ATATACTANCATCCCTCCACACATCATTC---------------GCTTTTTATACTGATA 852
consensus_8373#2 AAAGGTCCTAATTTTGTAATTTTATTTTG---------------TGTTTTCGCGCCAAGA 305
consensus_8373#1 AAAGGTCCTAATTTTGTAATTTTATTCTGAAAATTTGAATTTAATGTTCTCGCGTCAAGA 502
consensus_8373#3 GTTCTCT---TGACAT---------------------------------- 216
consensus_8373#4 --------------------------------------------------
consensus_8373#0 ANTACTT---TTTTTCANGGGTTGAA------------------------ 875
consensus_8373#2 GACGCTTGATTGACCTACAGCTTATATTTCCCA----------------- 338
consensus_8373#1 CCCGCTTAGTTGACCTACAGCTCACATTTCCCACTCGGAATTCCTTGACT 552
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||