These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence [CCTCGGGCCAANAATTCGGCACGAGGGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACATGATTCACGCTTGCCTTTTGTAAAGACCCAATCATGCTACGTTGACTACAACACCTTTTCTTAAAGGTCTTATCGTGCTTTCTACTATTACAATATATAAGATCCTCGAACGTCACTGTGTTGAACTACTAGGTCCTAAATTAACTACTTTATCGGGAAAGCTTTAACGAAAATGTCTACTTGACATATAAATATATTCAACATCATAGAACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCCAGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTTTACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACTTATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTCGCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTCAACTTCATTTATCTTATGCTTTCACCCTCTGACCTCATTNTTTTTGAGATTCACTCTCGTGAATAAGCTTAACCTCTGATGTAGAGATATTATCTTAAAAGACTTAAGTGACCCTNTNTGATAGCTGCTCATTT-AAAGTATCCTGACTTAACG-AGCATGATNATTCGATT-ACATCCATAGGNTGCTATTCAGATCTGCATATTCAGTATG-AAATATACTANCATCCCT-CCACACATCA-TTCGCTTTTT-ATACTGA-TAANTACTT-TTTTTCANGGGTTGAA] [+] EMBL CD082457 [CCTCGGGCCAANAATTCGGCACGAGGGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACATGATTCACGCTTGCCTTTTGTAAAGACCCAATCATGCTACGTTGACTACAACACCTTTTCTTAAAGGTCTTATCGTGCTTTCTACTATTACAATATATAAGATCCTCGAACGTCACTGTGTTGAACTACTAGGTCCTAAATTAACTACTTTATCGGGAAAGCTTTAACGAAAATGTCTACTTGACATATAAATATATTCAACATCATAGAACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCCAGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTTTACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACTTATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTCGCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTCAACTTCATTTATCTTATGCTTTCACCCTCTGACCTCATTNTTTTTGAGATTCACTCTCGTGAATAAGCTTAACCTCTGATGTAGAGATATTATCTTAAAAGACTTAAGTGACCCTNTNTGATAGCTGCTCATTT AAAGTATCCTGACTTAACG AGCATGATNATTCGATT ACATCCATAGGNTGCTATTCAGATCTGCATATTCAGTATG AAATATACTANCATCCCT CCACACATCA TTCGCTTTTT ATACTGA TAANTACTT TTTTTCANGGGT ] [-] EMBL CD076055 [ ACATATAAATATATTCAACATCATAGAACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCCAGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTTTACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACTTATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTCGCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTCAACTTCATTTATCTTATGCTTTCACCCTCTGACCTCATTTTTTTTGAGATTCACTCTCGTGAATAAGCTTAACCTCTGATGTAGAGATATTATCTTAAAAGACTTAAGTGACCCTTTTTGATAGCTGCTCATTTAAAAGTATCCTGACTTAACGAAGCATGATAATTCGATTCACATCCATAGGTTGCTATTCAGATCTGCATATTCAGTATGAAAATATACTACAATCCCTCCCACACATCATTTCGCTTTTTGATACTGATTAATTACTTATTTTTCNAGTGTTGAA] consensusID : consensus_8373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [AGAGCAATAGGTAGGTCGATGACGTGTTTTTTGAAAAGAACGATGTACTGAAATCAAGGTCAATGTATCCACTATTTCCACAACAATAAATTGTCGTTCAGAAATGGACTATCATGAATAACTATTTCCACATTTAGATGAATAAAATCAGGAAACCTTAGATTTACTCATTGTAAAACGTCTGGGCATAAAACACATTACGAGTAACCACTTTAACATAAGCAGTTGTTGCCAACGTTGTTAGAGCTATTTATTACAAAATAAACTGACAAGTATCAATTAATCACTGAAATTTATTTATTACTGACATTTCAGAAAATGTGTGGATGAATAACAGGATATTCTGGAGAATACTTAACATCCAACTGATAAAATTGGTAGACAGAAAATTTTGTCGTATAACCAGCTGTTGAGGACCTTAGATCCCCAGAACTCATTTGGAAAAGGTCCTAATTTTGTAATTTTATTCTGAAAATTTGAATTTAATGTTCTCGCGTCAAGACCCGCTTAGTTGACCTACAGCTCACATTTCCCACTCGGAATTCCTTGACT] [+] EMBL CD127869 [AGAGCAATAGGTAGGTCGATGACGTGTTTTTTGAAAAGAACGATGTACTGAAATCAAGGTCAATGTATCCACTATTTCCACAACAATAAATTGTCGTTCAGAAATGGACTATCATGAATAACTATTTCCACATTTAGATGAATAAAATCAGGAAACCTTAGATTTACTCATTGTAAAACGTCTGGGCATAAAACACATTACGAGTAACCACTTTAACATAAGCAGTTGTTGCCAACGTTGTTAGAGCTATTTATTACAAAATAAACTGACAAGTATCAATTAATCACTGAAATTTATTTATTACTGACATTTCAGAAAATGTGTGGATGAATAACAGGATATTCTGGAGAATACTTAACATCCAACTGATAAAATTGGTAGACAGAAAATTTTGTCGTATAACCAGCTGTTGAGGACCTTAGATCCCCAGAACTCATTTGGAAAAGGTCCTAATTTTGTAATTTTATTCTGAAAATTTGAATTTAATGTTCTCGCGTCAAGACCCGCTTAGTTGACCTACAGCTCACATTTCCCACTCGGAATTCCTTGACT] consensusID : consensus_8373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [ATGTATGTGACAATGCATAACATCAACACTGGGATGCAAATACATGCAGTCGAGGAGTCACAAAAAAGACGAAATGAGCTTCATAGATTCCATAACTAGTTTCCAAACAGATTGACTAAATACTGGTTAGATAACTTGATATTGAATCAATTCTTATAGGATGCATTTATAACAACAGAGATTGATCAACTACAGTACTGAATAATAATGGGAAATTTCAAACCTTGTTAGGGACGTTAGATCCCCAGAACTCACTTGGAAAAGGTCCTAATTTTGTAATTTTATTTTGTGTTTTCGCGCCAAGAGACGCTTGATTGACCTACAGCTTATATTTCCCA] [+] EMBL CD201853 [ATGTATGTGACAATGCATAACATCAACACTGGGATGCAAATACATGCAGTCGAGGAGTCACAAAAAAGACGAAATGAGCTTCATAGATTCCATAACTAGTTTCCAAACAGATTGACTAAATACTGGTTAGATAACTTGATATTGAATCAATTCTTATAGGATGCATTTATAACAACAGAGATTGATCAACTACAGTACTGAATAATAATGGGAAATTTCAAACCTTGTTAGGGACGTTAGATCCCCAGAACTCACTTGGAAAAGGTCCTAATTTTGTAATTTTATTTTGTGTTTTCGCGCCAAGAGACGCTTGATTGACCTACAGCTTATATTTCCCA] consensusID : consensus_8373#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [GTGGGAAATGTAAGCTGTAGGTCAACTAAGCGTTTCTTGGCGCCCAAACATAGGATTCAAATTTTCAGAATAAAATTACAAAATGAGGATCTTTTCCAAGTGAGTTCTGGGGATCTAAGGTCCCCAATATGAAGTTCAATCTTCCAATTACGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACAT] [+] EMBL CD145723 [GTGGGAAATGTAAGCTGTAGGTCAACTAAGCGTTTCTTGGCGCCCAAACATAGGATTCAAATTTTCAGAATAAAATTACAAAATGAGGATCTTTTCCAAGTGAGTTCTGGGGATCTAAGGTCCCCAATATGAAGTTCAATCTTCCAATTACGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTGTACTTGTGAACGCTAACTGTTCTCTTGACAT] consensusID : consensus_8373#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [AGCGTACTAAAAAAAGTTCGTCAACCAATGACAGTCAAGGATTTCTGAGTGGAAGATGTAAGCTGTAGGTCAACTAAGCGTCTCTTGGCGCGAAAACATAAAATTCAAATTTTCAAAATAAAATTACAAAATTAGGACCTTTTCCAAGTGAGTTCTGGGAATCTAAAGTCCTCAAAATCTGTAGAGA] [+] EMBL CD115098 [AGCGTACTAAAAAAAGTTCGTCAACCAATGACAGTCAAGGATTTCTGAGTGGAAGATGTAAGCTGTAGGTCAACTAAGCGTCTCTTGGCGCGAAAACATAAAATTCAAATTTTCAAAATAAAATTACAAAATTAGGACCTTTTCCAAGTGAGTTCTGGGAATCTAAAGTCCTCAAAATCTGTAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 CCTCGGGCCAANAATTCGGCACGAGGGACTGAAACGTGCTGTTTTTTGGTCAGTAGTGTG 60 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 ------------------------------------------------------------ consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 TACTTGTGAACGCTAACTGTTCTCTTGACATGATTCACGCTTGCCTTTTGTAAAGACCCA 120 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 ------------------------------------------------------------ consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 ATCATGCTACGTTGACTACAACACCTTTTCTTAAAGGTCTTATCGTGCTTTCTACTATTA 180 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 ------------------------------------------------------------ consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 CAATATATAAGATCCTCGAACGTCACTGTGTTGAACTACTAGGTCCTAAATTAACTACTT 240 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 ------------------------------------------------------------ consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 TATCGGGAAAGCTTTAACGAAAATGTCTACTTGACATATAAATATATTCAACATCATAGA 300 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 ------------------------------------------------------------ consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 ACCAAGAATCTTTTAAAGATTTTTCACCTAGTTTTCCTTATATTACAGAGCTTCTCTTCC 360 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 ------------------------------------------------------------ consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 AGTTCACTTAGCAGATTCCAGAATCAATATTTTCCTTTGTACAAAATGAGTTGTTTACTT 420 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 -------------------------------------AGAGCAATAGGTAGGTCGATGAC 23 consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 TACTTTTTAATTAATTTCTCAGTTATCGTATAATTCACCTTACCCAAATCATAAATCACT 480 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 GTGTTTTTTGAAAAGAACGATGTACTGAAATCAAGGTCAATGTATCCACTATTTCCACAA 83 consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 TATTTACTGGTAATTAAGATTTTTAATCACAATAACTTTTAATCCTCTTTTTTGAATTTC 540 consensus_8373#2 ------------------------------------------------------------ consensus_8373#1 CAATAAATTGTCGTTCAGAAATGGACTATCATGAATAACTATTTCCACATTTAGATGAAT 143 consensus_8373#3 ------------------------------------------------------------ consensus_8373#4 ------------------------------------------------AGCGTAC-TAAA 11 consensus_8373#0 GCCTAACTAATTTAGTATATTGCAAAACAATTCACAAATCGAGTTATTGATTTTC-AACT 599 consensus_8373#2 ----------ATGTATGTGACAATGCATAACATCAACACTGGGATGCAAATACAT-GCAG 49 consensus_8373#1 AAAATCAGGAAACCTTAGATTTACTCATTGTAAAACGTCTGGGCATAAAACACATTACGA 203 consensus_8373#3 -------------------------------------GTGGGAAATGTAAGCT----GTA 19 consensus_8373#4 AAAAGTTCGTCAACCAATGACAGTCAAGGATTTCTGAGTGGAAGATGTAAGCT----GTA 67 consensus_8373#0 TCATTTATCTTATGCTTTCACCCTCTGACCTCATTNTTTTTGAGATTCACTCTC---GTG 656 consensus_8373#2 TCGAGGAGTCACAAAAAAGACGAAATGAGCTTCATAGATTCCATAACTAGTTTCCAAACA 109 consensus_8373#1 GTAACCACTTTAACATAAGCAGTTGTTGCCAACGTTGTTAGAGCTATTTATTACAAAATA 263 * consensus_8373#3 GGTCAACTAAGCGTTTCTT-------GGCGCCCAAACAT-----AGGATTCAAAT----T 63 consensus_8373#4 GGTCAACTAAGCGTCTCTT-------GGCGCGAAAACAT-----AAAATTCAAAT----T 111 consensus_8373#0 AATAAGCTTAACCTCTGAT-------GTAGAGATATTATCTTAAAAGACTTAAGTGACCC 709 consensus_8373#2 GATTGACTAAATACTGGTTA------GATAACTTGATAT-TGAATCAATTCTTATAGGAT 162 consensus_8373#1 AACTGAC-AAGTATCAATTAATCACTGAAATTTATTTATTACTGACATTTCAGAAAATGT 322 * * * * ** * consensus_8373#3 TT--CAGAATAAAATTACAAAATGAGGAT--CTT---TTCCAAGTGAGTT---------- 106 consensus_8373#4 TT--CAAAATAAAATTACAAAATTAGGAC--CTT---TTCCAAGTGAGTT---------- 154 consensus_8373#0 TN--TNTGATAGCTGCTCATTTAAAGTAT--CCT---GACTTAACGAGCA---------- 752 consensus_8373#2 GC--ATTTATAACAACAGAGATTGATCAA--CTACAGTACTGAATAATAA---------- 208 consensus_8373#1 GTGGATGAATAACAGGATATTCTGGAGAATACTTAACATCCAACTGATAAAATTGGTAGA 382 *** * * * * * * consensus_8373#3 CTGGGGATCTA-----AGGTCC--CCAATATG-AAGTTCAATCTTCCAATTACGACTGAA 158 consensus_8373#4 CTGGGAATCTA-----AAGTCC--TCAAAATC-TGTAGAGA------------------- 187 consensus_8373#0 TGATNATTCGATT---ACATCC--ATAGGNTGCTATTCAGATCTGCATATTCAGTATGAA 807 consensus_8373#2 TGGGAAATTTC------AAACC--TTGTTAGGGACGTTAGATCCCCAGAACTCACTTGGA 260 consensus_8373#1 CAGAAAATTTTGTCGTATAACCAGCTGTTGAGGACCTTAGATCCCCAGAACTCATTTGGA 442 * ** * consensus_8373#3 ACGTGCTGTTTTTTGGTCAGTAGTGTGTA---------------CTTGTGAACGCTAACT 203 consensus_8373#4 ------------------------------------------------------------ consensus_8373#0 ATATACTANCATCCCTCCACACATCATTC---------------GCTTTTTATACTGATA 852 consensus_8373#2 AAAGGTCCTAATTTTGTAATTTTATTTTG---------------TGTTTTCGCGCCAAGA 305 consensus_8373#1 AAAGGTCCTAATTTTGTAATTTTATTCTGAAAATTTGAATTTAATGTTCTCGCGTCAAGA 502 consensus_8373#3 GTTCTCT---TGACAT---------------------------------- 216 consensus_8373#4 -------------------------------------------------- consensus_8373#0 ANTACTT---TTTTTCANGGGTTGAA------------------------ 875 consensus_8373#2 GACGCTTGATTGACCTACAGCTTATATTTCCCA----------------- 338 consensus_8373#1 CCCGCTTAGTTGACCTACAGCTCACATTTCCCACTCGGAATTCCTTGACT 552 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||