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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1121 fasta sequence
[TCCGAGCCAAAAATTCGGCACGAGAGTTTATATTAGGAAGTACATAAATAAAAAATGAATTATTAACTGGACCTTCAGCAGGAATTCGGTTATCGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGTTCAAATGAGAATATTCACAGACAGTCAGATGATGCATTTCGTGCAGCCAGAATGCCTGGAGAGTACCCTATGCCAATGTTTGACTTCATCCCACCATCTGCACTACCTAAATTACCAAACTACGAAGAATGCGTAAATACTGGTCCACCAGCAAATGACGAAGCTCCACCTCCACCAACTCCACTTTCTTTTTATTCAGCTAATTCAAATGGTCAACCAGCCTTACATTTTACTATCCACAGTCAACCCGACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGCTAGTCCTTTATCCACACCTCCACCAACTTATTCATCAACTTGTTTGCACAGGCCATCAACGACGAGTCGAACAGTTGAAGGTACATCTCGAACAGTTGAAAACTCATCTCATACAACATCAAGGCAATTATCGGTGGACCGTTAATTAATTGTTATCTTAATATTTTTTTCCTAATTACTGTTTCCTACTCTCGAAGTGGTGGATTACCTGTTTCTCCCTGTTGTATCTTATGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTTAATTACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA]
[+] EMBL CD082672 [TCCGAGCCAAAAATTCGGCACGAGAGTTTATATTAGGAAGTACATAAATAAAAAATGAATTATTAACTGGACCTTCAGCAGGAATTCGGTTATCGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGTTCAAATGAGAATATTCACAGACAGTCAGATGATGCATTTCGTGCAGCCAGAATGCCTGGAGAGTACCCTATGCCAATGTTTGACTTCATCCCACCATCTGCACTACCTAAATTACCAAACTACGAAGAATGCGTAAATACTGGTCCACCAGCAAATGACGAAGCTCCACCTCCACCAACTCCACTTTCTTTTTATTCAGCTAATTCAAATGGTCAACCAGCCTTACATTTTACTATCCACAGTCAACCCGACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGCTAGTCCTTTATCCACACCTCCACCAACTTATTCATCAACTTGTTTGCACAGGCCATCAACGACGAGTCGAACAGTTGAAGGTACAT ]
[-] EMBL CD076267 [ CAACCCGACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGCTAGTCCTTTATCCACACCTCCACCAACTTATTCATCAACTTGTTTGCACAGGCCATCAACGACGAGTCGAACAGTTGAAGGTACATCTCGAACAGTTGAAAACTCATCTCATACAACATCAAGGCAATTATCGGTGGACCGTTAATTAATTGTTATCTTAATATTTTTTTCCTAATTACTGTTTCCTACTCTCGAAGTGGTGGATTACCTGTTTCTCCCTGTTGTATCTTATGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTTAATTACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA]
[-] EMBL CD076870 [ GTTGTATCTTATGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTCTTTTCTTGTTTTAATGACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA]
consensusID : consensus_8376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCCCCGCCCAAATTTTTTTTTTTCTCCCAGTAATATTCAGTGTTTAACCAGCCCTTTATTTTTTTAAACCCAAGATAACCGGGGTTTGTGGGTGAAATAAACACGTTTTAAAAGCATGGAATACCTTTTTACCCACTCCTCCCCCAATTTTTTTTTTAATGTTGTTCCCACAGCCAATCAGCGAGTAGTGGAACATTTAAGGGTACATCTCAAACAGTTGAAATCTCATTCTCATACAACATCAAGCAAATTATCGGTGGACCGTAAATAAATTGTTATCTAAATATTTTTTTCAAAATTACTGTTTCCTACTCTAAAAGTGGTGGATCACTTGTTTCTCCCTGTTGTATCTTAAGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTCAATCACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA]
[-] EMBL CD076886 [CCCCCGCCCAAATTTTTTTTTTTCTCCCAGTAATATTCAGTGTTTAACCAGCCCTTTATTTTTTTAAACCCAAGATAACCGGGGTTTGTGGGTGAAATAAACACGTTTTAAAAGCATGGAATACCTTTTTACCCACTCCTCCCCCAATTTTTTTTTTAATGTTGTTCCCACAGCCAATCAGCGAGTAGTGGAACATTTAAGGGTACATCTCAAACAGTTGAAATCTCATTCTCATACAACATCAAGCAAATTATCGGTGGACCGTAAATAAATTGTTATCTAAATATTTTTTTCAAAATTACTGTTTCCTACTCTAAAAGTGGTGGATCACTTGTTTCTCCCTGTTGTATCTTAAGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTCAATCACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA]
consensusID : consensus_8376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[TAAGTTAATCATTACAAATCTTCAACCAAATTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAATGAAACATAACCAGTCGATGATTTTTTAAAGATCATTTTAAAAAGATCCTGATATTCATGCTACTTATTTAATGAATTTTAAGTAATGATTTTAATTTTTTTAAAATATTCAAAAACTAATCATTCTCTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTAAACTATAAATTCCATCATTTTTTTGTTTCTCTGGATAGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTCAGGTGTGTTGGCTATATTACTTGTTNTATTCCTATTACTTTTGTGTCTTCCATGGAATAAGTGTGATCGATACTGGTCTTGCTGTCGTTGTTGGCTTTTTTAGTCAATGAGAATA]
[+] EMBL CD164079 [TAAGTTAATCATTACAAATCTTCAACCAAATTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAATGAAACATAACCAGTCGATGATTTTTTAAAGATCATTTTAAAAAGATCCTGATATTCATGCTACTTATTTAATGAATTTTAAGTAATGATTTTAATTTTTTTAAAATATTCAAAAACTAATCATTCTCTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTAAACTATAAATTCCATCATTTTTTTGTTTCTCTGGATAGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTCAGGTGTGTTGGCTATATTACTTGTTNTATTCCTATTACTTTTGTGTCTTCCATGGAATAAGTGTGATCGATACTGGTCTTGCTGTCGTTGTTGGCTTTTTTAGTCAATGAGAATA]
[+] EMBL CD163913 [TAAGTTAATCATTACAAATCTTCAACCAAATTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAATGAAACATAACCAGTCGATGATTTTTTAAAGATCATTTTAAAAAGATCCTGATATTCACGCTACTTATTCAATGAATTTTAAGTAATGATTTCAATTTTTTTAAAATATTCAAAAACTAATCATTCTTTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTAAACTATAAATTCCATCATTTTTTTGTTTCTCTGAATAGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGGTGTGTTGGCTATATTACTTGTTTTATTCCTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8376#0 TCCGAGCCAAAAATTCGGCACGAGAGTTTATATTAGGAAGTACATAAATAAAAAATGAAT 60
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 TATTAACTGGACCTTCAGCAGGAATTCGGTTATCGAAGTTTTAACGAAAACAATTTACAT 120
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 AACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAA 180
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 ATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCT 240
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 TGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGTTCA 300
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 AATGAGAATATTCACAGACAGTCAGATGATGCATTTCGTGCAGCCAGAATGCCTGGAGAG 360
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 TACCCTATGCCAATGTTTGACTTCATCCCACCATCTGCACTACCTAAATTACCAAACTAC 420
consensus_8376#1 ------------------------------------------------------------
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 GAAGAATGCGTAAATACTGGTCCACCAGCAAATGACGAAGCTCCACCTCCACCAACTCCA 480
consensus_8376#1 ---------------------------------------------CCCCCGCCCAAATTT 15
consensus_8376#2 ------------------------------------------------------------
consensus_8376#0 CTTTCTTTTTATTCAGCTAATTCAAATGGTCAACCAGCCTTACATTTTACTATCCACA-G 539
consensus_8376#1 TTTTTTTTCT-CCCAGTAATATTCAGTGTTTAACCAGCCCTTTATTTTTTTAAACCCAAG 74
consensus_8376#2 ------------------------------TAAGTTAATCATTACAAATCTTCAACCAAA 30
** * * **
consensus_8376#0 TCAACCCG--ACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGC--TAGTCCTTTAT 595
consensus_8376#1 ATAACCGG--GGTTTGTGGGTGAAATAAACACGTTTTAAAAGCATGGAATACCTTTTTAC 132
consensus_8376#2 TTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAA-----TGAA 85
*** ** ** * * * * * * * * *
consensus_8376#0 CCACACCTCCACCAACTTATTCATCAAC-TTGTTTGCACAGGCCATCAACGACGAGTCGA 654
consensus_8376#1 CCACTCCTCCCCCAATTTTTTTTTTAATGTTGTTCCCACAGCCAATCAGCGAGTAGTGGA 192
consensus_8376#2 ACATAAC-CAGTCGATGATTTTTTAAAGATCATTT-TAAAAAGATCCTGATATTCATGCT 143
** * * * * ** * ** * ** * * * * *
consensus_8376#0 ACAGTTGAAGGTACATCTCGAACAGTTGAAAACTCAT-CTCATACAACATCAAGGCAATT 713
consensus_8376#1 ACATTTAAGGGTACATCTCAAACAGTTGAAATCTCATTCTCATACAACATCAAGCAAATT 252
consensus_8376#2 ACTTATTTAA-TGAATTTTAAGTAAT--GATTTTAATTTTTTTAAAATATTCAAAAACTA 200
** * * ** * * * * * * ** * ** ** ** * * *
consensus_8376#0 ATCGGTGGACCGTTAATTAATTGTTATCTTAATATTTTTTTCCTAATTACTGTTTCCTAC 773
consensus_8376#1 ATCGGTGGACCGTAAATAAATTGTTATCTAAATATTTTTTTCAAAATTACTGTTTCCTAC 312
consensus_8376#2 ATCATTCTCTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTA--AAC 258
*** * ** *** **** * *** ** ****** ** **
consensus_8376#0 TCTCGAAGTGGTGGATTACCTGTTTCTCCCTGTTGTATCTT------ATGCCATTCTTTC 827
consensus_8376#1 TCTAAAAGTGGTGGATCACTTGTTTCTCCCTGTTGTATCTT------AAGCCATTCTTTC 366
consensus_8376#2 TATAAATTCCATCATTTTTTTGTTTCTCTGGATAGAAGTTTTAACGAAAACAATTTACAT 318
* * * * * ******** * * * ** * * ***
consensus_8376#0 AG--TTGTGGGTGTTTTGGTCTTTTTT---CTTGTTTTAATTACAAATATGGAGATGAAA 882
consensus_8376#1 AG--TTGTGGGTGTTTTGGTCTTTTTT---CTTGTTTCAATCACAAATATGGAGATGAAA 421
consensus_8376#2 AACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAA 378
* * * * * * ** * ** * *** * * ** * ****
consensus_8376#0 ATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAG 942
consensus_8376#1 ATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAG 481
consensus_8376#2 ATACAACAATA-AATCAACAAAAAA--AAAGAAAAAAAACAGATTAACGATGGAAAAAAC 435
*** * **** ** * ** ** * * * * ** * *
consensus_8376#0 TTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAA 1002
consensus_8376#1 TTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAA 541
consensus_8376#2 CCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGC-AACTGGAGCTACCTCAG 494
* * * * * * ** ** **** * * * * * ***
consensus_8376#0 CCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAAT 1062
consensus_8376#1 CCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAAT 601
consensus_8376#2 GTGTGTTGGCTATATTACTTGTTNTATTCCTATTACTTTTGTGTCTTCCATGGAATAAGT 554
* * * * *** * ** * * * * * ** * ** ** *
consensus_8376#0 AACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA 1121
consensus_8376#1 AACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA 660
consensus_8376#2 GTGATCGATAC-TGGTCTTGCTGTCGTTGTTGGCTTTTTTAGTCAATGAGA-ATA---- 607
* * * * * ** ** * * * * ** *** * * ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||