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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence
[TTTTTTTTTTTTTTTTTAGAACTCCGTAAATTGTATTTTTTCAATAAAAAGTAACAAAATGCAATCTTTGAATTTAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTATTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACATCTTGAGGCAGTGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGGAACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTAACTCTCCACTGGA-TTTTCTTCATAG-ACTCCCTTATATCAA-AAACG-TTTTCCTCTGAA-TCTCTTACACACGCG-ACTTTTTTCCACTTAAGTCTATTAGC-GGTCTCCGCCTGATGTAATCCTGCGTGATGACTCCGT-GAGCCACTTGACTTGTTAGGTTTTTTGGTTACAACAGGCTAAAAGTACCATAAATAATATATGAAAATACCTCCTCGAGATCTGAAAGGGAAGAATCAGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAAGGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGT-CCAGTGATTAAAA-CACTGAGTTGGAGAAC-CTCCAGAGTTAAGCACCACGGGACGGCAAAAAGC]
[+] EMBL AI395031 [TTTTTTTTTTTTTTTTTAGAACTCCGTAAATTGTATTTTTTCAATAAAAAGTAACAAAATGCAATCTTTGAATTTAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTATTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACATCTTGAGGCAGTGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGGAACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTAACTCTCCACTGGA TTTTCTTCATAG ACTCCCTTATATCAA AAACG TTTTCCTCTGAA TCTCTTACACACGCG ACTTTTTTCCACTTAAGTCTATTAGC GGTCTCCGCCTGATGTAATCCTGCGTGATGACTCCGT GAGCCACTTG ]
[+] EMBL CD075001 [ taaccTTGTATTTTTGGAAAAAAAAGTAACAAAATGCAATCTTTGAATTCAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTATTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACATCTTGAGGCAGTGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGGAACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTAACTCTCCACTGGATTTTTCTTCATAGTACTCCCTTATATCAACAAACGCTTTTCCTCTGAACTCTCTTACACACGCGAACTTTTTTCCAGTTAAGTCTATTAGCTGGTCTCCGCCTGATGTAGTCGTGCGTGATGACTTCGTGGAGCCACTTGACTTGTTAGGTTTTTTGGTTACAACAGGCTAAAAGTACCATAAATAATATATGAAAATACCTCCTCGAGATCTGAAAGGGAAGAATCAGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAAGGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGT CCAGTGATTAAAA CACTGAGTTGGAGAAC CTCCAGAGTTAAGCACCACGGGACGGCAA ]
[-] EMBL CD081179 [ AGGTTTTTTGGTTACAACAGGCTAAAAGTACCATAAATAATATATGAAAATACCTCCTCGAGATCTGAAAGGGAAGAATCAGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAAGGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGTCCCAGTGATTAAAACCACTGAGTTGGAGAACGCTCCAGAGTTAAGCAACACGGGACGGCAAAAAGC]
consensusID : consensus_8378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[GAATAAGCTCACGAAAGCAATCAAGTTGAAAAAATAGAACTCCGTAAATTGTATTTTTCAATANAAAGTAACAAAATGCAATCTTTGAATTTAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTATTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACA-TCTTGAGGCAGTGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGGAACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTAACTCTCCACTGGATTTTTCTTCATAGTACTCCCTTATATCAACAAACGCTTTTCCTCTGAACTCTCTTACACACGCGAACTTTTTTCCAGTTAAGTCTATTAGCTGGTGTCCGCCTGATGTAGTCGTGCGTGATGACTTCGTGGAGCCACTTGACTTGTTAGGTTTTTTGGTTACAACAGGCTCCTCGAGATCTGAAAGGGAAGAATCAGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAAGGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGTCCAGTGATGTATACACT-AG-TGGAGAGCCTCCAGAGTTAAGCACCACGGGACGGCAAAAAG]
[-] EMBL CD082402 [GAATAAGCTCACGAAAGCAATCAAGTTGAAAAAATAGAACTCCGTAAATTGTATTTTTCAATANAAAGTAACAAAATGCAATCTTTGAATTTAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTATTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACA TCTTGAGGCAGTGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGGAACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTAACTCTCCACTGGATTTTTCTTCATAGTACTCCCTTATATCAACAAACGCTTTTCCTCTGAACTCTCTTACACACGCGAACTTTTTTCCAGTTAAGTCTATTAGCTGGTGTCCGCCTGATGTAGTCGTGCGTGATGACTTCGTGGAGCCACTTGACTTGTTAGGTTTTTTGGTTACAACAGGCTCCTCGAGATCTGAAAGGGAAGAATCAGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAAGGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGTCCAGTGATGTATACACT AG TGGAGAGCCTCCAGAGTTAAGCACCACGGG ]
[-] EMBL CD183339 [ AAAATATGGCTAGAT AACATTCTTGAGGCAGTGG TCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGGAACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTAACTCTCCACTGGATTTTTCTTCATAGTACTCCCTTATATCAACAAACGCTTTTCCTCTGAACTCTCTTACACACGCGAACTTTTTTCCAGTTAAGTCTATTAGCTGGTCTCCGCCTGATGTAGTCGTGCGTGATGACTTCGTGGAGCCACTTGACTTGTTAGGTTTTTTGGTTACAA CTCCTCGAGATCTGAAAGGGAAGAATCAGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAAGGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGTCCAGTGATTAAAACACTGAGTTGGAGAACCTCCAGAGTTAAGCACCACGGGACGGCAAAAAG]
consensusID : consensus_8378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GTTTGTTTCCTTTTTTTTTTTTTCAAAATTCTGAAGTCTGTATTGAATAAGCTCAGGAAGGCAATCAGTTTGGAAAATTAGAACTCGGTAAATTGTATTTTTGCAATAAAAGGTAACAAAGTGCAATCTTGGATTTTAAAAACAGAAGTTTTGGGGCAATTTTAGCAAAGCATTAGTTATTACGATTAAGCTGACGGGGAAACTATCAAAAATGGGGCTAGATAAACATCTGAGGCAGTGGTTCTTTGAAGAGTTATCGTCGCAGATTTTAATATCATCVTCTATTCACGATGGACTTACAACACCCCATGGTCCAAAGTTAGGGAATCCTTCTTCCAGGTTAACCCCAGGGA]
[+] EMBL AI444548 [GTTTGTTTCCTTTTTTTTTTTTTCAAAATTCTGAAGTCTGTATTGAATAAGCTCAGGAAGGCAATCAGTTTGGAAAATTAGAACTCGGTAAATTGTATTTTTGCAATAAAAGGTAACAAAGTGCAATCTTGGATTTTAAAAACAGAAGTTTTGGGGCAATTTTAGCAAAGCATTAGTTATTACGATTAAGCTGACGGGGAAACTATCAAAAATGGGGCTAGATAAACATCTGAGGCAGTGGTTCTTTGAAGAGTTATCGTCGCAGATTTTAATATCATCVTCTATTCACGATGGACTTACAACACCCCATGGTCCAAAGTTAGGGAATCCTTCTTCCAGGTTAACCCCAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8378#0 ------------------------------------------------------------
consensus_8378#1 --------------------------------------------GAATAAGCTCACGAAA 16
consensus_8378#2 GTTTGTTTCCTTTTTTTTTTTTTCAAAATTCTGAAGTCTGTATTGAATAAGCTCAGGAAG 60
consensus_8378#0 --TTTTTTTTTTTTTTTTTAGAACTCCGTAAATTGTATTTTTTCAATAAAAAGTAACAAA 58
consensus_8378#1 GCAATCAAGTTGAAAAAATAGAACTCCGTAAATTGTATTTTT-CAATANAAAGTAACAAA 75
consensus_8378#2 GCAATCAGTTTGGAAAATTAGAACTCGGTAAATTGTATTTTTGCAATAAAAGGTAACAAA 120
* ** ******** *************** ***** ** ********
consensus_8378#0 ATGCAATCTTTGAATTTAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTA 118
consensus_8378#1 ATGCAATCTTTGAATTTAATAACAGAAGTTTTTGGGCAAATTTTAACAAAGCAATAGTTA 135
consensus_8378#2 GTGCAATCTTGGATTTTAAAAACAGAAGTTTTGGGGCAA-TTTTAGCAAAGCATTAGTTA 179
********* ** ***** ************ ****** ***** ******* ******
consensus_8378#0 TTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACATCTTGAGGCAG 178
consensus_8378#1 TTACTATTAAGCTGACCGGGAAAGTATCAAAAATATGGCTAGATAAACATCTTGAGGCAG 195
consensus_8378#2 TTACGATTAAGCTGACGGGGAAACTATCAAAAATGGGGCTAGATAAACATCT-GAGGCAG 238
**** *********** ****** ********** **************** *******
consensus_8378#0 TGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGG 238
consensus_8378#1 TGGTTCTTTTGAAGAGTTATCGTCGCAGATTTTTTATATCATCATCTAATTCACCGATGG 255
consensus_8378#2 TGGTTCTTT-GAAGAGTTATCGTCGCAGATTTTA-ATATCATCVTCTA-TTCAC-GATGG 294
********* *********************** ******** **** ***** *****
consensus_8378#0 AACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTA 298
consensus_8378#1 AACTTTTCAAATACTCCCATTGTTCCAAGTTAAGGGAAATTCCTTTCTTTCCAGGTTTTA 315
consensus_8378#2 A---CTTACAACAC-CCCATGGTCCAAAGTTAGGGAA---TCCTTC--TTCCAGGT--TA 343
* ** ** ** ***** ** * ****** ** * ***** ******** **
consensus_8378#0 ACTCTCCACTGGATTTT-CTTCATAG-ACTCCCTTATATCAA-AAACG-TTTTCCTCTGA 354
consensus_8378#1 ACTCTCCACTGGATTTTTCTTCATAGTACTCCCTTATATCAACAAACGCTTTTCCTCTGA 375
consensus_8378#2 ACCC--CAGGGA------------------------------------------------ 353
** * ** *
consensus_8378#0 A-TCTCTTACACACGCGA-CTTTTTTCCACTTAAGTCTATTAGC-GGTCTCCGCCTGATG 411
consensus_8378#1 ACTCTCTTACACACGCGAACTTTTTTCCAGTTAAGTCTATTAGCTGGTGTCCGCCTGATG 435
consensus_8378#2 ------------------------------------------------------------
consensus_8378#0 TAATCCTGCGTGATGACTCCGTG-AGCCACTTGACTTGTTAGGTTTTTTGGTTACAACAG 470
consensus_8378#1 TAGTCGTGCGTGATGACTTCGTGGAGCCACTTGACTTGTTAGGTTTTTTGGTTACAACAG 495
consensus_8378#2 ------------------------------------------------------------
consensus_8378#0 GCTAAAAGTACCATAAATAATATATGAAAATACCTCCTCGAGATCTGAAAGGGAAGAATC 530
consensus_8378#1 GCT--------------------------------CCTCGAGATCTGAAAGGGAAGAATC 523
consensus_8378#2 ------------------------------------------------------------
consensus_8378#0 AGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAA 590
consensus_8378#1 AGATGATTCATCTTTTGTGTTGGATTTGCGTTTGTTCGACATAGCAGGTGATCCCTTTAA 583
consensus_8378#2 ------------------------------------------------------------
consensus_8378#0 GGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGTCCAGTGATTAAAACACTGAGT 650
consensus_8378#1 GGATTGGGTAGGATGCACCTACTAAGAGATGGTAGGGGTCCAGTGATGTATACACTAG-- 641
consensus_8378#2 ------------------------------------------------------------
consensus_8378#0 TGGAGAACCTCCAGAGTTAAGCACCACGGGACGGCAAAAAGC 692
consensus_8378#1 TGGAGAGCCTCCAGAGTTAAGCACCACGGGACGGCAAAAAG- 682
consensus_8378#2 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||