cluster # 8379

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Schistosoma mansoni
cluster # 8379 cluster # 8379 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8379#0 length = 850 sequences # 4

consensus_8379#1 length = 220 sequences # 1
consensus_8379#2 length = 204 sequences # 1

consensusID : consensus_8379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 850
fasta sequence

                              [GAAGAAGCTTTATTCACAAATCATTATACTTTTTCTTTAAAAATAAAAAAACAATCAAAGTCACACGAACTGAGTATAATTTGTAAGGGAGCAATGATCCTGAGTAATAAACTTAGAAAAGAATAACACATGAATAAACTCATTAGCTCATGGGATAATTATGAATCAGTAATTATTTTAAAAGTAGATGAAAACCCGTTTTGAAATATATTAATGATCAATTCAGAAAAAGAAAGACAACTACCAACAGTTGTTACAAGAGATCGAGTTTCATAAGAATACCTTTAACAAGATACAGTGTGCAGCACAAAAACACTATCGATTAAAAAATACACACACACACACAATTTATGGATATGTGGAGTGCTTCATGTGTGTTTATCAACAAACTCTACACATTCGCTCACACTCATACACACACACACACAGACACACCTAACGTACATACAAATCAATTGTGATGATAAGTTCATTACATCCTGTAATAAACAAAACAGGATATCAAATAAACATCACCCAAAGGAAGATACAGAATACAAGAGGTACCCACATAAACTTCAAACTAATGA-TAATAGATAACACAACAGTAAGAAAGTAACACAGAAAAGAGGTAACGACTGAAGACATTNGAAAAAGAAAAAAAACTAGACGTATTTTCATACTNGAANNTAGTAGGTGTNAATTAGTTTATTATAAAAATTTACAAAACATATTAGCCATAATAAACCATATTAACATTGGTAAAATCCATTGTGAAAATTTAATATACGTTNTTCTATTTTTAATAAACGGTCTAATTCATTATATNCATTAACATGGGGAATGGACAATTTGGTATGGTAAATTAAGA]

[+] EMBL CD074350             [GAAGAAGCTTTATTCACAAATCATTATACTTTTTCTTTAAAAATAAAAAAACAATCAAAGTCACACGAACTGAGTATAATTTGTAAGGGAGCAATGATCCTGAGTAATAAACTTAGAAAAGAATAACACATGAATAAACTCATTAGCTCATGGGATAATTATGAATCAGTAATTATTTTAAAAGTAGATGAAAACCCGTTTTGAAATATATTAATGATCAATTCAGAAAAAGAAAGACAACTACCAACAGTTGTTACAAGAGATCGAGTTTCATAAAAATACCTTTAACAAGATACAGGGGGCAGCACAAAAACACTATCGATTAAAAAATACACACCCCCACACAATTTATGGATATGGGGAGGGCTTCATGTGTGTTTATCAACAAACTCTACACATTCGCTCACACTCATACACACACACACACAGACACACCTAACGTACATACAAATCAATTGGGATGATAAGTTCATTACATCCTGTAATAAACAAAACAGGATATCAAATAAACATCACCCAAAGGAAGA                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD132643             [                                                                                                                TTAGAAAAGAATAACACATGAATAAACTCATTAACTCATGGTATAATTATGAATCAGTAATTATTTTAAAAGTAGATGAAAACCCGTTTTGAAATATATTAATGATCAATTCAGAAAAAGAAAGACAACTACCAACAGTTGTTACAAGAGATCGAGTTTCATAAGAATACCTTTAACAAGATACAGTGTGCAGCACAAAAACACTATCGATTAAAAAATACACACACACACACAATTTATGGATATGTGGAGTGCTTCATGTGTGTTTATCAACAAACTCTACACATTCGCTCACACTCATACACACACACACACAGACACACCTAACGTACATACAAATCAATTGTGATGATAAGTTCATTACATCCTGTAATAAACAAAACAGGATATCAAATAAACATCACCCANAGGAAGATACAGAATACAAGAGGTACCCACATAAACTTCAAACTAATGANNTATAGAT ACACAACAGTAAGAAAGT ACACAGAANAGAGGGTACGACTGAAGACATTNGAAAAAGAAAAAAAACTAGACGTATTTTCATACTNGAANNTAGTAGGTGTNAATTAGTTTATTATAAAAATTTACAAAACATATTAGCCATAATAAACCATATTAACATTGGTAAAATCCATTGTGAAAATTTAATATACGTTNTTCTATTTTTAATAAACGGTCTAATTCATTATATNCATTAACATGGGGAATGGACAATTTGGTATGGTAAATTAAGA]
[-] EMBL CD080438             [                                                                                                                                                                                                                                                          TTGTTACAAGAGATCGAGTTTCATAAGAATACCTTTAACAAGATACAGTGTGCAGCACAAAAACACTATCGATTAAAAAATACACACACACACACAATTTATGGATATGTGGAGTGCTTCATGTGTGTTTATCAACAAACTCTACACATTCGCTCACACTCATACACACACACACACAGACACACCTAACGTACATACAAATCAATTGTGATGATAAGTTCATTACATCCTGTAATAAACAAAACAGGATATCAAATAAACATCACCCAAAGGAAGATACAGAATACAAGAGGTACCCACATAAACTTCAAACTAATGA TAATAGATAACACAACAGTAAGAAAGTAACACAGAAAAGAGGTAACGACTG                                                                                                                                                                                                                                      ]
[-] EMBL CD084306             [                                                                                                                                                                                                                                                                                                                                                                                                      TCTACACATTCGCTCACACTCATACACACACACACACAGACACACCTAACGTACATACAAATCAATTGTGATGATAAGTTCATTACATCCTGTAATAAACCAAACAGGATATCAAATAAACATCACCCAAAGGAAGATACAGAATACAAGAGGTACCCACATAAACTTCAAACTAATGA TAATAGATAACACAACAGTAAGAAAGTAACACAGAAAAGAGGTAACGACTG                                                                                                                                                                                                                                      ]




>consensus_8379#0
GAAGAAGCTTTATTCACAAATCATTATACTTTTTCTTTAAAAATAAAAAAACAATCAAAG
TCACACGAACTGAGTATAATTTGTAAGGGAGCAATGATCCTGAGTAATAAACTTAGAAAA
GAATAACACATGAATAAACTCATTAGCTCATGGGATAATTATGAATCAGTAATTATTTTA
AAAGTAGATGAAAACCCGTTTTGAAATATATTAATGATCAATTCAGAAAAAGAAAGACAA
CTACCAACAGTTGTTACAAGAGATCGAGTTTCATAAGAATACCTTTAACAAGATACAGTG
TGCAGCACAAAAACACTATCGATTAAAAAATACACACACACACACAATTTATGGATATGT
GGAGTGCTTCATGTGTGTTTATCAACAAACTCTACACATTCGCTCACACTCATACACACA
CACACACAGACACACCTAACGTACATACAAATCAATTGTGATGATAAGTTCATTACATCC
TGTAATAAACAAAACAGGATATCAAATAAACATCACCCAAAGGAAGATACAGAATACAAG
AGGTACCCACATAAACTTCAAACTAATGATAATAGATAACACAACAGTAAGAAAGTAACA
CAGAAAAGAGGTAACGACTGAAGACATTNGAAAAAGAAAAAAAACTAGACGTATTTTCAT
ACTNGAANNTAGTAGGTGTNAATTAGTTTATTATAAAAATTTACAAAACATATTAGCCAT
AATAAACCATATTAACATTGGTAAAATCCATTGTGAAAATTTAATATACGTTNTTCTATT
TTTAATAAACGGTCTAATTCATTATATNCATTAACATGGGGAATGGACAATTTGGTATGG
TAAATTAAGA

consensusID : consensus_8379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [TTCATACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAAGCAATAATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTTTCTAATTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGGAAATGGACAATTTGGTATTGGTAAATTAAGAAATTTACATAATGGTTCCCAAC]

[-] EMBL CD080437             [TTCATACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAAGCAATAATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTTTCTAATTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGGAAATGGACAATTTGGTATTGGTAAATTAAGAAATTTACATAATGGTTCCCAAC]




>consensus_8379#1
TTCATACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAA
GCAATAATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTT
TCTAATTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGGAAATGGACAATTT
GGTATTGGTAAATTAAGAAATTTACATAATGGTTCCCAAC

consensusID : consensus_8379#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [TTCATACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAAGCAATAATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTTTCTAATTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGAAATGGACAATTTGGTATTGGTAAACCTCGTGCCGATT]

[-] EMBL CD084305             [TTCATACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAAGCAATAATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTTTCTAATTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGAAATGGACAATTTGGTATTGGTAAACCTCGTGCCGATT]




>consensus_8379#2
TTCATACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAA
GCAATAATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTT
TCTAATTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGAAATGGACAATTTG
GTATTGGTAAACCTCGTGCCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      GAAGAAGCTTTATTCACAAATCATTATACTTTTTCTTTAAAAATAAAAAAACAATCAAAG 60
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      TCACACGAACTGAGTATAATTTGTAAGGGAGCAATGATCCTGAGTAATAAACTTAGAAAA 120
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      GAATAACACATGAATAAACTCATTAGCTCATGGGATAATTATGAATCAGTAATTATTTTA 180
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      AAAGTAGATGAAAACCCGTTTTGAAATATATTAATGATCAATTCAGAAAAAGAAAGACAA 240
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      CTACCAACAGTTGTTACAAGAGATCGAGTTTCATAAGAATACCTTTAACAAGATACAGTG 300
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      TGCAGCACAAAAACACTATCGATTAAAAAATACACACACACACACAATTTATGGATATGT 360
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      GGAGTGCTTCATGTGTGTTTATCAACAAACTCTACACATTCGCTCACACTCATACACACA 420
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      CACACACAGACACACCTAACGTACATACAAATCAATTGTGATGATAAGTTCATTACATCC 480
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      TGTAATAAACAAAACAGGATATCAAATAAACATCACCCAAAGGAAGATACAGAATACAAG 540
                                                                                  

consensus_8379#1      ------------------------------------------------------------
consensus_8379#2      ------------------------------------------------------------
consensus_8379#0      AGGTACCCACATAAACTTCAAACTAATGATAATAGATAACACAACAGTAAGAAAGTAACA 600
                                                                                  

consensus_8379#1      -------------------------------------------------------TTCAT 5
consensus_8379#2      -------------------------------------------------------TTCAT 5
consensus_8379#0      CAGAAAAGAGGTAACGACTGAAGACATTNGAAAAAGAAAAAAAACTAGACGTATTTTCAT 660
                                                                             *****

consensus_8379#1      ACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAAGCAAT 65
consensus_8379#2      ACTGAAATAAGTTAGGTGTAAATTAGTTTATAATAAAAATTTACAAAACATATAAGCAAT 65
consensus_8379#0      ACTNGAANNTAGTAGGTGTNAATTAGTTTATTATAAAAATTTACAAAACATATTAGCCAT 720
                      ***  **     ******* *********** ********************* *** **

consensus_8379#1      AATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTTTCTAA 125
consensus_8379#2      AATAAACAATATTAACATTGGTAAAATCCATTGTGAAAATTTTAATATACGTTTTTCTAA 125
consensus_8379#0      AATAAACCATATTAACATTGGTAAAATCCATTGTGAAAATTT-AATATACGTTNTTCTAT 779
                      ******* ********************************** ********** ***** 

consensus_8379#1      TTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTGGAAATGGACAATTTGGTAT 185
consensus_8379#2      TTTTAATAAACGTCTTAATTCATTATATTCATTAACATGTG-AAATGGACAATTTGGTAT 184
consensus_8379#0      TTTTAATAAACGGTCTAATTCATTATATNCATTAACATGGG-GAATGGACAATTTGGTAT 838
                      ************   ************* ********** *  *****************

consensus_8379#1      TGGTAAATTAAGAAATTTACATAATGGTTCCCAAC 220
consensus_8379#2      TGGTAAACCTCGTGCCGATT--------------- 204
consensus_8379#0      -GGTAAATTAAGA---------------------- 850
                       ******    *