These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1052 fasta sequence [AATGCGTTTNGATGGGAGATAATCCTGACGTG-GTTGT-CTC-AATAATGTGACATATCANTTATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCACAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTTCTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAACCTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGGAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA] [-] EMBL CD130015 [AATGCGTTTNGATGGGAGATAATCCTGACGTG GTTGT CTCAAATAATGTGACATATCANTTATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCACAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTTCTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAACCTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGGAACGCATAAGT ] [+] EMBL CD082834 [ CCTGACGTGNGTTGTCCTC AATAATGTTACATATCATTTATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCACAAGGGCCATGAAAAAATGCACCTCGAGATGTTTTTGGTTGCATTTGTTAGTTTGCTTTTCTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAACCTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTNTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCG ] [-] EMBL CD077229 [ TGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA] [-] EMBL CD076557 [ TTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA] consensusID : consensus_8381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CGAGGCCAAAAATTCGGCACGAGGCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTANAACAGACATTTACAAATCCATGGGGATAAC] [+] EMBL CD082973 [CGAGGCCAAAAATTCGGCACGAGGCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTANAACAGACATTTACAAATCCATGGGGATAAC] consensusID : consensus_8381#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCAGTAAGTTACGCAATGTATTTTTAAAAACTCAGTTATACGATACACAGAAATCACCAGCATAAAGCCTGACACAAACGTGGGTCGCCCTAAGTTGTTATACCGCATTAACACGACGAGATAAACAGCGAAAACTCGAACTAATGTGTCAGGTATTATAGTGGATAAACTGAAGGTTGAGAATTCGAGACCCAAAGATAAAATGAAAAGGTGTATATAAAACAATACTGGAACTTATGATCT] [-] EMBL CD146515 [TGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCAGTAAGTTACGCAATGTATTTTTAAAAACTCAGTTATACGATACACAGAAATCACCAGCATAAAGCCTGACACAAACGTGGGTCGCCCTAAGTTGTTATACCGCATTAACACGACGAGATAAACAGCGAAAACTCGAACTAATGTGTCAGGTATTATAGTGGATAAACTGAAGGTTGAGAATTCGAGACCCAAAGATAAAATGAAAAGGTGTATATAAAACAATACTGGAACTTATGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8381#0 AATGCGTTTNGATGGGAGATAATCCTGACGTGGTTGTCTCAATAATGTGACATATCANTT 60 consensus_8381#1 ------------------------------------------------------------ consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 ATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCA 120 consensus_8381#1 ------------------------------------------------------------ consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 CAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTT 180 consensus_8381#1 ------------------------------------------------------------ consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 CTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAAC 240 consensus_8381#1 ------------------------------------------------------------ consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 CTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATT 300 consensus_8381#1 ---------------------------CGAGGCCAAAAATTCGGCACGAGG--CAAGATT 31 consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 CATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAA 360 consensus_8381#1 CATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAA 91 consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 GGAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATAC 420 consensus_8381#1 GAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATAC 151 consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 CGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGT 480 consensus_8381#1 CGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGT 211 consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 CAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTT 540 consensus_8381#1 CAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTT 271 consensus_8381#2 -----------------------------------TGGATTTATCTTTATTGGCATTGTT 25 ************************* consensus_8381#0 TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT 600 consensus_8381#1 TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT 331 consensus_8381#2 TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT 85 ************************************************************ consensus_8381#0 AGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCC----AGTTCGTCGACTTGATC 656 consensus_8381#1 AGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCC----AGTTCGTCGACTTGATC 387 consensus_8381#2 AGCTGCACAAATATCAG--TAAGTTACGCAATGTATTTTTAAAAACTCAGTTATACGATA 143 **************** **** * *** **** * ** * *** consensus_8381#0 CATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATC 716 consensus_8381#1 CATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATC 447 consensus_8381#2 CACAGAAATCACCAGCATA-AAGCCTGACACAAACGTGGGTCGCCCTAAGTTGTTATACC 202 ** ** ** ** ** * * ** * * * * * * * * * consensus_8381#0 GACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGT-TGGTGTATTAT--TG 773 consensus_8381#1 GACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGT-TGGTGTATTAT--TG 504 consensus_8381#2 GCATTAAC-ACGACGAGATAAACAGCGAAAACTCGAACTAATGTGTCAGGTATTATAGTG 261 * * ** * * *** * * * ** * ******* ** consensus_8381#0 GAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAA 833 consensus_8381#1 GAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTANAACAGACATTTACAA 564 consensus_8381#2 GATAAACTGAAGGTTGAGAAT-TCGAGACCCAAAGATAAAATGAAA--AGGTGTATATAA 318 ** * * ** *** ** * * * *** * ** * * * ** * ** ** consensus_8381#0 ATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGG 893 consensus_8381#1 ATCCATGGGGATAAC--------------------------------------------- 579 consensus_8381#2 AACAATACTGGAACTTATGATCT------------------------------------- 341 * * ** * consensus_8381#0 TCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTAC 953 consensus_8381#1 ------------------------------------------------------------ consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 AATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAA 1013 consensus_8381#1 ------------------------------------------------------------ consensus_8381#2 ------------------------------------------------------------ consensus_8381#0 ACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA 1052 consensus_8381#1 --------------------------------------- consensus_8381#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||