These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence [TAATTCGGCACGACGGNCAAACCTAATAGAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTCACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGCCATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC-TCCCATTGTTAGTAATAACCCTAAACAAACAGACATC-ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC-ATACCATTCTATAGTCTCAATCAACTTTAATTTCATTCTATTTATTTACAGTGTGATTTTAACTTTGAAAATGTATTACTTGCCTCTTCTTATCGCTT-AAATAATGTGAAATGA-TTATCAATCCACAAGC-ACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAAGCTTTTGC-TATCAC-AAACTGTATAAAA] [+] EMBL CD081689 [TAATTCGGCACGACGGNCAAACCTAATAGAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTCACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGCCATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC TCCCATTGTTAGTAATAACCCTAAACAAACAGACATC ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC ATACCATTCTATAGTCTCAATCAACTNTAATTTCATTCTATTTATTTACAGTGTGATTTTAACTNTGAAAATGTATTACTTGCCTCTTCTTATCGCTT AAATAATGTGAAATGA TTATCAATCCACAAGC ACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAAGCTTTTGC TATCAC AAACTGTATAA ] [-] EMBL CD138760 [ TATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTCACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGCCATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC TCCCATTGTTAGTAATAACCCTAAACAAACAGACATC ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC ATAC ] [+] EMBL AW146474 [ GGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC TCCCATTGTTAGTAATAACCCTAAACAAACAGACATCAACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGCCATAGG AAAGGAGGAAACTGCTTAACCTCATACTATACCATTCTATAGTCTCAATCAACTTTAATTTCAATCTATTTATTTACAGTGTGATTTTAACTTTGAAAATGTTTTACTTGCCTCTTCTTATC ] [-] EMBL AA999593 [ ATAAAAATGAATCTTCCCATTGTTAGTAATAACCCTAAACAAACAGACATC ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC ATACCATTCTATAGTCTCAATCAACTTTAATTTCATTCTATTTATTTACAGTGTGATTTTAACTTTGAAAATGTATTACTTGCCTCTTCTTATCGCTTAAAATAATGTG AATGATTTATCAATCCACAAGCAACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAAGCTTTTGCTTATCACAAAACTGTATAAAA] consensusID : consensus_8382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence [TTTCATAATACTCAAAGGTATAAAAGTGAAAGTACATCCAACAAAAATAGCTCGGAATGGGTTTCTACTTTGGCCAAGTTAGATCAACCACAGTTTGAAGCTGAAATGAGTCAGTTTTTTGATGGACATTCAACAACAGTAAGAACAGAACACATGACAACTAGTAAGTGCACTTCGAAAAGCAGTCAACAACCTGTTGTCTCTCAGTCTAATGAATTATCTTACCATGGACTTTTTGTGGGTGAAGGATGGCCTAGTCTCAAGCCCAATAAGAAAGGAGAGATAATACATAGTTCTGGAAAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCTAATTAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGTAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGGGGCCGATATCGAAGCTACAGAAAC] [+] EMBL CD115024 [TTTCATAATACTCAAAGGTATAAAAGTGAAAGTACATCCAACAAAAATAGCTCGGAATGGGTTTCTACTTTGGCCAAGTTAGATCAACCACAGTTTGAAGCTGAAATGAGTCAGTTTTTTGATGGACATTCAACAACAGTAAGAACAGAACACATGACAACTAGTAAGTGCACTTCGAAAAGCAGTCAACAACCTGTTGTCTCTCAGTCTAATGAATTATCTTACCATGGACTTTTTGTGGGTGAAGGATGGCCTAGTCTCAAGCCCAATAAGAAAGGAGAGATAATACATAGTTCTGGAAAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCTAATTAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGTAGAGAGCCATTTAGATTCAGAACAAA ] [+] EMBL CD138610 [ GGAGAGATAATACATAGTTCTGGAAAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCTAATAAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGGGGCCGATATCGAAGCTACAGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8382#0 ------------------------------------------------------------ consensus_8382#1 TTTCATAATACTCAAAGGTATAAAAGTGAAAGTACATCCAACAAAAATAGCTCGGAATGG 60 consensus_8382#0 ------------------------------------------------------------ consensus_8382#1 GTTTCTACTTTGGCCAAGTTAGATCAACCACAGTTTGAAGCTGAAATGAGTCAGTTTTTT 120 consensus_8382#0 ------------------------------------------------------------ consensus_8382#1 GATGGACATTCAACAACAGTAAGAACAGAACACATGACAACTAGTAAGTGCACTTCGAAA 180 consensus_8382#0 ------------------------------------------------------------ consensus_8382#1 AGCAGTCAACAACCTGTTGTCTCTCAGTCTAATGAATTATCTTACCATGGACTTTTTGTG 240 consensus_8382#0 ------------------------------------------------------------ consensus_8382#1 GGTGAAGGATGGCCTAGTCTCAAGCCCAATAAGAAAGGAGAGATAATACATAGTTCTGGA 300 consensus_8382#0 ------------------------------------TAATTCGGCACGACGGNCAAACCT 24 consensus_8382#1 AAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCT 360 * * ** ** ******* consensus_8382#0 AATAGAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATT 84 consensus_8382#1 AATTAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATT 420 *** ******************************************************* consensus_8382#0 GCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTT 144 consensus_8382#1 GTAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTT 480 * ********************************************************** consensus_8382#0 AATGCTTTTGGTACTCCTAAAAAAA-TCTCAGATACTCAATTGCCTCCAGTTCTCCAGGA 203 consensus_8382#1 AATGCTTTTGGTACTCCTAAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGA 540 ************************* ********************************** consensus_8382#0 TTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCAT 263 consensus_8382#1 TTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCAT 600 ************************************************************ consensus_8382#0 TGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAA 323 consensus_8382#1 TGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAA 660 ************************************************************ consensus_8382#0 GACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCT 383 consensus_8382#1 GACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCT 720 ************************************************************ consensus_8382#0 AAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTC 443 consensus_8382#1 AAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGGGGCCG 780 ****************************************************** * consensus_8382#0 ACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGC 503 consensus_8382#1 ATATCGAAGCTACAGAAAC----------------------------------------- 799 * * ** * * * consensus_8382#0 CATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAG 563 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 TCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCT 623 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 CTATGATAAAAATGAATCTCCCATTGTTAGTAATAACCCTAAACAAACAGACATCACTTC 683 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 CTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTA 743 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 ACCTCATACATACCATTCTATAGTCTCAATCAACTTTAATTTCATTCTATTTATTTACAG 803 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 TGTGATTTTAACTTTGAAAATGTATTACTTGCCTCTTCTTATCGCTTAAATAATGTGAAA 863 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 TGATTATCAATCCACAAGCACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAA 923 consensus_8382#1 ------------------------------------------------------------ consensus_8382#0 GCTTTTGCTATCACAAACTGTATAAAA 950 consensus_8382#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||