cluster # 8383

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Schistosoma mansoni
cluster # 8383 cluster # 8383 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8383#0 length = 664 sequences # 4

consensus_8383#1 length = 573 sequences # 1
consensus_8383#2 length = 466 sequences # 1

consensusID : consensus_8383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 664
fasta sequence

                              [GGAGCTGATTTCTCTGTGAGATTCTGTCCAGACTGAGTCTCAACACCTGGTAAACCTGACATTGCACGACTTTCTGATAAATATGAAGATATTCCAAGATAATGTGATGAATTAGAAAAGCTAAATAATGGCACATTACTTTGACCTTGATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTATTACTATTGCTTGAACTTGTAGTTATTGATGCAAAATTAAATGCTCCAATTCTTTTACGACCCATTAATGTATTTAAATCCACTTTTGTTAGATTTAATGAAGCACTAGAATTATCACCTCCTGGTGTAATATCCCCTCCACTAATAGTAGTATCTCTAATAGTTCGTGCTTGTAAATTAAGTAAACCATTNTTATTTGATGANAGTGACATTNCATTTAATTCACTTGGTNNGAATATATTTAAATGTNGTAATAAAATACAAATAACTCATATTGTACACAAGACCAGATATATGGAGTAGTCAAACC]

[-] EMBL CD130370             [GGAGCTGATTTCTCTGTGAGATTCTGTCCAGACTGAGTCTCAACACCTGGTAAACCTGACATTGCACGACTTTCTGATAAATATGAAGATATTCCAAGATAATGTGATGAATTAGAAAAGCTAAATAATGGCACATTACTTTGACCTTGATTAGTCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD120177             [                                                    AACCTGACATTGCACGACTTTCTGATAAATATGAAGATATTCCAAGATAATGTGATGAATTAGAAAAGCTAAATAATGGCACATTACTTTGACCTTGATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTAT                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD189227             [                                                           CATTGCACGACTTTCTGATAAATATGAAGATATTCCAAGATAATGTGATGAATTAGAAAAGCTAAATAATGGCACATTACTTTGACCTTGATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTATTACTATTGCTTGAACTTGTAGTTATTGATGCAAAATTAAATGCTCCAATTCTTTTACGACCCATTAATGTATTTAAATCCACTTTTGTTAGATTTAATGAAGCACTAGAATTATCACCTCCTGGTGTAATATCCCCTCCACTAATAGTAGTATCTCTAATAGTTCGTGCTTGTAAATTAAGTAAACCATTNTTATTTGATGANAGTGACATTNCATTTAATTCACTTGGTNNGAATATATTTAAATGTNGTAATAAAATACAAATAACTCATATTGTACACAAGACCAGATATATGGAGTAGTCAAACC]
[-] EMBL CD120122             [                                                                                                        TGATGAATTAGAAAAGCTAAATAATGGCACATTACTTTGACCTTGATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTAT                                                                                                                                                                                                                                                                                                                     ]




>consensus_8383#0
GGAGCTGATTTCTCTGTGAGATTCTGTCCAGACTGAGTCTCAACACCTGGTAAACCTGAC
ATTGCACGACTTTCTGATAAATATGAAGATATTCCAAGATAATGTGATGAATTAGAAAAG
CTAAATAATGGCACATTACTTTGACCTTGATTAGTAACAGCAATTGTATTAGTGAAGTTT
CCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACA
GACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTA
ATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTATTACTA
TTGCTTGAACTTGTAGTTATTGATGCAAAATTAAATGCTCCAATTCTTTTACGACCCATT
AATGTATTTAAATCCACTTTTGTTAGATTTAATGAAGCACTAGAATTATCACCTCCTGGT
GTAATATCCCCTCCACTAATAGTAGTATCTCTAATAGTTCGTGCTTGTAAATTAAGTAAA
CCATTNTTATTTGATGANAGTGACATTNCATTTAATTCACTTGGTNNGAATATATTTAAA
TGTNGTAATAAAATACAAATAACTCATATTGTACACAAGACCAGATATATGGAGTAGTCA
AACC

consensusID : consensus_8383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [AGGTGAGGGTTGAACCTATGAATTGTATGATAGTTGAATGATAAGTGAATATCATCCAACAGTTTTATAAACTGAAACTATAAAGGACACATATTAACTGTGAAATCTGGTGATACTAATTGGCTGGTCAAATCAAGTTAGATGGAATCTTCAACTAAGGTAGTTGATAGTCAAATGATTCAAGCAATAAGCTAACTCGCTTATTAGTTGATTATTTTGAGAGGCCCTAGAATTTCACAAGGTTTATTCAATTAACTTTAATTTAAGTGAATAGTTAACAGAAATACACTTAATCCAAATAACAGGCTTTATACAAGAGAAATAGATATTAAATGTATGAAGAAGTTCCAAACTGGATTGATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTATTACTATT]

[+] EMBL CD095913             [AGGTGAGGGTTGAACCTATGAATTGTATGATAGTTGAATGATAAGTGAATATCATCCAACAGTTTTATAAACTGAAACTATAAAGGACACATATTAACTGTGAAATCTGGTGATACTAATTGGCTGGTCAAATCAAGTTAGATGGAATCTTCAACTAAGGTAGTTGATAGTCAAATGATTCAAGCAATAAGCTAACTCGCTTATTAGTTGATTATTTTGAGAGGCCCTAGAATTTCACAAGGTTTATTCAATTAACTTTAATTTAAGTGAATAGTTAACAGAAATACACTTAATCCAAATAACAGGCTTTATACAAGAGAAATAGATATTAAATGTATGAAGAAGTTCCAAACTGGATTGATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATTTCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTATTACTATT]




>consensus_8383#1
AGGTGAGGGTTGAACCTATGAATTGTATGATAGTTGAATGATAAGTGAATATCATCCAAC
AGTTTTATAAACTGAAACTATAAAGGACACATATTAACTGTGAAATCTGGTGATACTAAT
TGGCTGGTCAAATCAAGTTAGATGGAATCTTCAACTAAGGTAGTTGATAGTCAAATGATT
CAAGCAATAAGCTAACTCGCTTATTAGTTGATTATTTTGAGAGGCCCTAGAATTTCACAA
GGTTTATTCAATTAACTTTAATTTAAGTGAATAGTTAACAGAAATACACTTAATCCAAAT
AACAGGCTTTATACAAGAGAAATAGATATTAAATGTATGAAGAAGTTCCAAACTGGATTG
ATTAGTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGTTTGA
CGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAATCTCGTATATTAGTAGTATT
TCCAGGAGTACTAATGGTAGAATTAGCATTAATAGTATTGGTAGTAGTAGTTGTAGTAGT
AGAAGTAGAAGAAGCAGTGGTACTATTACTATT

consensusID : consensus_8383#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [TAAATTATTCTAACATATTCTAGTCTGTAGACAATGTTGTACTTTGAATTACTGAGCAATAAAATAAAGCACTTGGCCCATATACAGTTACTAATCAATCCAGTTTGGAACTTCTTCATACATTTAATATCTATTTCTCTTGTATAAAGCCTGTTATTTGGATTAAGTGTATTTCTGTTAACTATTCACTTAAATTAAAGTTAATTGAATAAACCTTGTGAAATTCTAGGGCCTCTCAAAATAATCAACTAATAAGCGAGTTAGCTTATTGCTCGAATCATTTGACTATCAACTACCTTAGTTGAAGATTCCATCTAACTTGATTTGACCAGCCAATTAGTATCACCAGATTTCACAGTTAATATGTGTCCTTTATAGTTTCAGTTTATAAAACTGTTGGATGATATTCACTTATCATTCAACTATCATACAATTCATAGGTTCAACCCTCAACTTTTCTGTTATC]

[+] EMBL CD131807             [TAAATTATTCTAACATATTCTAGTCTGTAGACAATGTTGTACTTTGAATTACTGAGCAATAAAATAAAGCACTTGGCCCATATACAGTTACTAATCAATCCAGTTTGGAACTTCTTCATACATTTAATATCTATTTCTCTTGTATAAAGCCTGTTATTTGGATTAAGTGTATTTCTGTTAACTATTCACTTAAATTAAAGTTAATTGAATAAACCTTGTGAAATTCTAGGGCCTCTCAAAATAATCAACTAATAAGCGAGTTAGCTTATTGCTCGAATCATTTGACTATCAACTACCTTAGTTGAAGATTCCATCTAACTTGATTTGACCAGCCAATTAGTATCACCAGATTTCACAGTTAATATGTGTCCTTTATAGTTTCAGTTTATAAAACTGTTGGATGATATTCACTTATCATTCAACTATCATACAATTCATAGGTTCAACCCTCAACTTTTCTGTTATC]




>consensus_8383#2
TAAATTATTCTAACATATTCTAGTCTGTAGACAATGTTGTACTTTGAATTACTGAGCAAT
AAAATAAAGCACTTGGCCCATATACAGTTACTAATCAATCCAGTTTGGAACTTCTTCATA
CATTTAATATCTATTTCTCTTGTATAAAGCCTGTTATTTGGATTAAGTGTATTTCTGTTA
ACTATTCACTTAAATTAAAGTTAATTGAATAAACCTTGTGAAATTCTAGGGCCTCTCAAA
ATAATCAACTAATAAGCGAGTTAGCTTATTGCTCGAATCATTTGACTATCAACTACCTTA
GTTGAAGATTCCATCTAACTTGATTTGACCAGCCAATTAGTATCACCAGATTTCACAGTT
AATATGTGTCCTTTATAGTTTCAGTTTATAAAACTGTTGGATGATATTCACTTATCATTC
AACTATCATACAATTCATAGGTTCAACCCTCAACTTTTCTGTTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8383#0      GGAGCTGATTTCTCTGTGAGATTCTGTCCAGACTGAGTCTCAACACCTGGTAAACCTG-A 59
consensus_8383#1      ----------------------------------------AGGTGAGGGTTGAACCTATG 20
consensus_8383#2      ------------------------------------------------------------
                                                                                  

consensus_8383#0      CATTGCACGACTTTCTGATAAATATGAAGATATTCCAAGATAATGTGATGAATTAGAAAA 119
consensus_8383#1      AATTGTATGA-TAGTTGAATGATAAGTGAATATCATCCAACAGTTTTATAAACT-GAAAC 78
consensus_8383#2      -----------------------------------TAAATTATTCTAACATATTCTAGTC 25
                                                               * * * *   * *  *   

consensus_8383#0      GCTAAATAATGGCACATTA-CTTTGACCTTGATTAGTAACAGCAATTGTATTAGTGAAGT 178
consensus_8383#1      TATAAAGGACA-CATATTAACTGTGAAAT---CTGGTGATACTAATTG-GCTGGTCAAAT 133
consensus_8383#2      TGTAGACAATGTTGTA----CTTTGAA-----TTACTGA--GCAATAA-AATAAAGCACT 73
                        ** *  *      *    ** ***       *  * *    ***     *     * *

consensus_8383#0      TTCCACTTCCAATATTACCAATGTGGTTTGACGAAACATTTCCTGAGATTGTGCTAATAA 238
consensus_8383#1      CAAGTTAGATGGAATCTTCAACTAAGGTAGTTGATAG------TCAAATGATTCAAGCAA 187
consensus_8383#2      TGGCCCATATACAGTTACTAATCAATCCAGTTTG----------GAACTTCTTCATACAT 123
                                    *    **        *               *  *  * *    * 

consensus_8383#0      CAGACTGAGAATCTCGTATATTAGTAG--TATTTCCAGGAGTACTAATGGTAGAATTAGC 296
consensus_8383#1      TAAGCTAA----CTCGCTTATTAGTTGATTATTTTGAGAGGCCCTAGAATTTCA--CAAG 241
consensus_8383#2      TTAA----------TATCTATTTCT------CTTGTATAAAGCCTGTTATTTGGATTAAG 167
                                        ****  *       **  *      **     *      *  

consensus_8383#0      ATTAATAGTATTGGTAGTAGTAGTTGT-AGTAGTAGAAGTAGAAGAAGCAGTGGTACTAT 355
consensus_8383#1      GTTTATTCAATTAACTTTAATTTAAGTGAATAGTTAA--CAGAAATACACTTAATCCAAA 299
consensus_8383#2      TGTATTTCTGTTAACTATTCACTTAAATTAAAGTTAA--TTGAATAAACCTTG--TGAAA 223
                        *  *    **     *             ***  *    ***  *    *      * 

consensus_8383#0      TACTATTGCTTGAACTTGTAGTTATTGATGCAAAATTAAATGCTCCAATTCTTTTACGAC 415
consensus_8383#1      TAACAGGCTTTATACAAG-AGAAATAGATATTAAAT-GTATGAAGAAGTTCCAAACTGGA 357
consensus_8383#2      TTCTAGGGCCT---CTCAAAATAATCAACTAATAAGCGAGTTAGCTTATTGCT---CGAA 277
                      *   *     *   *    *   **  *     **     *       **       *  

consensus_8383#0      CCATTAATGTATTTAAATCCACTTTTGTTAGATTTAATGAAGCACTAGAATTATCACCTC 475
consensus_8383#1      TTGATTA-GTAACAGCAATTGTATTAGTGAAGTTTCCACTTCCAATATTACCAATGTGGT 416
consensus_8383#2      TCATTTG---ACTATCAACTACCTTAGTTGAAGATTCCATCTAACTTGATTTGACCAGCC 334
                          *     *     *      ** **      *        * *              

consensus_8383#0      CTGGTGTAATATCCCCTCCACTAATAGTAGTATCT--CTAATAGTTCGTGCTTGTAAATT 533
consensus_8383#1      TTGACGAAACATTTCCTGAGATTGTGCTAATAACAGACTGAGAAT-----CTCGTATATT 471
consensus_8383#2      AATTAGTATCACCAGATTTCACAGTTAATATGTGTCCTTTATAGTTTCAGTTTATAAAAC 394
                           * *  *     *       *     *       * * * *      *  ** *  

consensus_8383#0      AAGTAAACCATTNTTATTTGATGAN-AGTGACATTNCATTTAATTCACTTGGTNNGAATA 592
consensus_8383#1      A-GTAGTATTTCCAGGAGTACTAAT-GGTAGAATTAGCATTAATAGTATTGGTAGTAGTA 529
consensus_8383#2      TGTTGGATGATATTCACTTATCATTCAACTATCATACAATTCATAGGTTCAACCCTCAAC 454
                         *      *       *               *    ** **    *           

consensus_8383#0      TATTTAAATGTNGTAATAAAATACAAATAACTCATATTGTACACAAGACCAGATATATGG 652
consensus_8383#1      GTTGTAGTAGTAGAAGTAGAAGAAGCAGTGGTACTATTACTATT---------------- 573
consensus_8383#2      TTTTCTGTTATC------------------------------------------------ 466
                        *       *                                                 

consensus_8383#0      AGTAGTCAAACC 664
consensus_8383#1      ------------
consensus_8383#2      ------------