cluster # 8390

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Schistosoma mansoni
cluster # 8390 cluster # 8390 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8390#0 length = 451 sequences # 4

consensus_8390#1 length = 224 sequences # 2

consensusID : consensus_8390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 451
fasta sequence

                              [GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTGGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTATTCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTTTCAGAGTAATATTAGGACTAATACTATTTCA]

[+] EMBL CD083670             [GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTAGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTATTCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTTTCAGAGTAATATTAGGACTAATACTATTTCA]
[-] EMBL CD191299             [                                   GGCTTGGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATGGCGAAATCTTTGA                                                                                                                                  ]
[-] EMBL CD191248             [                                   GGCTTGGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGA                                                                                                                                  ]
[+] EMBL SM746                [                                                                           TTTACGAACTCGCCTGAGTGAATGCGGNTGGAGCGAAGAACTAAAAAGCCATTGNCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGNAGCTGAAATTA CCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAG TGTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTNGTGTCGGTATTCTGGA TTCTA TTTTCTCGCTAACC CCTGTCTTTATTAGTCTATCAGT                                        ]




>consensus_8390#0
GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTGGTCGCAGTGGAGAAAAAGA
AAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAA
AAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTT
GGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCT
ACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAA
ATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTAT
TCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTT
TCAGAGTAATATTAGGACTAATACTATTTCA

consensusID : consensus_8390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 224
fasta sequence

                              [ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTCTCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAGATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC]

[+] EMBL CD192401             [ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTCTCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAGATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC]
[+] EMBL CD192425             [ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTCTCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAGATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC]




>consensus_8390#1
ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTC
TCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGAT
AGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAG
ATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8390#0      GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTGGTCGCAGTGGAGAAAAAGA 60
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      AAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAA 120
consensus_8390#1      ----------------------ACCGACTGGGGTAATTTCAGCTACCA-AATCATCTACC 37
                                            **   *  * ** * * * ***      *  * ***  

consensus_8390#0      AAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTT 180
consensus_8390#1      GTTAGATTTTCAATCCCGCGTTCTCGAATA--ACATCTGAAATATGGAGATGGAGAGAGT 95
                           ***  * *       ***  ***      **   **** *   * * **     *

consensus_8390#0      GGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCT 240
consensus_8390#1      ATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACA-ATAG-AAGGCAAAA--T 151
                        *   * ** ***        * * * *    * *** * * * ** ** **** *  *

consensus_8390#0      ACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAA 300
consensus_8390#1      TATGGTTTAACTA------TATGTGATTAAA---ACAGAT-TTCAATGACT-CTAGGTTG 200
                        *** * ** *       * * ***  ***   ****** * *  ****   ****   

consensus_8390#0      ATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTAT 360
consensus_8390#1      ATGAGGCTGCGAAA--GTTAAATTAC---------------------------------- 224
                      **       ** **   ** * ** *                                  

consensus_8390#0      TCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTT 420
consensus_8390#1      ------------------------------------------------------------
                                                                                  

consensus_8390#0      TCAGAGTAATATTAGGACTAATACTATTTCA 451
consensus_8390#1      -------------------------------