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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1225 fasta sequence
[CTGTAGAACCGTTAAATTTCCATTTATCTCTTTGATGCTCGACATTACCCCAACTATTGTACACACTAGACTTCTGTGGCCATTGTTGCGTAGATTTTTGGTTAAAGTACCTATTTGAATCTGTACCTTGACTAACTCCCGTTCTTTTAGTATCAGCGTTTATAACAGAACTGTACATGCGAGGATCGTTCTTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGACTAGATGACTGCTCGTAAGATTGGGAAAGGGAATCATCCGGAAATTGTAAACTATTCGGTTGATTTCCACTTCCACTTTCGATCCTAATATTTCTTTCCGTTTCATATGAATTATCCATTCTAGATTGCTTAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAACTGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATCTAGGAGGCAGTTTGACAACTAATGTATCTGGATCTTTCGTATTGGTTGAGGCTTCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCANGTGGCGTATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCAGCTGGACCACTGAACAGATCGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACTTGGCGAACGAGATCATGTGGAGCATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTTGTTGACTATAATCTTTTTTTTTGGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTTGTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATGAACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGTCTGAGTGATTCGCACGATTTTCTTGACTGCTATGAGAAGGTCTAATAGGATTGAACAATGTTGGCATTCGTTGACCGGCAGAGCCAAATTGACATTCGGATTCAAACTTAGATTTTGTTTCACTATAACGTGTTTGTAAACTAGTTATTGCTTCAGATATTTCCATCTGAAGATTGCGATTTACTGCAGGAAAGTTGAATGATCT]
[+] EMBL CD114203 [CTGTAGAACCGTTAAATTTCCATTTATCTCTTTGATGCTCGACATTACCCCAACTATTGTACACACTAGACTTCTGTGGCCATTGTTGCGTAGATTTTTGGTTAAAGTACCTATTTGAATCTGTACCTTGACTAACTCCCGTTCTTTTAGTATCAGCGTTTATAACAGAACTGTACATGCGAGGATCGTTCTTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGACTAGATGACTGCTCGTAAGATTGGGAAAGGGAATCATCCGGAAATTGTAAACTATTCGGTTGATTTCCACTTCCACTTTCGATCCTAATATTTCTTTCCGTTTCATATGAATTATCCATTCTAGATTGCTTAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAACTGGCCGTCAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATCTAGGAGGCAGTTTGACAACTAATGTATCTGGATCTTTCGTATTGGTTGAGGCTTCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCANGTGGCGTATCGGGTAGACGAGGTGGATCCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAGGA ]
[-] EMBL CD114105 [ TTCGTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGATTAGACGACTGCTCGTAAGACTGGGAAAGGGAATCATCCGGAAATTGTCAACTATTCGGTTGATTTCCACTTCCACTTTCGATCCTAATATTCCTTTCCGTTTCATATGAATTATCCATTCTAGATAGCTTAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAACTGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATATAGGAGGCAGTTTGACAACTAATGTATGTGGATCTTTCGTATTGGTTGAGGCTTCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAAATCCAGCATCAGGTGGCGTATCGGGTAGACGAGGTGGATTCCAGCAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAG ]
[+] EMBL CD149147 [ anTTAAACTGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATCTAGGAGGCAGTTTGACAACTAATGTATCTGGATCTT ]
[+] EMBL CD184957 [ CGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATTACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCAGCTGGACCACTGAACAGATCGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACTTGGCGAACGAGATCATGTGGAGCATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTTGTTGACTATAATCTTTTTTTTTGGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTTGTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATGAACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGTCTG ]
[+] EMBL CD146774 [ GAACAGATCGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACCTGGCGAACGAGATCGTGTGGAGCATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTTGTTGACTATAATCTTTTTTTATTGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTTGTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATGAACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGTCTGAGTGATTCGCACGATTTTCTTGACTGCTATGAGAAGGTCTAATAGGATTGAACAATGTTGGCATTCGTTGACCGGCAGAGCCAAATTGACATTCGGATTCAAACTTAGATTTTGTTTCACTATAACGTGTTTGTAAACTAGTTATTGCTTCAGATATTTCCATCTGAAGATTGCGATTTACTGCAGGAAAGTTGAATGATCT]
consensusID : consensus_8393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[TTCGCAATGGTTGAGGCATCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCAGGTGGCGTATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATAACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCGCTCTGTCAATCGAATTCCC]
[-] EMBL CD114297 [TTCGCAATGGTTGAGGCATCGTGCAATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCAGGTGGCGTATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTCCATAACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCGCTCTGTCAATCGAATTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8393#0 CTGTAGAACCGTTAAATTTCCATTTATCTCTTTGATGCTCGACATTACCCCAACTATTGT 60
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 ACACACTAGACTTCTGTGGCCATTGTTGCGTAGATTTTTGGTTAAAGTACCTATTTGAAT 120
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 CTGTACCTTGACTAACTCCCGTTCTTTTAGTATCAGCGTTTATAACAGAACTGTACATGC 180
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 GAGGATCGTTCTTATTTTGAGGGTCGTCAGGAAACATATTATTGAATTGACTAGATGACT 240
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 GCTCGTAAGATTGGGAAAGGGAATCATCCGGAAATTGTAAACTATTCGGTTGATTTCCAC 300
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 TTCCACTTTCGATCCTAATATTTCTTTCCGTTTCATATGAATTATCCATTCTAGATTGCT 360
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 TAGGACCTTGCCATTGGTCCTGTGCGAGAAATTGGTTTGCTGAGAGAGGATCAGTTAAAC 420
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 TGGCCGACAAATAACTGTTTTGATCATTTCTTGAGTAAGTACCAGGAGCAGAATTCGATC 480
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 TAGGAGGCAGTTTGACAACTAATGTATCTGGATCTTTCGTATTGGTTGAGGCTTCGTGCA 540
consensus_8393#1 -----------------------------------TTCGCAATGGTTGAGGCATCGTGCA 25
**** * ********** *******
consensus_8393#0 ATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCANGTGGCG 600
consensus_8393#1 ATCTTTTGGAAGCTTCATAAAGTTGGGTTAAAATTTGTGTAATTCCAGCATCAGGTGGCG 85
***************************************************** ******
consensus_8393#0 TATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTC 660
consensus_8393#1 TATCGGGTAGACGAGGTGGATTCCAACAATGAGTACTTTGATTAACATGAGACAAATTTC 145
************************************************************
consensus_8393#0 CATTACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCAGCTGGACCACTGAACAGAT 720
consensus_8393#1 CATAACTCATAGCGGTTGAATTAGTAGGACATAAGTTACCGCTCTGTCAATCGAATTCCC 205
*** ************************************ * * * ***
consensus_8393#0 CGCGTAGTGATGAATAAGCTTGTTTGATTTCATTGACTTGGCGAACGAGATCATGTGGAG 780
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 CATTCATAGGATTCTCTTTGTCTGAGGCATCCCAGTCATCAGATGTTTTGCTAGTCCTTT 840
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 GTTGACTATAATCTTTTTTTTTGGGACGATTGTTACTAGGAATGACTTGGGATAGTTGTT 900
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 GTCGTGTTTGCCAGTCAAGGAATTCTTGAGAAACAGGTGATGAGTGTGGATAAGATGATG 960
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 AACGAGCTATTCGATTTAAACGTCGATTCATATTAGATATCATTGACCATCTAGAGATGT 1020
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 CTGAGTGATTCGCACGATTTTCTTGACTGCTATGAGAAGGTCTAATAGGATTGAACAATG 1080
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 TTGGCATTCGTTGACCGGCAGAGCCAAATTGACATTCGGATTCAAACTTAGATTTTGTTT 1140
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 CACTATAACGTGTTTGTAAACTAGTTATTGCTTCAGATATTTCCATCTGAAGATTGCGAT 1200
consensus_8393#1 ------------------------------------------------------------
consensus_8393#0 TTACTGCAGGAAAGTTGAATGATCT 1225
consensus_8393#1 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||