cluster # 8395

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Schistosoma mansoni
cluster # 8395 cluster # 8395 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8395#0 length = 811 sequences # 5

consensus_8395#1 length = 312 sequences # 1

consensusID : consensus_8395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 811
fasta sequence

                              [GGTACGTAACATTGTGAGCTGACGAGTGCTCA-TG-ATTCTAA-ACTTTCGGGAATATAACCTAGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTCCATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCCTCATATATGAAATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAATAAGTCCTAAGTCGTTTCAGAAATATAAAAAT]

[+] EMBL CD178752             [GGTACGTAACATTGTGAGCTGACGAGTGCTCAGTGTATTCTAATACTTTCGGGAATATAACCTAGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAG                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD079426             [                         tTGTTGA TG ATTCTAA ACTTTCGGGAATATAACCTAGATGCGTTCAGTACCTTTACGATCTTT AATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTCCATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCC                                                                                                     ]
[+] EMBL SMAA25634            [                                                          AACCTAGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCACCCAAAGATACTTGTACCTGTATGTATTGTCACCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD193976             [                                                                                                                                                                                            TACTTCCTTTTAAGCTTGATTATAATAATATCACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTG                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD073699             [                                                                                                                                                                                                                                              CATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTCCTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTCCATCGAACAACTCACTCCGTATTGTCTCGCTTTTATTACTGTTGCTTTCCTCATATATGAAATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAATAAGTCCTAAGTCGTTTCAGAAATATAAAAAT]




>consensus_8395#0
GGTACGTAACATTGTGAGCTGACGAGTGCTCATGATTCTAAACTTTCGGGAATATAACCT
AGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACA
GTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAAT
CGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTC
CCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATA
CAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCG
CCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCC
CAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTT
CATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTT
CGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTA
CGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTC
CATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCCTCATATATGA
AATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAAT
AAGTCCTAAGTCGTTTCAGAAATATAAAAAT

consensusID : consensus_8395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAACAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTCCATCGAA]

[+] EMBL CD156698             [CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAACAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTCCATCGAA]




>consensus_8395#1
CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTC
GTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAACAGTAT
GCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAAT
CAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAG
ATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCAT
TTTTCCATCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8395#0      GGTACGTAACATTGTGAGCTGACGAGTGCTCATGATTCTAAACTTTCGGGAATATAACCT 60
consensus_8395#1      ------------------------------------------------------------
                                                                                  

consensus_8395#0      AGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACA 120
consensus_8395#1      ------------------------------------------------------------
                                                                                  

consensus_8395#0      GTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAAT 180
consensus_8395#1      ------------------------------------------------------------
                                                                                  

consensus_8395#0      CGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTC 240
consensus_8395#1      ------------------------------------------------------------
                                                                                  

consensus_8395#0      CCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATA 300
consensus_8395#1      ------------------------------------------------------------
                                                                                  

consensus_8395#0      CAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCG 360
consensus_8395#1      ---------------CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCG 45
                                     *********************************************

consensus_8395#0      CCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCC 420
consensus_8395#1      CCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCC 105
                      ************************************************************

consensus_8395#0      CAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTT 480
consensus_8395#1      CAGTACTAA----------------------------------------CAGTATGCCTT 125
                      *********                                        ***********

consensus_8395#0      CATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTT 540
consensus_8395#1      CATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTT 185
                      ************************************************************

consensus_8395#0      CGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTA 600
consensus_8395#1      CGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTA 245
                      ************************************************************

consensus_8395#0      CGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTC 660
consensus_8395#1      CGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTC 305
                      ******************************************** ***************

consensus_8395#0      CATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCCTCATATATGA 720
consensus_8395#1      CATCGAA----------------------------------------------------- 312
                      *******                                                     

consensus_8395#0      AATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAAT 780
consensus_8395#1      ------------------------------------------------------------
                                                                                  

consensus_8395#0      AAGTCCTAAGTCGTTTCAGAAATATAAAAAT 811
consensus_8395#1      -------------------------------