These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 811 fasta sequence [GGTACGTAACATTGTGAGCTGACGAGTGCTCA-TG-ATTCTAA-ACTTTCGGGAATATAACCTAGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTCCATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCCTCATATATGAAATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAATAAGTCCTAAGTCGTTTCAGAAATATAAAAAT] [+] EMBL CD178752 [GGTACGTAACATTGTGAGCTGACGAGTGCTCAGTGTATTCTAATACTTTCGGGAATATAACCTAGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAG ] [+] EMBL CD079426 [ tTGTTGA TG ATTCTAA ACTTTCGGGAATATAACCTAGATGCGTTCAGTACCTTTACGATCTTT AATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTCCATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCC ] [+] EMBL SMAA25634 [ AACCTAGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACAGTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAATCGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCACCCAAAGATACTTGTACCTGTATGTATTGTCACCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTC ] [+] EMBL CD193976 [ TACTTCCTTTTAAGCTTGATTATAATAATATCACTCAGCGCTCTTAATCCCATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTG ] [-] EMBL CD073699 [ CATTCCCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATACAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTCCTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTCCATCGAACAACTCACTCCGTATTGTCTCGCTTTTATTACTGTTGCTTTCCTCATATATGAAATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAATAAGTCCTAAGTCGTTTCAGAAATATAAAAAT] consensusID : consensus_8395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAACAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTCCATCGAA] [+] EMBL CD156698 [CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCGCCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCCCAGTACTAACAGTATGCCTTCATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTTCGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTACGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTCCATCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8395#0 GGTACGTAACATTGTGAGCTGACGAGTGCTCATGATTCTAAACTTTCGGGAATATAACCT 60 consensus_8395#1 ------------------------------------------------------------ consensus_8395#0 AGATGCGTTCAGTACCTTTACGATCTTTCAATGACTTTTTAGGCTTTGGCGCTCGATACA 120 consensus_8395#1 ------------------------------------------------------------ consensus_8395#0 GTATACCCAGAGGATGTAAATGGAATGAACGAATGGTTTCAAATCTAATTTATTATCAAT 180 consensus_8395#1 ------------------------------------------------------------ consensus_8395#0 CGAATTACTTCCTTTTAAGCTTGATTATAATAATATTACTCAGCGCTCTTAATCCCATTC 240 consensus_8395#1 ------------------------------------------------------------ consensus_8395#0 CCGTATTAACAGGACTTCTTGTGATATGCTTACCCTTGATGATTCTCCTATTTTTAGATA 300 consensus_8395#1 ------------------------------------------------------------ consensus_8395#0 CAACAACCCTTAACACCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCG 360 consensus_8395#1 ---------------CCATTAACCAACCAAAGATACTTGTACCTGTATGTATTGTCATCG 45 ********************************************* consensus_8395#0 CCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCC 420 consensus_8395#1 CCATGTTACTGATTCGTTTCATATCTCGAATAATCCTTTTCTTTTGTGTTCTACTTGTCC 105 ************************************************************ consensus_8395#0 CAGTACTAAGTAAGTTTCAACGTGAAATAAATATAATGATTGAAATCAGCAGTATGCCTT 480 consensus_8395#1 CAGTACTAA----------------------------------------CAGTATGCCTT 125 ********* *********** consensus_8395#0 CATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTT 540 consensus_8395#1 CATGCCCTCTGTAGACAACGCAATTTAAAGAACAGAGTTTGTAAACTTGTGGAATCAGTT 185 ************************************************************ consensus_8395#0 CGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTA 600 consensus_8395#1 CGCATTGGAGAACAAAGAACATTAATGGGATATATGCTGGAAGTATTTGGTGTAGATGTA 245 ************************************************************ consensus_8395#0 CGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAANAAGGATGCATTTTTC 660 consensus_8395#1 CGACTGCTTACTATCGATAATTAGTTGCAGATCATCTCGATTAAAAAGGATGCATTTTTC 305 ******************************************** *************** consensus_8395#0 CATCGAACAACTCACTCCGTATTGNCTCGCTTTTATTACTGNTGCTTTCCTCATATATGA 720 consensus_8395#1 CATCGAA----------------------------------------------------- 312 ******* consensus_8395#0 AATACTTCTATTGTTTCTGTAAACTTCAGATTTATTTATTGCATGAATACTTCACCAAAT 780 consensus_8395#1 ------------------------------------------------------------ consensus_8395#0 AAGTCCTAAGTCGTTTCAGAAATATAAAAAT 811 consensus_8395#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||