These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1812 fasta sequence [TTTGGTCGAGATGACTCTTTGTTTGAATTTATGCTGAATTGAGTAGTTTTATTTGTGCTTACCGTAGAACATATTTTAACATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAAAACCAGAGTGTTCTGGTCCTGCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGCGTTCTGAAAATGTTGCTATCAGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCACAATTGCAGAAGGGATCTGCTTGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCATGGGGTCGACATAAACAGGTCAAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGTCTGTTGAAATAAATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAGAGCAGTGTCGTGCGGCTGTAGATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAGCCATCTACCCCGCCATTTCTTACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAACTGGGTCTCCTTTTGCAATAATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATTTACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTTTGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGTGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACATGTTTTGATGCAGCTTATCCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAATCACTTCTAACTGCAATGGCTTCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATATATTCGCACCATCTAGTCCATACATGACCGGTATATCTCAGCCATCATTCACGATTCCGTATAGTACTTCACCATCATTAATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAATAGACCCCAGNA-GTCCTCAGCTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTTTGTCTCAACCTTTTCCTGTTAGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCAGACAACAACCACCAACTTTAAATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTGAAGATGTGGTATCTGAAATAAACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGAATATGGCTGGGTCAGGACCATTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTTATATAGCACCTCTTCTTGCTACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTATAATTTTACCAG] [+] EMBL CD112176 [TTTGGTCGAGATGACTCTTTGTTTGAATTTATGCTGAATTGAGTAGTTTTATTTGTGCTTACCGTAGAACATATTTTAACATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAAAACCAGAGTGTTCTGGTCCTGCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGCGTTCTGAAAATGTTGCTATCAGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCACAATTGCAGAAGGGATCTGCTTGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCATGGGGTCGACATAAACAGGTCAAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGT ] [+] EMBL CD154477 [ AAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGTCTGTTGAAATAAATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAGAGCAGTGTCGTGCGGCTGTAGATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAGCCATCTACCCCGCCATTTCTTACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAACTGGGTCTCCTTTTGCAATAATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATTTACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGTGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGC ] [+] EMBL CD091393 [ TACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTTTGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGTGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACATGTTTTGATGCAGCTTATCCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAATCACTTCTAACTGCAATGGCTTCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATATATTCGCACCATCTAGTCCATACATGACCGGTATATCTCAGCCATCATTCACGATTCCGTATAGTACTTCACCATCATTAATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAATAGACCCCAGNA GTCCTCAGCTTGCTACACTTTACCCTGGCA ] [+] EMBL CD184205 [ GTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCCACAGCCAGCTTTGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGCGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACA ] [-] EMBL CD166284 [ GCCATCATTCACGATTCCGTATAGTACTTCACCATCATTAATGGGTGGTAATGGTGGGTATCTTGTTGGTGTTCCTCAAATAGA CCCAGGAGGTCCTCAGCTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTTTGTCTCAACCTTTTCCTGTTAGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCAGACAACAACCACCAACTTTAAATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTGAAGATGTGGTATCTGAAATAAACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGAATATGGCTGGGTCAGGACCATTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTTATATAGCACCTCTTCTTGCTACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTATAATTTTACCAG] consensusID : consensus_8411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGAGAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAATGATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAACCAGAGTGTTCTGGTCCTGCTGCT] [-] EMBL CD068331 [ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGAGAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAATGATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAACCAGAGTGTTCTGGTCCTGCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8411#0 -----------------------------TTTGGTCGAGATGACTCTTTGTTT------- 24 consensus_8411#1 ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGA 60 **** * * ** * consensus_8411#0 GAATTTAT-GCTGAATTGAGTAGTTTTATTTGTGCTTACCGTAGAACAT---ATTTTAAC 80 consensus_8411#1 GAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAAT 120 ** * ** ** * * * * * * ** ** ** * * ** consensus_8411#0 ATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTA 140 consensus_8411#1 GATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTA 180 * * ************************************************ consensus_8411#0 ACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAAAACCAGAGTGTTCTGGTCCT 200 consensus_8411#1 ACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAA-CCAGAGTGTTCTGGTCCT 239 ************ **************************** ****************** consensus_8411#0 GCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGCGTTCTGAAAATGTTGCTATC 260 consensus_8411#1 GCTGCT------------------------------------------------------ 245 ***** consensus_8411#0 AGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCACAATTGCAGAAGGGATCTGCT 320 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCATGGGGTCGACATAAACAGGTC 380 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 AAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTC 440 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 CGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGTCTGTTGAAATA 500 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 AATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAGAGCAGTGTCGTGCGGCTGTA 560 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 GATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAGCCATCTACCCCGCCATTTCT 620 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAACTGGGTCTCCTTTTGCAATA 680 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 ATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATTTACGCTTGCCTCCTGGCCGT 740 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 GGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTT 800 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAA 860 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 GCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTA 920 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 GATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGG 980 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTTTGCCAGAGTATGGGCAAGGA 1040 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGTGGAGGGGGTGCAAGT 1100 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 GGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAA 1160 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 AGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACATGTTTTGATGCAGCTTAT 1220 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 CCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAATCACTTCTAACTGCAATGGCT 1280 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATATATTCGCACCATCTAGTCCA 1340 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TACATGACCGGTATATCTCAGCCATCATTCACGATTCCGTATAGTACTTCACCATCATTA 1400 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 ATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAATAGACCCCAGNAGTCCTCAG 1460 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 CTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTTTGTCTCAACCTTTTCCTGTT 1520 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 AGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCAGACAACAACCACCAACTTTA 1580 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 AATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTGAAGATGTGGTATCTGAAATA 1640 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 AACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGAATATGGCTGGGTCAGGACCA 1700 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 TTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTTATATAGCACCTCTTCTTGCT 1760 consensus_8411#1 ------------------------------------------------------------ consensus_8411#0 ACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTATAATTTTACCAG 1812 consensus_8411#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||