|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1075 fasta sequence
[TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGTAAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACAGGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATATACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAGTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGT-ATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT]
[+] EMBL CD079114 [TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGTAAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACAGGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATATACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAGTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGT ATGAT ]
[-] EMBL CD073567 [ TACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTA TTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT]
consensusID : consensus_8412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence
[TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGAGCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTGCCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA]
[+] EMBL CD188509 [TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGAGCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTGCCGACACCGTTACGCCGATGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAGGA ]
[-] EMBL CD155997 [ CGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGTGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGGAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACT ]
[-] EMBL CD156112 [ CGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACT ]
[-] EMBL CD061687 [ CGGGAATCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCTAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACTTTTTCTGGTGACTTAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8412#0 -----------------------------------------------------------T 1
consensus_8412#1 TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGA 60
consensus_8412#0 GCACTACTGACAA----AGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCG 57
consensus_8412#1 GCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTG 120
** * *** * ** * * ** * ** * ** * * * * ** * *
consensus_8412#0 TGTAAACAAATACGATGGC-------AATCCCAGCACTGTATGTTAAACACTATGAGATG 110
consensus_8412#1 CCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCA 180
* ** **** * * **** ** ** * *** *
consensus_8412#0 GGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAA- 169
consensus_8412#1 TCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGG 240
** * ** *** * ** * ** ** * * *** ** *
consensus_8412#0 CTGACTACACAGGTCGATTTAATGGAT--GATAATTCTCTCGTTCTTAACTTTGTAATTC 227
consensus_8412#1 CCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGT-CAAGTA 299
* * ** ** * * ** * * * * * ** * ** *
consensus_8412#0 CATATGGTTA-TATACGTTCATGTTCTCGGC---TAGTTTGGTTTCGATTACATTTGTGG 283
consensus_8412#1 AAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAAC 359
* ****** *** ** ** ** *** * * * * *** **
consensus_8412#0 GTTT-GTTTTATTTAAA-GTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTT 341
consensus_8412#1 CCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGT-GGACATTATGACGAATTC 418
* * * * * * ** * * * * ** *** ** ** **
consensus_8412#0 TTTTTCAATTACA------GTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCT 395
consensus_8412#1 CTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCT 478
* * * *****************************************
consensus_8412#0 GACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAG 455
consensus_8412#1 GACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAG 538
************************************************************
consensus_8412#0 TTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTG 515
consensus_8412#1 TTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTG 598
************************************************************
consensus_8412#0 TCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAAT 575
consensus_8412#1 TCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAAT 658
****************************** *****************************
consensus_8412#0 AATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATT 635
consensus_8412#1 AATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATT 718
************************************************************
consensus_8412#0 TAGTATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAG 695
consensus_8412#1 AGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAG 778
********************************************************
consensus_8412#0 CATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCA 755
consensus_8412#1 CA---------------------------------------------------------- 780
**
consensus_8412#0 ACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCT 815
consensus_8412#1 ------------------------------------------------------------
consensus_8412#0 GATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAA 875
consensus_8412#1 ------------------------------------------------------------
consensus_8412#0 GACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAA 935
consensus_8412#1 ------------------------------------------------------------
consensus_8412#0 ATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTT 995
consensus_8412#1 ------------------------------------------------------------
consensus_8412#0 GAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTC 1055
consensus_8412#1 ------------------------------------------------------------
consensus_8412#0 ATACTTTTTAATAAATTATT 1075
consensus_8412#1 --------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||