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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 965 fasta sequence
[GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG--ATTTAGA--TTGTGGAACGCTGC--ATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCGTGCCG]
[+] EMBL CD073909 [GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG ATTTAGA TTGTGGAACGCTGC ATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGG ]
[-] EMBL CD079647 [ nGCCCAATTCGGAAGNNNTTTAGANNTTGTGGAACGCTGCNNATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCGTGCCG]
consensusID : consensus_8414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence
[ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA]
[-] EMBL CD079993 [ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA]
[+] EMBL CD155440 [ TGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTCGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCA ]
[-] EMBL CD069465 [ ATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCCAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAAC ]
consensusID : consensus_8414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTGTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAAGGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC]
[-] EMBL CD077776 [CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTGTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAAGGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8414#0 GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT 60
consensus_8414#1 -ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT 59
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT 120
consensus_8414#1 TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT 119
consensus_8414#2 --------------------------------------------------------CTTA 4
*
consensus_8414#0 CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA 180
consensus_8414#1 CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA 179
consensus_8414#2 CACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACA---ATAGGTGAATGCTGTGAAG 61
**** * * *** ** *** * * * * *** *
consensus_8414#0 ATGAGTCGCTTGCATTCATTTTAAGGGTAAC-GTTGAAAACAGT-CGTCGTAGCCTTATG 238
consensus_8414#1 ATGAGTCGCTTGCATTCATTTTAAGGGTAAC-GTTGAAAACAGT-CGTCGTAGCCTTATG 237
consensus_8414#2 AAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTG 121
* ** ** ** *** **** * * ** * ** *** * * * *** **
consensus_8414#0 AACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCAT 298
consensus_8414#1 AACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCAT 297
consensus_8414#2 -------TCGAATATG-CAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATT 173
* ** * **** * *** * * * **** ****** * * *
consensus_8414#0 ACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACC 358
consensus_8414#1 ACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACC 357
consensus_8414#2 ATCTAAAGG-GAGATTCATATCCTCATATGAAGTA--AGGATAAACACACGACTAGAGTT 230
* *** * ** ** * * ** ** * * * **** * *
consensus_8414#0 ATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGG 418
consensus_8414#1 ATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGG 417
consensus_8414#2 -TGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAG--GATACTTCTGATAGACCAAGG 287
* * * **** *** *** * * ** * * *** *** * **
consensus_8414#0 AAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACT 478
consensus_8414#1 AAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACT 477
consensus_8414#2 AGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC---------------- 331
* ** ** *** * ** * ** **
consensus_8414#0 ATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGG 538
consensus_8414#1 ATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGG 537
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 AAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAA-GTAATGATTAGCTGATTAA 597
consensus_8414#1 AAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA 597
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 GAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTT 657
consensus_8414#1 ------------------------------------------------------------
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 TAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGT 717
consensus_8414#1 ------------------------------------------------------------
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 AGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTA 777
consensus_8414#1 ------------------------------------------------------------
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 TCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTC 837
consensus_8414#1 ------------------------------------------------------------
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 CAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTT 897
consensus_8414#1 ------------------------------------------------------------
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 TTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCC 957
consensus_8414#1 ------------------------------------------------------------
consensus_8414#2 ------------------------------------------------------------
consensus_8414#0 TCGTGCCG 965
consensus_8414#1 --------
consensus_8414#2 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||