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Schistosoma mansoni
cluster # 8414 cluster # 8414       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8414#0 length = 965 sequences # 2  
consensus_8414#1 length = 597 sequences # 3  
consensus_8414#2 length = 331 sequences # 1  

consensusID : consensus_8414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 965
fasta sequence
                              [GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG--ATTTAGA--TTGTGGAACGCTGC--ATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCGTGCCG]

[+] EMBL CD073909             [GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG  ATTTAGA  TTGTGGAACGCTGC  ATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGG                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD079647             [                                                                                                                                                                                                                                                                                                                                                                                                                      nGCCCAATTCGGAAGNNNTTTAGANNTTGTGGAACGCTGCNNATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCGTGCCG]


>consensus_8414#0 GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA ATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAA CGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATAC TAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCAT CCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAA GATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTAT TTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAA ACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAG CAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAA CTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGA TTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCT CTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAG AGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTC CATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCG TGCCG



consensusID : consensus_8414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 597
fasta sequence
                              [ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA]

[-] EMBL CD079993             [ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA]
[+] EMBL CD155440             [                                                                                                                                    TGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTCGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCA                                                     ]
[-] EMBL CD069465             [                                                                                                                                                                        ATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCCAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAAC                                                                                                      ]


>consensus_8414#1 ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTT TTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTC ACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAA TGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAAC GGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACT AAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATC CTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG ATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATT TAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAA CTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA



consensusID : consensus_8414#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence
                              [CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTGTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAAGGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC]

[-] EMBL CD077776             [CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTGTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAAGGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC]


>consensus_8414#2 CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAA GAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTT GTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAA GGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCG CAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTT GCAAACAACCCTCGTGCCGAATTCTTGCCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8414#0      GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT 60
consensus_8414#1      -ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT 59
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT 120
consensus_8414#1      TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT 119
consensus_8414#2      --------------------------------------------------------CTTA 4
                                                                                * 

consensus_8414#0      CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA 180
consensus_8414#1      CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA 179
consensus_8414#2      CACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACA---ATAGGTGAATGCTGTGAAG 61
                      ****    *     *   ***  **  ***   * *      *   *  ***   *    

consensus_8414#0      ATGAGTCGCTTGCATTCATTTTAAGGGTAAC-GTTGAAAACAGT-CGTCGTAGCCTTATG 238
consensus_8414#1      ATGAGTCGCTTGCATTCATTTTAAGGGTAAC-GTTGAAAACAGT-CGTCGTAGCCTTATG 237
consensus_8414#2      AAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTG 121
                      * ** **  ** ***   **** *  * **  * ** ***   * *   *    *** **

consensus_8414#0      AACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCAT 298
consensus_8414#1      AACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCAT 297
consensus_8414#2      -------TCGAATATG-CAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATT 173
                              * ** *   **** * ***   *  * *  ****   ****** * *    *

consensus_8414#0      ACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACC 358
consensus_8414#1      ACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACC 357
consensus_8414#2      ATCTAAAGG-GAGATTCATATCCTCATATGAAGTA--AGGATAAACACACGACTAGAGTT 230
                      *   ***   *   **   **  * *   **  **   *  *    * ****  * *   

consensus_8414#0      ATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGG 418
consensus_8414#1      ATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGG 417
consensus_8414#2      -TGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAG--GATACTTCTGATAGACCAAGG 287
                       * * *   **** ***   *** * *   ** *     *  *** ***    *    **

consensus_8414#0      AAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACT 478
consensus_8414#1      AAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACT 477
consensus_8414#2      AGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC---------------- 331
                      *    **   **    ***    *  **   *  ** **                     

consensus_8414#0      ATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGG 538
consensus_8414#1      ATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGG 537
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      AAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAA-GTAATGATTAGCTGATTAA 597
consensus_8414#1      AAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA 597
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      GAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTT 657
consensus_8414#1      ------------------------------------------------------------
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGT 717
consensus_8414#1      ------------------------------------------------------------
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      AGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTA 777
consensus_8414#1      ------------------------------------------------------------
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTC 837
consensus_8414#1      ------------------------------------------------------------
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      CAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTT 897
consensus_8414#1      ------------------------------------------------------------
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCC 957
consensus_8414#1      ------------------------------------------------------------
consensus_8414#2      ------------------------------------------------------------
                                                                                  

consensus_8414#0      TCGTGCCG 965
consensus_8414#1      --------
consensus_8414#2      --------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)