These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 965 fasta sequence [GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG--ATTTAGA--TTGTGGAACGCTGC--ATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCGTGCCG] [+] EMBL CD073909 [GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAG ATTTAGA TTGTGGAACGCTGC ATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGG ] [-] EMBL CD079647 [ nGCCCAATTCGGAAGNNNTTTAGANNTTGTGGAACGCTGCNNATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAAGTAATGATTAGCTGATTAAGAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTTTAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGTAGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTATCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCCTCGTGCCG] consensusID : consensus_8414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence [ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA] [-] EMBL CD079993 [ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATTTTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTTCACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA] [+] EMBL CD155440 [ TGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTCGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGGAAACTCA ] [-] EMBL CD069465 [ ATGTGTTAGCAATGAGTCGCTTGCATTCATTTTAAGGGTAACGTTGAAAACAGTCGTCGTAGCCTTATGAACGGATCCAAACACAACAGCAACAACTGAACAAACCCAACACAAGACATTAAATGGCATACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACCATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGGAAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACTATTTAAAACATACGAAAC ] consensusID : consensus_8414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTGTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAAGGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC] [-] EMBL CD077776 [CTTACACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTGTCGAATATGCAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATTATCTAAAGGGAGATTCATATCCTCATATGAAGTAAGGATAAACACACGACTAGAGTTTGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAGGATACTTCTGATAGACCAAGGAGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8414#0 GACTTTATTACATTAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT 60 consensus_8414#1 -ACTTTATTACAAAAACGACGATAAATACAAAATATGTGCTCAAGCATATGATCATTATT 59 consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT 120 consensus_8414#1 TTTAATCAAATTAGTCATTTTTATCGTGATTGCCTGGAGCACTCGTTGATGTATTCTGTT 119 consensus_8414#2 --------------------------------------------------------CTTA 4 * consensus_8414#0 CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA 180 consensus_8414#1 CACTCATTGTCTTTGAAGTATTCTTCTTAGATAAGATGCGGTTTACTAGATGTGTTAGCA 179 consensus_8414#2 CACTTCCAGAGCCGGTGATATGTTTGGTAGCAGAAACA---ATAGGTGAATGCTGTGAAG 61 **** * * *** ** *** * * * * *** * consensus_8414#0 ATGAGTCGCTTGCATTCATTTTAAGGGTAAC-GTTGAAAACAGT-CGTCGTAGCCTTATG 238 consensus_8414#1 ATGAGTCGCTTGCATTCATTTTAAGGGTAAC-GTTGAAAACAGT-CGTCGTAGCCTTATG 237 consensus_8414#2 AAGACTCTTTTCCATCAGTTTTGAAAGGAANAGATGTAAATGATGCAGAGAGATCTTTTG 121 * ** ** ** *** **** * * ** * ** *** * * * *** ** consensus_8414#0 AACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCAT 298 consensus_8414#1 AACGGATCCAAACACAACAGCAACAACTGAACAAACCAAACACAAGACATTAAATGGCAT 297 consensus_8414#2 -------TCGAATATG-CAGCTAGAACACGATTATCTGAACAGTCGACATTCAGTTTATT 173 * ** * **** * *** * * * **** ****** * * * consensus_8414#0 ACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACC 358 consensus_8414#1 ACTAAAATCTGGTGTTGGCATTGTGACCAGAGATACGGGAGTGTGTAGACGAACAAAACC 357 consensus_8414#2 ATCTAAAGG-GAGATTCATATCCTCATATGAAGTA--AGGATAAACACACGACTAGAGTT 230 * *** * ** ** * * ** ** * * * **** * * consensus_8414#0 ATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGG 418 consensus_8414#1 ATCCTGTGGCGCAGAATGAGTTGTATTGAAAAACTGACTGTAACTACTGGCCCAATTCGG 417 consensus_8414#2 -TGCCGCATCGCAAAATCCTTTGAACTCCGAACCAAG--GATACTTCTGATAGACCAAGG 287 * * * **** *** *** * * ** * * *** *** * ** consensus_8414#0 AAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACT 478 consensus_8414#1 AAGATTTAGATTGTGGAACGCTGCATGTTTTGTTTTGTTTAAGTAGTCTATTTGTTCACT 477 consensus_8414#2 AGACGTTCTTTTTGCAAACAACCCTCGTGCCGAATTCTTGCCTC---------------- 331 * ** ** *** * ** * ** ** consensus_8414#0 ATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGG 538 consensus_8414#1 ATTTAAAACATACGAAACAGTTGCTGCAGGAAGGAAAAAGCCGTGATTGGCGTCGGGAGG 537 consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 AAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACATAA-GTAATGATTAGCTGATTAA 597 consensus_8414#1 AAACTCATTCCAGCGTTGTAAAACTTTCCGAAACACACCTCGTGCCGAATCTTGGCTCGA 597 consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 GAGCAGGCAAGGTGATTACTAATTCAATACTGCCCATACGTTTCCTAGCCAAACTTGGTT 657 consensus_8414#1 ------------------------------------------------------------ consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 TAACTGCCAACCATCTTGGGGTAATCACTGTCTTGTTTTGCGTTTTGGGATCTAAACTGT 717 consensus_8414#1 ------------------------------------------------------------ consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 AGATTTTTAAGGAACTGAAAAAGACTTGTGTGTACCACGGAATTAGATCAAAATAAACTA 777 consensus_8414#1 ------------------------------------------------------------ consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 TCTCTAGATTGAAATTAGCTCTACTAGTAAGGAAAGCTTTGACTCCACCCCTTACACTTC 837 consensus_8414#1 ------------------------------------------------------------ consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 CAGAGCCGGTGATATGTTTGGTAGCAGAAACAATAGGTGAATGCTGTGAAGAAGACTCTT 897 consensus_8414#1 ------------------------------------------------------------ consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 TTCCATCAGTTTTGAAAGGAAAAGATGTAAATGATGCAGAGAGATNTTTTGTCGAGTTCC 957 consensus_8414#1 ------------------------------------------------------------ consensus_8414#2 ------------------------------------------------------------ consensus_8414#0 TCGTGCCG 965 consensus_8414#1 -------- consensus_8414#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||