These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1080 fasta sequence [CTCCGAGCCAAAAATTCGGCACGAGGCTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAG-TTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGAACATTTCTGACCAATATAGATAAGAATTCTGTTTTAGCAAGAGAAATTGTTTTGAAATCTAAAATACCCTTAGAATTATGTTTGACATCAAATGTCAAGTCGAAAGCTGTTGAAAACTATGAATCTCATCATATAAACTATTGGATGAACAAGAAACATCCTATTTGCATTTGTACGGATGATAAAAGCCTATTTGATTGTACACTATCAGGTGAATTTCAACTATCTGTTGAACGTTGTCATTTGAATAACGAACAATTGTTTCAAATATTAATGAACTCAGTAAATATGGCGTTTTGCAGTGAGAACGTGAAGAAACAATTGTCTCATAAAATCAGAGAATATTTTAATAGTTTTATATTTGATGATTTAAACAAAAAATAATATTAACTTTGTAAAAAATGTTTTCTTGTTAAGTTATGACAAATAAATT] [+] EMBL CD081427 [CTCCGAGCCAAAAATTCGGCACGAGGCTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAG TTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGAAC ] [+] EMBL CD097971 [ GTTTGGCATTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAG TTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGA ] [-] EMBL CD075253 [ gcTCAGTTTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGAACATTTCTGACCAATATAGATAAGAATTCTGTTTTAGCAAGAGAAATTGTTTTGAAATCTAAAATACCCTTAGAATTATGTTTGACATCAAATGTCAAGTCGAAAGCTGTTGAAAACTATGAATCTCATCATATAAACTATTGGATGAACAAGAAACATCCTATTTGCATTTGTACGGATGATAAAAGCCTATTTGATTGTACACTATCAGGTGAATTTCAACTATCTGTTGAACGTTGTCATTTGAATAACGAACAATTGTTTCAAATATTAATGAACTCAGTAAATATGGCGTTTTGCAGTGAGAACGTGAAGAAACAATTGTCTCATAAAATCAGAGAATATTTTAATAGTTTTATATTTGATGATTTAAACAAAAAATAATATTAACTTTGTAAAAAATGTTTTCTTGTTAAGTTATGACAAATAAATT] consensusID : consensus_8416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GTACGCGAATTTTATTCCCACCCCTTATATCTGTCAGAGGAAGTTATGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGT] [+] EMBL CD083382 [GTACGCGAATTTTATTCCCACCCCTTATATCTGTCAGAGGAAGTTATGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGT] consensusID : consensus_8416#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [ACATTTATTTTTCTCAGTTAGTCACGAACTCTTACTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATTGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAA] [+] EMBL CD181569 [ACATTTATTTTTCTCAGTTAGTCACGAACTCTTACTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATTGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAA] consensusID : consensus_8416#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [CTTTCTGGGAGTAGTAGGTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCGAAATATTATTTCAGGTTGTGATTTTGAAACGTGGAACGGCGATATAGATCGGTGTTTTGATGCTTTTCGAACAATCCACAGATTAATTGAAACACCAGAAATCCTGGAGAGAGCTACAATTTCCGTTATTGAAGAATTTCATCAAGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTA] [+] EMBL CD180172 [CTTTCTGGGAGTAGTAGGTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCGAAATATTATTTCAGGTTGTGATTTTGAAACGTGGAACGGCGATATAGATCGGTGTTTTGATGCTTTTCGAACAATCCACAGATTAATTGAAACACCAGAAATCCTGGAGAGAGCTACAATTTCCGTTATTGAAGAATTTCATCAAGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8416#0 -------CTCCGAGCCAAAAATT-CGGCACGAGGCTCGTCCACACTT---ATTGTTTCAG 49 consensus_8416#1 ------------GTACGCGAATT-TTATTCCCACCCCTTATATCTGTCAGAGGAAGTTAT 47 consensus_8416#2 ACATTTATTTTTCTCAGTTAGTCACGAACTCTTACTCGTCCACACTT---ATTGTTTCAG 57 consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 GTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATCG 109 consensus_8416#1 GTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAA-CAATCAGAATGAATCG 106 consensus_8416#2 GTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATTG 117 consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 TTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTT 169 consensus_8416#1 TTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTT 166 consensus_8416#2 TTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTT 177 consensus_8416#3 ----------------------------------------CTTTCTGGGAGTAGTAGGTT 20 ************* *** ** consensus_8416#0 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTT 229 consensus_8416#1 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTT 226 consensus_8416#2 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTT 237 consensus_8416#3 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCGAAATATTATTTCAGGTTG 80 ***************************************** ***************** consensus_8416#0 TGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTT 289 consensus_8416#1 TGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTT 286 consensus_8416#2 TGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTT 297 consensus_8416#3 TGATTTTGAAACGTGGAACGGCGATATAGATCGGTGTT--TTGATGCTTTTCGAACAATC 138 ********************* ************ ** * * ** * * * consensus_8416#0 CATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGAC--CAGTTCCAACTC 347 consensus_8416#1 CATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGAC--CAGTTCCAACTC 344 consensus_8416#2 CATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGAC--CAGTTCCAACTC 355 consensus_8416#3 CA-CAGATTAAT-TGAAACACCAGAAATCCTGGAGAGAGCTACAATTTCCGTTATTGAAG 196 ** *** *** * * * * *** *** * *** * * *** consensus_8416#0 ATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGT 407 consensus_8416#1 ATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGT 404 consensus_8416#2 ATCGTTCTTATTTGAATGCAGTAATCAA-------------------------------- 383 consensus_8416#3 AATTTCATCAAGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTA------------- 243 * * * * **** * * consensus_8416#0 TTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTA 467 consensus_8416#1 TTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTA 464 consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 TCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGTT 527 consensus_8416#1 TCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGT- 523 consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 CTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGAT 587 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 CAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGA 647 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 ACATTTCTGACCAATATAGATAAGAATTCTGTTTTAGCAAGAGAAATTGTTTTGAAATCT 707 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 AAAATACCCTTAGAATTATGTTTGACATCAAATGTCAAGTCGAAAGCTGTTGAAAACTAT 767 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 GAATCTCATCATATAAACTATTGGATGAACAAGAAACATCCTATTTGCATTTGTACGGAT 827 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 GATAAAAGCCTATTTGATTGTACACTATCAGGTGAATTTCAACTATCTGTTGAACGTTGT 887 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 CATTTGAATAACGAACAATTGTTTCAAATATTAATGAACTCAGTAAATATGGCGTTTTGC 947 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 AGTGAGAACGTGAAGAAACAATTGTCTCATAAAATCAGAGAATATTTTAATAGTTTTATA 1007 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 TTTGATGATTTAAACAAAAAATAATATTAACTTTGTAAAAAATGTTTTCTTGTTAAGTTA 1067 consensus_8416#1 ------------------------------------------------------------ consensus_8416#2 ------------------------------------------------------------ consensus_8416#3 ------------------------------------------------------------ consensus_8416#0 TGACAAATAAATT 1080 consensus_8416#1 ------------- consensus_8416#2 ------------- consensus_8416#3 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||