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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1080 fasta sequence
[CTCCGAGCCAAAAATTCGGCACGAGGCTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAG-TTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGAACATTTCTGACCAATATAGATAAGAATTCTGTTTTAGCAAGAGAAATTGTTTTGAAATCTAAAATACCCTTAGAATTATGTTTGACATCAAATGTCAAGTCGAAAGCTGTTGAAAACTATGAATCTCATCATATAAACTATTGGATGAACAAGAAACATCCTATTTGCATTTGTACGGATGATAAAAGCCTATTTGATTGTACACTATCAGGTGAATTTCAACTATCTGTTGAACGTTGTCATTTGAATAACGAACAATTGTTTCAAATATTAATGAACTCAGTAAATATGGCGTTTTGCAGTGAGAACGTGAAGAAACAATTGTCTCATAAAATCAGAGAATATTTTAATAGTTTTATATTTGATGATTTAAACAAAAAATAATATTAACTTTGTAAAAAATGTTTTCTTGTTAAGTTATGACAAATAAATT]
[+] EMBL CD081427 [CTCCGAGCCAAAAATTCGGCACGAGGCTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAG TTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGAAC ]
[+] EMBL CD097971 [ GTTTGGCATTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAG TTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGA ]
[-] EMBL CD075253 [ gcTCAGTTTCTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGATCAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGAACATTTCTGACCAATATAGATAAGAATTCTGTTTTAGCAAGAGAAATTGTTTTGAAATCTAAAATACCCTTAGAATTATGTTTGACATCAAATGTCAAGTCGAAAGCTGTTGAAAACTATGAATCTCATCATATAAACTATTGGATGAACAAGAAACATCCTATTTGCATTTGTACGGATGATAAAAGCCTATTTGATTGTACACTATCAGGTGAATTTCAACTATCTGTTGAACGTTGTCATTTGAATAACGAACAATTGTTTCAAATATTAATGAACTCAGTAAATATGGCGTTTTGCAGTGAGAACGTGAAGAAACAATTGTCTCATAAAATCAGAGAATATTTTAATAGTTTTATATTTGATGATTTAAACAAAAAATAATATTAACTTTGTAAAAAATGTTTTCTTGTTAAGTTATGACAAATAAATT]
consensusID : consensus_8416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[GTACGCGAATTTTATTCCCACCCCTTATATCTGTCAGAGGAAGTTATGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGT]
[+] EMBL CD083382 [GTACGCGAATTTTATTCCCACCCCTTATATCTGTCAGAGGAAGTTATGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAACAATCAGAATGAATCGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGTTTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTATCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGT]
consensusID : consensus_8416#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[ACATTTATTTTTCTCAGTTAGTCACGAACTCTTACTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATTGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAA]
[+] EMBL CD181569 [ACATTTATTTTTCTCAGTTAGTCACGAACTCTTACTCGTCCACACTTATTGTTTCAGGTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATTGTTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTTTGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTTCATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGACCAGTTCCAACTCATCGTTCTTATTTGAATGCAGTAATCAA]
consensusID : consensus_8416#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence
[CTTTCTGGGAGTAGTAGGTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCGAAATATTATTTCAGGTTGTGATTTTGAAACGTGGAACGGCGATATAGATCGGTGTTTTGATGCTTTTCGAACAATCCACAGATTAATTGAAACACCAGAAATCCTGGAGAGAGCTACAATTTCCGTTATTGAAGAATTTCATCAAGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTA]
[+] EMBL CD180172 [CTTTCTGGGAGTAGTAGGTTGGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCGAAATATTATTTCAGGTTGTGATTTTGAAACGTGGAACGGCGATATAGATCGGTGTTTTGATGCTTTTCGAACAATCCACAGATTAATTGAAACACCAGAAATCCTGGAGAGAGCTACAATTTCCGTTATTGAAGAATTTCATCAAGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8416#0 -------CTCCGAGCCAAAAATT-CGGCACGAGGCTCGTCCACACTT---ATTGTTTCAG 49
consensus_8416#1 ------------GTACGCGAATT-TTATTCCCACCCCTTATATCTGTCAGAGGAAGTTAT 47
consensus_8416#2 ACATTTATTTTTCTCAGTTAGTCACGAACTCTTACTCGTCCACACTT---ATTGTTTCAG 57
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 GTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATCG 109
consensus_8416#1 GTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAA-CAATCAGAATGAATCG 106
consensus_8416#2 GTTTCTCAGTCAACGGCGATCACAAAGCGTTTAGTGAACGTAAACAATCAGAATGAATTG 117
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 TTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTT 169
consensus_8416#1 TTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTT 166
consensus_8416#2 TTTTTACCACAACTTGCCGAAAATTGAGTTGCATGCCCACCTTTCTGGGAGTATTAGTTT 177
consensus_8416#3 ----------------------------------------CTTTCTGGGAGTAGTAGGTT 20
************* *** **
consensus_8416#0 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTT 229
consensus_8416#1 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTT 226
consensus_8416#2 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCAAAATATTATTTCAGGTTT 237
consensus_8416#3 GGCGTTTTGGAAGCGTGAATCAATTACCAACCGCAATATTCGAAATATTATTTCAGGTTG 80
***************************************** *****************
consensus_8416#0 TGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTT 289
consensus_8416#1 TGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTT 286
consensus_8416#2 TGATTTTGAAACGTGGAACGGGGATATAGATCGGCTACAATTTCCGTTATTGAAGAATTT 297
consensus_8416#3 TGATTTTGAAACGTGGAACGGCGATATAGATCGGTGTT--TTGATGCTTTTCGAACAATC 138
********************* ************ ** * * ** * * *
consensus_8416#0 CATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGAC--CAGTTCCAACTC 347
consensus_8416#1 CATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGAC--CAGTTCCAACTC 344
consensus_8416#2 CATCAGGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTACGAC--CAGTTCCAACTC 355
consensus_8416#3 CA-CAGATTAAT-TGAAACACCAGAAATCCTGGAGAGAGCTACAATTTCCGTTATTGAAG 196
** *** *** * * * * *** *** * *** * * ***
consensus_8416#0 ATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGT 407
consensus_8416#1 ATCGTTCTTATTTGAATGCAGTAATCAAAGGAATACAGAGCGCACCGAGTATCTAGAAGT 404
consensus_8416#2 ATCGTTCTTATTTGAATGCAGTAATCAA-------------------------------- 383
consensus_8416#3 AATTTCATCAAGAAAATGTCATTCTTTTGGAATTGAGGACTACGTTA------------- 243
* * * * **** * *
consensus_8416#0 TTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTA 467
consensus_8416#1 TTTGATGAAGCGTTAATTACTTTAGAGCTAGCAAAGGAATACTATTCTAATGGATTGGTA 464
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 TCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGTT 527
consensus_8416#1 TCAGGTATTGATCTCAGCGGGAATCCACTAGTAGGAAGTCTATGTGATTTCGCTTCAGT- 523
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 CTTAATACAGCGCGGTCGTATGGTTTAAAAACAACTGTACATATAGCTGAAGCAGCTGAT 587
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 CAAAGTGAAGATTGGTGTAAATTTCTTAGACTTCATTTGCCAGATCGATTGGGGCACGGA 647
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 ACATTTCTGACCAATATAGATAAGAATTCTGTTTTAGCAAGAGAAATTGTTTTGAAATCT 707
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 AAAATACCCTTAGAATTATGTTTGACATCAAATGTCAAGTCGAAAGCTGTTGAAAACTAT 767
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 GAATCTCATCATATAAACTATTGGATGAACAAGAAACATCCTATTTGCATTTGTACGGAT 827
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 GATAAAAGCCTATTTGATTGTACACTATCAGGTGAATTTCAACTATCTGTTGAACGTTGT 887
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 CATTTGAATAACGAACAATTGTTTCAAATATTAATGAACTCAGTAAATATGGCGTTTTGC 947
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 AGTGAGAACGTGAAGAAACAATTGTCTCATAAAATCAGAGAATATTTTAATAGTTTTATA 1007
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 TTTGATGATTTAAACAAAAAATAATATTAACTTTGTAAAAAATGTTTTCTTGTTAAGTTA 1067
consensus_8416#1 ------------------------------------------------------------
consensus_8416#2 ------------------------------------------------------------
consensus_8416#3 ------------------------------------------------------------
consensus_8416#0 TGACAAATAAATT 1080
consensus_8416#1 -------------
consensus_8416#2 -------------
consensus_8416#3 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||