These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 659 fasta sequence [ACACCGGATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAAAAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTTAGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATCAAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGTCGGCTTTTACGCAAGCA-TAAAGCTC-TTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCAGATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCC] [+] EMBL CD090496 [ACACCGGATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAAAAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTTAGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATCAAAAAAAAAAGACAGCTTATGTTCAGGCCATACTTGGGACATGATCTAAGTTCAGTGAAGCGGCTTTTACGCAAGGATTAAAGCTCTTTGAA AAAAATGGTAAATGCATTGAGCTGGTTT ] [+] EMBL CD170912 [ GATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAAAAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTTCGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATCAAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGTCGGCTTTTACGCAAGCA TAAAGCTC TTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCACTTATGGG ] [+] EMBL CD119629 [ GTGGATCAAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGTCGGCTTTTACGCAAGCA TAAAGCTC TTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTATAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAA ] [-] EMBL CD189143 [ AAGAGTGTCAGATGCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCNAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCAGATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCC] [-] EMBL CD187537 [ GCATCGAGCTGTTTTAGAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAAATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACGGAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCAGATGTCTGATTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGA ] consensusID : consensus_8417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [CATTGGCCGTTTCTGAGTTGGATAACGGAGCGTAAACAACGGCTGATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCACATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTATGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCCAGACAGTGATGCCACAGCTATAGCACATCGTTTAGA] [+] EMBL CD180184 [CATTGGCCGTTTCTGAGTTGGATAACGGAGCGTAAACAACGGCTGATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGATGATGCACATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTATGCCTTAAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAAAACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCCAGACAGTGATGCCACAGCTATAGCACATCGTTTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8417#0 ACACCGGATATGGGTGCATACAAACCGATTGAACCCGAAATAGTTCAGGAACGCACTGAA 60 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 AAATTACGTGCAGCATACGATGATTTACATGACTTGGCGGAGGCTCGTCTTCGTGGTCTT 120 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 AGAGATTCACGAGAAATGTGGCAATTTTTCTGGGATATGGAGGACGAAAAGGAGTGGATC 180 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 AAAGAAAAAAGCCAGCTTATGTCCAGTCCAGACTTGGGACATGATCTAAGTTCAGTGAGT 240 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 CGGCTTTTACGCAAGCATAAAGCTCTTGAAGAAGAGTGTCAGATGCATCGAGCTGTTTTA 300 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 GAAGATGCATTGAAGCATGGTGAACAACTTATTACTGATGGAAATCAAGGTTATGAGCAA 360 consensus_8417#1 ------------------------------------------------------------ consensus_8417#0 ATATCCCAGCGTATCGTTGAAATGAATCAATTATGGGGTCAATTAGTTGACCTGATAACG 420 consensus_8417#1 -------------------------------CATTGG--CCGTTTCTGAGTTGGATAACG 27 ** ** * ** * ******* consensus_8417#0 GAGCGTAAACAACGCCTAATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGAT 480 consensus_8417#1 GAGCGTAAACAACGGCTGATTGAGTCACAGGATTTCTTCCAACTAATGGCAGACTGTGAT 87 ************** ** ****************************************** consensus_8417#0 GATGCAGATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTAGGCCTT 540 consensus_8417#1 GATGCACATGTCTGGTTGACTGATCAACAACGCATTGTTAGCAACGAAGATGTATGCCTT 147 ****** *********************************************** ***** consensus_8417#0 AAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAA 600 consensus_8417#1 AAACAAGCCACAACAGTGTCTTTGCTGAAAAACAACCAGGAAGTTATGGATAATCTTCAA 207 ************************************************************ consensus_8417#0 AACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCC- 659 consensus_8417#1 AACTACCAAGAAACAATATCTCAACTTAATCAAGATGCATCACGAGTTTCTGATTACCCA 267 *********************************************************** consensus_8417#0 ----------------------------------- consensus_8417#1 GACAGTGATGCCACAGCTATAGCACATCGTTTAGA 302 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||