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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 826 fasta sequence
[TATCGAAGGTTCCTGANAATCTCCCATCCTGTCTAGTGAATTAGCAATAATTTTCCGGGCAGAGGACATCAAAGGAGTATGAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTATTCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAA-ACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAGGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAACTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTAAAAAAGTTTTTCAGTGATACTAAAAATACCTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAA]
[-] EMBL AW017181 [TATCGAAGGTTCCTGANAATCTCCCATCCTGTCTAGTGAATTAGCAATAATTTTCCGGGCAGAGGACATCAAAGGAGTATGAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTATTCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAA ACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTAC ]
[-] EMBL CD191988 [ GAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTATTCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTC ]
[+] EMBL CD163328 [ TAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAATACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGGTGTAACCACGCAATTTATAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGATGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAGGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAACTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTAAAAAAGTTTTTCAGTGATACTAAAAATACCTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAA]
consensusID : consensus_8418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence
[AGTATGAAAGCTCCATAACTGGTAATCGTTGGTTCGACGTATCCANATTGACCAGCATGATTTCAATANAGTCGATGCCTCTTTATTTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTTAAAACATATAGCGTGAATTATATGAGATAGAAACCTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATA]
[-] EMBL CD071634 [AGTATGAAAGCTCCATAACTGGTAATCGTTGGTTCGACGTATCCANATTGACCAGCATGATTTCAATANAGTCGATGCCTCTTTATTTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTTAAAACATATAGCGTGAATTATATGAGATAGAAACCTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATA]
[-] EMBL CD071635 [ TTTTTGCATAGCTTATGCTCGGACACGAATAATATGCAGACATTCTTCATACGTCAGGGCACCCGAAAACACTAAAGCACTGATCTCGCCAAGACTAAACCATGTTGTAACCACGCAATTTTTAATTAACTTAAAACATATAGCGTGAATTATATGAGATATAAACCTCTTCATTTTATTCTAGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTTTTAATATTTCATTAGCACATTGAACCATTTGCTTTATCTTTGGTAACTTTATA]
consensusID : consensus_8418#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[TAAACCCTGCTGTAACCACGCAANTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAATTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAATCACTAGAAAAATTGCACCGTCTGAATGGATTGTGTGGTAAGCACTCGTAAACGATCGGTTTGGTAATATAAAATGTAGAATTCCGCATTTAATGAAAACGTTTAAAGATTGGTGATATCTTTTTCAACAC]
[-] EMBL AI977700 [TAAACCCTGCTGTAACCACGCAANTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAATTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAATCACTAGAAAAATTGCACCGTCTGAATGGATTGTGTGGTAAGCACTCGTAAACGATCGGTTTGGTAATATAAAATGTAGAATTCCGCATTTAATGAAAACGTTTAAAGATTGGTGATATCTTTTTCAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8418#0 TATCGAAGGTTCCTGANAATCTCCCATCCTGTCTAGTGAATTAGCAATAATTTTCCGGGC 60
consensus_8418#1 ------------------------------------------------------------
consensus_8418#2 ------------------------------------------------------------
consensus_8418#0 AGAGGACATCAAAGGAGTATGAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTAT 120
consensus_8418#1 ---------------AGTATGAAA-GCTCCAT-AACTGGTAATCGTT-GGTTCGACGTAT 42
consensus_8418#2 ------------------------------------------------------------
consensus_8418#0 TCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATT-CCCAGCGATTA 179
consensus_8418#1 -CCANATTGACCAGCATGATTT-CAATANAGTCGAT-GCCTCTTTATTTCCCAGCGATTA 99
consensus_8418#2 ----------------------------------TAAACCCTGCTGTAACCACGCAANT- 25
** * * ** ** * *
consensus_8418#0 CTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGC 239
consensus_8418#1 CTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGC 159
consensus_8418#2 TTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTAC---AAGGGCTGCCAAAGAAATTAT 82
** * ** ** * * ****** ***** * ** *
consensus_8418#0 GAACCTCGCAATGATTGATAGCTGCTG--CTATACCAAGTTTTAACGGGGATCCAGGATT 297
consensus_8418#1 GAACCTCGCAATGATTGATAGCTGCTG--CTATACCAAGTTTTAACGGGGATCCAGGATT 217
consensus_8418#2 GAAAGTAGC--TGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAA-- 138
*** * ** ** **** * ** * * ** *** ** *** ** *
consensus_8418#0 GACGAAAACAGTAATCAT-TGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTG 356
consensus_8418#1 GACGAAAACAGTAATCAT-TGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTG 276
consensus_8418#2 GGCAAGTACGAAGAATATCTGTTCTTAATATTTCATT---AGCACATTGA--AACATTTG 193
* * * ** * ** ** ** * **** *** *** * * * **
consensus_8418#0 CTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAG 416
consensus_8418#1 CTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAG 336
consensus_8418#2 CTTTATCTTTGGTAAC-TTTATAAGATCTTTGCCCATC-------CCGACAAAATGAGAT 245
** * *** * * * **** * ** **** ** * * *
consensus_8418#0 CACTGATCTCGCCA-AGACTAAACCCTGCTGTAACCACGCAATTTTTAATTA-ACT---- 470
consensus_8418#1 CACTGATCTCGCCA-AGACTAAACCCTGCTGTAACCACGCAATTTTTAATTA-ACTTAAA 394
consensus_8418#2 CCTTGTCCTGGGAATAAAATTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTTTG 305
* ** ** * * * * * * * * ** *** * * *** ***
consensus_8418#0 ---------------------------------CTTCATTTTCTTCTCGAAGCTTTACAA 497
consensus_8418#1 ACATATAGCGTGAATTATATGAGATAGAAACCTCTTCATTTTCTTCTCGAAGCTTTACAA 454
consensus_8418#2 TCATATAGAGCCCATT---------------TATATCGAGGTTTTGTTAAACATT---GT 347
** * ** * ** **
consensus_8418#0 GGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTG 557
consensus_8418#1 GGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTG 514
consensus_8418#2 GAATCCCCGGAATCACTAGAAAAATTGCACCGTCTGAATGGATTGTGTGGTAAGCACTCG 407
* ** * * ** *** * ** * **** ** ** * * * *
consensus_8418#0 AAGCAGGACCCTCAAGGCAAGTACGAGGAATATCTGTTCTTAATATTTCATTAGCACATT 617
consensus_8418#1 AAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATT 574
consensus_8418#2 TAA-ACGATCGGTTTGGTAA-TATAAAATGTA---GAATTCCGCATTTAATGAAAACGTT 462
* * ** * ** ** ** * ** * * **** ** * ** **
consensus_8418#0 GAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAG 677
consensus_8418#1 GAAACATTTGCTTTATCTTTGGTAACTTTATA---------------------------- 606
consensus_8418#2 TAAAGATTGGTGATATCTTTTTCAACAC-------------------------------- 490
*** *** * ******* ***
consensus_8418#0 ATCCTTGTCCTGGGAATAAAACTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTA 737
consensus_8418#1 ------------------------------------------------------------
consensus_8418#2 ------------------------------------------------------------
consensus_8418#0 AAAAAGTTTTTCAGTGATACTAAAAATACCTTTTGTCATATAGAGCCCATTTATATCGAG 797
consensus_8418#1 ------------------------------------------------------------
consensus_8418#2 ------------------------------------------------------------
consensus_8418#0 GTTTTGTTAAACATTGTGAATCCCCGGAA 826
consensus_8418#1 -----------------------------
consensus_8418#2 -----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||