cluster # 8422

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Schistosoma mansoni
cluster # 8422 cluster # 8422 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8422#0 length = 773 sequences # 5

consensus_8422#1 length = 295 sequences # 1

consensusID : consensus_8422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 773
fasta sequence

                              [ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAACACAATGTTTCTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGCAAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGACATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTACAAGTTTATCTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCACCA]

[+] EMBL CD091633             [ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAACACAATGTTTCTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGCAAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD093347             [                                                                                                                                                                                                                                       AAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGACATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTACAAGTTTATCTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCACCA]
[+] EMBL CD157647             [                                                                                                                                                                                                                                         GCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTNTGTCCACATCTGCATACCAAGTAGAT                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD157747             [                                                                                                                                                                                                                                           TTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTT                                                                                                                                                                                                                                                                ]
[-] EMBL CD163389             [                                                                                                                                                                                                                                                                                 ATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGACATGCA                                                                                                            ]




>consensus_8422#0
ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAACACAATGTTT
CTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGC
TATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATA
AAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGCAAGCTTCTC
CTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTG
ATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAA
TATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGT
CATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAA
TTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAA
GACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCA
GTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGAC
ATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTACAAGTTTAT
CTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCACCA

consensusID : consensus_8422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAATACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAATAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG]

[-] EMBL CD095689             [ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAATACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAATAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG]




>consensus_8422#1
ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAAT
ACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAA
TAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATC
TTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCAT
GATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8422#0      ------------------------------------------------------------
consensus_8422#1      ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAAT 60
                                                                                  

consensus_8422#0      ---------ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAAC 51
consensus_8422#1      ACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAA 120
                               ***  ** * *    *   * ***  * *  *  ***** * * *** ** 

consensus_8422#0      ACAATGTTTCTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATC 111
consensus_8422#1      TAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATC 180
                        *       *  ****** ********** *****************************

consensus_8422#0      TTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCAT 171
consensus_8422#1      TTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCAT 240
                      ************************************************************

consensus_8422#0      GATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGC 231
consensus_8422#1      GATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG----- 295
                      *******************************************************     

consensus_8422#0      AAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCA 291
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      CATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAAC 351
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      ATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGAT 411
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      AACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAG 471
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      TAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGT 531
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      GCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATG 591
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      TCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTG 651
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      TAGTATGACATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTA 711
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      CAAGTTTATCTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCAC 771
consensus_8422#1      ------------------------------------------------------------
                                                                                  

consensus_8422#0      CA 773
consensus_8422#1      --