cluster # 8426

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Schistosoma mansoni
cluster # 8426 cluster # 8426 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8426#0 length = 296 sequences # 2

consensus_8426#1 length = 279 sequences # 3
consensus_8426#2 length = 274 sequences # 1

consensusID : consensus_8426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 296
fasta sequence

                              [TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTTTCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTGTTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGGTCACGATCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCCATTACA]

[+] EMBL BG930169             [TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTTTCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTGTTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGGTCACGATCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCCATTACA]
[-] EMBL BG930587             [ TCGTGGGTAACTGAAGTGTGTCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTTTCGCTAATAGTTGGGTCCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTGTTGCCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGGCTTCTTATTAGCCTTC GCTTAAGCTGAc               ]




>consensus_8426#0
TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCC
CATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTCTGAGATAGTT
TCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAGCTGTCTGCTG
TTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGGTCACGA
TCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCCATTACA

consensusID : consensus_8426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 279
fasta sequence

                              [GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTTTCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGACTTCTTATAAGCCTGCGCTTAAGTTGA]

[+] EMBL BG930890             [GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTTTCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGACTTCTTATAAGCCTGCGCTTAAGTTGA]
[+] EMBL BG931355             [tTCGTGGGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTTTCACTGATATTCGGATTCCTTATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCGACCCGCCATCGATCACaa                                       ]
[+] EMBL BG931381             [                                                                                                                                       gTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGATCATTACGTAGGCTTCTTATAAGTCTGC           ]




>consensus_8426#1
GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCC
CATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATCTGAGATGGTT
TCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAGCTGCCTACTG
TTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCACTGTTCACGA
TCATTACGTAGACTTCTTATAAGCCTGCGCTTAAGTTGA

consensusID : consensus_8426#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTCCGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAGTTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTACTGATCAAGTAGGCTTCTTGTTAGTCAGCGGTTAAACTGAA]

[-] EMBL BG930956             [TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAAGTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTCCGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAGTTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTACTGATCAAGTAGGCTTCTTGTTAGTCAGCGGTTAAACTGAA]




>consensus_8426#2
TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAA
GTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTC
CGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAG
TTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTACTGATCA
AGTAGGCTTCTTGTTAGTCAGCGGTTAAACTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8426#0      ----------TTCGTGGGTAACTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAA 50
consensus_8426#1      ----------GTCGTGAGTAATTGAAGTGTGGCTGAAGGCCAGTTGAACTGATCCCTAAA 50
consensus_8426#2      TGGACGGGGGGTCGTGGGTAACTGAAGTGTAGCTGAAGGCCAGTTGAACTGATCCCTAAA 60
                                 ***** **** ******** *****************************

consensus_8426#0      GTGTTCTGCCCATCGATCCAATCTCCTGGATTGAGAATGAATGATATGCCCATCTTTGTC 110
consensus_8426#1      GTGTTCTGCCCATCGATCCAACCTCCTGGATTGAGAATGAATTATATGCCCATCTTTATC 110
consensus_8426#2      GTGTTCTGCCTATCGATCCAATCTCCTGGATTGAGAATGAATTATACGTCCATCTTTTTC 120
                      ********** ********** ******************** *** * ******** **

consensus_8426#0      TGAGATAGTTTCGCTAATAGTTGGGTTCCTAATGCCGGTTTCTTTAATAAGTCTGAATAG 170
consensus_8426#1      TGAGATGGTTTCACTGATATTCGGGTTCCTAATACCGGTTTCTTTAACGAGTCTGAATAG 170
consensus_8426#2      CGAGATAGTTTCGCTGAAAGTTGGGTTCCTAATACCGGTTTATTTAACAAGTCTGAACAG 180
                       ***** ***** ** * * * *********** ******* *****  ******** **

consensus_8426#0      CTGTCTGCTGTTACCTATTTCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCA 230
consensus_8426#1      CTGCCTACTGTTACCTATTGCCGCTGCCTTTTCCATCTCTCTTGCTTTCGCTACCCACCA 230
consensus_8426#2      TTGTCTGCTGTTACCTATTGCCGCTGCATTTTCCATCTCTCTTGCTTTCGCTAC------ 234
                       ** ** ************ ******* **************************      

consensus_8426#0      CTGGTCACGATCATTGCGTAAGCTTCTTAATAGCCCTCGGTTTAAGCTGATCCCCCGGCC 290
consensus_8426#1      CTGTTCACGATCATTACGTAGACTTCTTATAAGCCTGCG-CTTAAGTTGA---------- 279
consensus_8426#2      ----------TGATCAAGTAGGCTTCTTGTTAGTCAGCG-GTTAAACTGAA--------- 274
                                * **   ***  ******   ** *  **  ****  ***          

consensus_8426#0      ATTACA 296
consensus_8426#1      ------
consensus_8426#2      ------