cluster # 8431

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Schistosoma mansoni
cluster # 8431 cluster # 8431 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8431#0 length = 643 sequences # 4

consensus_8431#1 length = 541 sequences # 2

consensusID : consensus_8431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 643
fasta sequence

                              [TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAA-GGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT]

[-] EMBL CD098346             [TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCCGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD080566             [     TGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTACTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT]
[+] EMBL CD140225             [                ATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACTAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTACTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAA GGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGC                                                                                                                                                                                                                                      ]
[+] EMBL CD078507             [                 TGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAA GGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCANAAGAAGACCATGTCANATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAAC                                                                                    ]




>consensus_8431#0
TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCG
TTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGA
ATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTT
CGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACT
GACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGG
TGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGC
AGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTG
TGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGT
TGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGA
ATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTC
AGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT

consensusID : consensus_8431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence

                              [CTCGAGGCAAGAATCGGCACGAGGTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATTGGGGCAATTCAAAGACAACAAGCTGCACGTGCTGTTGAAACTGATCGTAATATTGCTGAGACTTTTGAAGATTTGAGTCAACTTATGAACAACGCAAGTGAAATG]

[+] EMBL CD083856             [CTCGAGGCAAGAATCGGCACGAGGTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATTGGGGCAATTCAAAGACAACAAGCTGCACGTGCTGTTGAAACTGATCGTAATATTGCTGAGACTTTTGAAGATTTGAGTCAACTTATGAACAACGCAAGTGAAATG]
[-] EMBL CD158372             [                                                                                                                                                                              AAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAA                                                                                                                                           ]




>consensus_8431#1
CTCGAGGCAAGAATCGGCACGAGGTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATT
GGCTGCTATAATTTCTGTGAAGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTAC
ACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTT
ACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGG
AATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGT
CAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCT
AAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAAATTGACAACTAAGTCGTT
TGGTACTGGAGGTATTGGGGCAATTCAAAGACAACAAGCTGCACGTGCTGTTGAAACTGA
TCGTAATATTGCTGAGACTTTTGAAGATTTGAGTCAACTTATGAACAACGCAAGTGAAAT
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8431#0      TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCG 60
consensus_8431#1      ------------------------------------------------------------
                                                                                  

consensus_8431#0      TTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGA 120
consensus_8431#1      ------------------------------------------------------------
                                                                                  

consensus_8431#0      ATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTT 180
consensus_8431#1      ------------------------------------------------------------
                                                                                  

consensus_8431#0      CGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACT 240
consensus_8431#1      --------------------------CTCGAGGCAAGAATCGGCACGAGG-TTTAGCACT 33
                                                ***   * *      **   **   *********

consensus_8431#0      GACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGG 300
consensus_8431#1      GACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGG 93
                      ************************************************************

consensus_8431#0      TGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGC 360
consensus_8431#1      TGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGC 153
                      ************************************************************

consensus_8431#0      AGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTG 420
consensus_8431#1      AGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTG 213
                      ************************************************************

consensus_8431#0      TGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGT 480
consensus_8431#1      TGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGT 273
                      *** ********************************************************

consensus_8431#0      TGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGA 540
consensus_8431#1      TGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGA 333
                      ************************************************************

consensus_8431#0      ATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTC 600
consensus_8431#1      ATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTC 393
                      ********************************************************* **

consensus_8431#0      AGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT----------------- 643
consensus_8431#1      AGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATTGGGGCAATTCAAAGACA 453
                      *******************************************                 

consensus_8431#0      ------------------------------------------------------------
consensus_8431#1      ACAAGCTGCACGTGCTGTTGAAACTGATCGTAATATTGCTGAGACTTTTGAAGATTTGAG 513
                                                                                  

consensus_8431#0      ----------------------------
consensus_8431#1      TCAACTTATGAACAACGCAAGTGAAATG 541