cluster # 8433

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Schistosoma mansoni
cluster # 8433 cluster # 8433 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8433#0 length = 1180 sequences # 3

consensus_8433#1 length = 948 sequences # 2
consensus_8433#2 length = 211 sequences # 1

consensusID : consensus_8433#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1180
fasta sequence

                              [GGCCCGAGGCCAGAATCGGCACGAGGGAGACTACTACAATTCAAAATAATGGTCACTCAGCTGAAGTTAAATTTCCACGAAACACTTGGTTTATATCGTTTGATGGAATACTTGATTACAAATATGAAATCATACAAATGCATTTCCACTGGGGTAATACTGATGATCGTGGATCTGAGCATACAATTGATGGATTTAGATTTCCTTTAGAAGGACATATTGTATCGTTTCGAAGACAGATGTATTCTTCACCCAGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCATGCATCAAATTGTTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTGGGTTCACTAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCCAGTGTTAATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACAAACTAGTATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACTTGCATCACGTACTCTATATCGAGCCACAGCATCAAGTCTTTCATTATTATCTTTATCAGGTATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACTCAAAAAACATTTATGCCCGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCTTCCAGTCTTTGAGTGAAAAGAAGAAAAAAAAATATTTGCCATTACTACTTTATAGAGTAAATTTTCTCTTTTTTTTATTTTCTTCTTTGTTTTGTAAATAAGTAATTGATCATTNTCCAAAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTNTCCTTTTATATTATATATTATGGGATACATANNCACATGTAGAGTNCCTTGATAAATACCTCAGTACTTNATGGNTACTTATNCTAGCTCTTCATAGNTAATTNNTACTTTCTTCTTCAGAATGGAAANTATGNNATNCATGATCATTNCATGNNATCATATCAGNGAATAGAAAAAGA]

[+] EMBL CD083307             [GGCCCGAGGCCAGAATCGGCACGAGGGAGACTACTACAATTCAAAATAATGGTCACTCAGCTGAAGTTAAATTTCCACGAAACACTTGGTTTATATCGTTTGATGGAATACTTGATTACAAATATGAAATCATACAAATGCATTTCCACTGGGGTAATACTGATGATCGTGGATCTGAGCATACAATTGATGGATTTAGATTTCCTTTAGAAGGACATATTGTATCGTTTCGAAGACAGATGTATTCTTCACCCAGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCATGCATCAAATTGTTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTGGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD120975             [                                                                                                                                                                                                 ATTTAGATTTCCTTTAGAAGGACATATTGTATCGTTTCGAAGACAGATGTATTCTTCACCCAGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCATGCATCAAATTGTTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCGAATAACTCGACAATTGATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTGGGTTCACTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD080595             [                                                                                                                                                                                                                                                                                                                                                                        TTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTGGGTTCACTAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCCAGTGTTAATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACAAACTAGTATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACTTGCATCACGTACTCTATATCGAGCCACAGCATCAAGTCTTTCATTATTATCTTTATCAGGTATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACTCAAAAAACATTTATGCCCGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCTTCCAGTCTTTGAGTGAAAAGAAGAAAAAAAAATATTTGCCATTACTACTTTATAGAGTAAATTTTCTCTTTTTTTTATTTTCTTCTTTGTTTTGTAAATAAGTAATTGATCATTNTCCAAAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTNTCCTTTTATATTATATATTATGGGATACATANNCACATGTAGAGTNCCTTGATAAATACCTCAGTACTTNATGGNTACTTATNCTAGCTCTTCATAGNTAATTNNTACTTTCTTCTTCAGAATGGAAANTATGNNATNCATGATCATTNCATGNNATCATATCAGNGAATAGAAAAAGA]




>consensus_8433#0
GGCCCGAGGCCAGAATCGGCACGAGGGAGACTACTACAATTCAAAATAATGGTCACTCAG
CTGAAGTTAAATTTCCACGAAACACTTGGTTTATATCGTTTGATGGAATACTTGATTACA
AATATGAAATCATACAAATGCATTTCCACTGGGGTAATACTGATGATCGTGGATCTGAGC
ATACAATTGATGGATTTAGATTTCCTTTAGAAGGACATATTGTATCGTTTCGAAGACAGA
TGTATTCTTCACCCAGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCA
TGCATCAAATTGTTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATT
TTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAA
ATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTGGGTTCAC
TAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCCAGTGTTAA
TTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACAAA
CTAGTATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACTTGCAT
CACGTACTCTATATCGAGCCACAGCATCAAGTCTTTCATTATTATCTTTATCAGGTATAT
TATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACTCAAAA
AACATTTATGCCCGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCTTCCAGT
CTTTGAGTGAAAAGAAGAAAAAAAAATATTTGCCATTACTACTTTATAGAGTAAATTTTC
TCTTTTTTTTATTTTCTTCTTTGTTTTGTAAATAAGTAATTGATCATTNTCCAAAATGTA
ATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTNTCCTTTTATATTATATATT
ATGGGATACATANNCACATGTAGAGTNCCTTGATAAATACCTCAGTACTTNATGGNTACT
TATNCTAGCTCTTCATAGNTAATTNNTACTTTCTTCTTCAGAATGGAAANTATGNNATNC
ATGATCATTNCATGNNATCATATCAGNGAATAGAAAAAGA

consensusID : consensus_8433#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 948
fasta sequence

                              [CTCCTAAGGWAACTTCTTCACCTGGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCATGCATCAAATTGTTGAATCAWTAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTTGGTTCACTAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCCCAGTGTTAATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACTACSAACTAGAATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACTTGCATCACGTACTCTATATCGAGCCGCAGCATCAAGTCTTTCATTATTATCTTTATCAGGTATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACTCAAAAAACATTTATGCCACGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCTTCCAGTCTTTGAGTGAAAAGAAGAAAAAAAATATTTGCCATTACTACTTTATAGAGTAAATTTTCTCTTTTTGCATATTCACTACTCTGTGTTGTAAATAAGTAATTGATCATTTTCCAAAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTTTCCTTTATTAGTATATATTATGGATTACATACAACATGTAAGAGTTCCTTGATTAATTACGCAGTACTTATTGTTTACTAATCGAGCTCTCATGAGTTATTTTTACTTTCTCCTCAGATTGGAAATATGTATTCATGGTTCATTCACTGGAACAACCACCAGTGATAGAAAAA]

[-] EMBL SM1247317            [CTCCTAAGGWAACTTCTTCACCTGGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCATGCATCAAATTGTTGAATCAWTAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTTGGTTCACTAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCCCAGTGTTAATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACTACSAACTAGAATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACTTGCATCACGTACTCTATATCGAGCCGCAGCATCAAGTCTTTCATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AI618826             [                                                                                                                                                                                                                                                                                                                                                                                    ACTAGAATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACTTGCATCACGTACTCTATATCGAGCCACAGCATCAAGTCTTTCATTATTATCTTTATCAGGTATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACTCAAAAAACATTTATGCCACGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCTTCCAGTCTTTGAGTGAAAAGAAGAAAAAAAATATTTGCCATTACTACTTTATAGAGTAAATTTTCTCTTTTTGCATATTCACTACTCTGTGTTGTAAATAAGTAATTGATCATTTTCCAAAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTTTCCTTTATTAGTATATATTATGGATTACATACAACATGTAAGAGTTCCTTGATTAATTACGCAGTACTTATTGTTTACTAATCGAGCTCTCATGAGTTATTTTTACTTTCTCCTCAGATTGGAAATATGTATTCATGGTTCATTCACTGGAACAACCACCAGTGATAGAAAAA]




>consensus_8433#1
CTCCTAAGGWAACTTCTTCACCTGGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTC
TTGGTATCATGCATCAAATTGTTGAATCAWTAAAATATGAACAAACAGCGTTCAAGGCAT
ATAACAATTTTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTG
ATGATATAAATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATT
TTGGTTCACTAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATC
CCAGTGTTAATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAAT
GAAAAACTACSAACTAGAATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATA
GATACACTTGCATCACGTACTCTATATCGAGCCGCAGCATCAAGTCTTTCATTATTATCT
TTATCAGGTATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTA
ATTGAACTCAAAAAACATTTATGCCACGGGATATTTAGCTTCTTCTTCTAGACCGAAATT
CTTACCCTTCCAGTCTTTGAGTGAAAAGAAGAAAAAAAATATTTGCCATTACTACTTTAT
AGAGTAAATTTTCTCTTTTTGCATATTCACTACTCTGTGTTGTAAATAAGTAATTGATCA
TTTTCCAAAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTTTCCTT
TATTAGTATATATTATGGATTACATACAACATGTAAGAGTTCCTTGATTAATTACGCAGT
ACTTATTGTTTACTAATCGAGCTCTCATGAGTTATTTTTACTTTCTCCTCAGATTGGAAA
TATGTATTCATGGTTCATTCACTGGAACAACCACCAGTGATAGAAAAA

consensusID : consensus_8433#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [ACGAGCGGCACTAGTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTTCTGAATTCGCAATTCGTTCCTCCAAATAATTCGACAATTGATGATTTAAATTTAGCGCTACTTCTAAGCTTGATGAATCCTAATCGTTATTTTCACTATTTTGGTTCACATAACAACTTCACCATGCACAGAAAATGTT]

[+] EMBL AI976742             [ACGAGCGGCACTAGTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATTTTTCTGGTGTTCTGAATTCGCAATTCGTTCCTCCAAATAATTCGACAATTGATGATTTAAATTTAGCGCTACTTCTAAGCTTGATGAATCCTAATCGTTATTTTCACTATTTTGGTTCACATAACAACTTCACCATGCACAGAAAATGTT]




>consensus_8433#2
ACGAGCGGCACTAGTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAAT
TTTTCTGGTGTTCTGAATTCGCAATTCGTTCCTCCAAATAATTCGACAATTGATGATTTA
AATTTAGCGCTACTTCTAAGCTTGATGAATCCTAATCGTTATTTTCACTATTTTGGTTCA
CATAACAACTTCACCATGCACAGAAAATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8433#0      GGCCCGAGGCCAGAATCGGCACGAGGGAGACTACTACAATTCAAAATAATGGTCACTCAG 60
consensus_8433#1      ------------------------------------------------------------
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      CTGAAGTTAAATTTCCACGAAACACTTGGTTTATATCGTTTGATGGAATACTTGATTACA 120
consensus_8433#1      ------------------------------------------------------------
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      AATATGAAATCATACAAATGCATTTCCACTGGGGTAATACTGATGATCGTGGATCTGAGC 180
consensus_8433#1      ------------------------------------------------------------
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      ATACAATTGATGGATTTAGATTTCCTTTAGAAGGACATATTGTATCGTTTCGAAGACAGA 240
consensus_8433#1      -----------------------------------------------CTCCTAAGGWAA- 12
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      TGTATTCTTCACCCAGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCA 300
consensus_8433#1      ---CTTCTTCACCTGGTGAAGCTATTGGTCGACCAGGTGGACTTGCTGTTCTTGGTATCA 69
consensus_8433#2      -----------------------------------------------------------A 1
                                                                                 *

consensus_8433#0      TGCATCAAATTGTTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATT 360
consensus_8433#1      TGCATCAAATTGTTGAATCAWTAAAATATGAACAAACAGCGTTCAAGGCATATAACAATT 129
consensus_8433#2      CGAGCGGCACTAGTGAATCAATAAAATATGAACAAACAGCGTTCAAGGCATATAACAATT 61
                       *      * *  ******* ***************************************

consensus_8433#0      TTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAA 420
consensus_8433#1      TTTCTGGTGTACTGAATTCGCAATTCGTCCCTCCAAATAATTCGACAATTGATGATATAA 189
consensus_8433#2      TTTCTGGTGTTCTGAATTCGCAATTCGTTCCTCCAAATAATTCGACAATTGATGATTTAA 121
                      ********** ***************** *************************** ***

consensus_8433#0      ATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTGGGTTCAC 480
consensus_8433#1      ATTTAGCGCTACTTCTAAGCTTGTTGAATCCTAGTCGTTATTTTCGCTATTTTGGTTCAC 249
consensus_8433#2      ATTTAGCGCTACTTCTAAGCTTGATGAATCCTAATCGTTATTTTCACTATTTTGGTTCAC 181
                      *********************** ********* *********** ****** *******

consensus_8433#0      -TAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCC-AGTGTT 538
consensus_8433#1      -TAACAACTCCACCATGCACAGAAAATGTTCTTTGGACTGTTTTTATAGATCCCAGTGTT 308
consensus_8433#2      ATAACAACTTCACCATGCACAGAAAATGTT------------------------------ 211
                       ******** ********************                              

consensus_8433#0      AATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACA 598
consensus_8433#1      AATTACACGTGAACAGATTAATTTATTTCGTAATTTACCTTATGGTTCCAATGAAAAACT 368
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      A---ACTAGTATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACT 655
consensus_8433#1      ACSAACTAGAATGGGTGATAATTTTCGTCCTATTCAACTATTAAATCCAATAGATACACT 428
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      TGCATCACGTACTCTATATCGAGCCACAGCATCAAGTCTTTCATTATTATCTTTATCAGG 715
consensus_8433#1      TGCATCACGTACTCTATATCGAGCCGCAGCATCAAGTCTTTCATTATTATCTTTATCAGG 488
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      TATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACT 775
consensus_8433#1      TATATTATATATCATGATAACCAGTCAACTTAGTGTGATATTTTTATAATTAATTGAACT 548
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      CAAAAAACATTTATGCC-CGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCT 834
consensus_8433#1      CAAAAAACATTTATGCCACGGGATATTTAGCTTCTTCTTCTAGACCGAAATTCTTACCCT 608
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      TCCAGTCTTTGAGTGAAAAGAAGAAAAAAAAATATTTGCCATTACTACTTTATAGAGTAA 894
consensus_8433#1      TCCAGTCTTTGAGTGAAAAGAAGAAAAAAAA-TATTTGCCATTACTACTTTATAGAGTAA 667
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      ATTTTCTCTTTTTTT-TATTTTCTTCTTTGTTTTGTAAATAAGTAATTGATCATTNTCCA 953
consensus_8433#1      ATTTTCTCTTTTTGCATATTCACTACTCTGTGTTGTAAATAAGTAATTGATCATTTTCCA 727
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      AAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTNTCCTTTTATATT 1013
consensus_8433#1      AAATGTAATTGAACATTCTGATGTGCTTGATTTCACATCGAAATGTTTTCCTTTATTAGT 787
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      ATATATTATGGGATACATANNCACATGTA-GAGTNCCTTGATAAATACCTCAGTACTTNA 1072
consensus_8433#1      ATATATTATGGATTACATACA-ACATGTAAGAGTTCCTTGATTAATTACGCAGTACTTAT 846
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      TGGNTACTTATNCTAGCTCTTCATAGNTAATTNNTACTTTCTTCTTCAGAATGGAAANTA 1132
consensus_8433#1      TGTTTACTAATCG-AGCTCT-CATGAGTTATTTTTACTTTCT-CCTCAGATTGGAAAT-A 902
consensus_8433#2      ------------------------------------------------------------
                                                                                  

consensus_8433#0      TGNNATNCATGATCATTNCATGNNATCATATCAGNGAATAGAAAAAGA 1180
consensus_8433#1      TGTATTCATGGTTCATTCACTGGAACAACCACCAGTGATAGAAAAA-- 948
consensus_8433#2      ------------------------------------------------