These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1308 fasta sequence [CTCAGTCCTTCATCATACCGTGCGAGGATACGATTGTAACGACGTTTCTTTGAGTCATCGTTGGTTATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGTGCAAACAATAGACGTTTTCATAATATCTGGTACAGTCGATTTTACAGGCTGAGAAATCACATTTTTATTGTTTAGATCCCCTTCATTAGAGAATTCATACTTCGATGGCGGCGGAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTTCTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCACGAGCTTGCAAAGCAGCTAATTTGTATTCTTTATGACGGTTTTTCAATAAATCTAAACCAGAATTAGAAGTCTTTGGATTGATATAATCCAATACAGCTTGACGAATATCAGGTTTTGCATCAGAGGCAGTCAGTTTTAAAGTACTTCCTGAACTATTTCCCAAAGCATTATTGTTTGAAGATGCCTTTGGATTTGTCATCGAACCACTGTTGGATGTACTACTAGTATTCATCTTATGATCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGATACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCTTCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCCATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCAGCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTGATCAAAAGACGAAGGTTCATTGGGAATCTCAAGGCTTGAATCATCATGCAATAAGTCAAGTAATTCCTGTTCAAGATCTTCACTACTGAAGTCGACATCGTCGATATTGTCAGGATTGAAAGTAGTGTCCTTTGACTGAAGTTTCTTAGATGTCCACTGCCTTACGAAATACGGATTCGAATAATCTTCTGCCACTTATAAGCAATCTCAAAGTCTTTTATTGATGTACAAAATATGGAAGTAGCACAGTTTCAGTTCAAAGTAATGATCTGCATAACANATAGGAAAGAAGCTTTAAAAATTTCTTTTCAAT] [+] EMBL CD149919 [CTCAGTCCTTCATCATACCGTGCGAGGATACGATTGTAACGACGTTTCTTTGAGTCATCGTTGGTTATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGTGCAAACAATAGACGTTTTCATAATATCTGGTACAGTCGATTTTACAGGCTGAGAAATCACATTTTTATTGTTTAGATCCCCTTCATTAGAGAATTCATACTTCGATGGCGGCGGAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTTCTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGT ] [+] EMBL CD197679 [ ATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGTGCAAACAATAGACGTTTTCATAATATCTGGTACAGTCGATTTTACAGGCTGAGAAATCACATTTTTATTGTTTAGATCCCCTTCATTAGAGAATTCATACTTCGATGGCGGCGGAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTTCTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCACGAGCTTGCAAAGCAGCTAATTTGTATTCTTTATGACGGTTTTTCAATAAATCTAAACCAGAATTAGAAGTCTTTGGATTGATATAATCCAATACAGCT ] [-] EMBL CD153880 [ TGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCACGAGCTGNCAAAGCAGCTAATTTGTATTCTTTATGACGGTTNTTCAATAAATCTAAACCAGAATTAGAAGTCTTTGGATTGATATAATCCAATACAGCTTGACGAATATCAGGTTTTGCATCAGAGGCAGTCAGTTTTAAAGTACTTCCTGAACTATTTCCCAAAGCATTATTGTTTGAAGATGCCTTTGGATTTGTCATCGAACCACTGTTGGATGTACTACTAGTATTCATCTTATGATCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGATACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCTTCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACT ] [-] EMBL CD153282 [ TAGTATTCATCTTATGATCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGATACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCTTCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCCATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCAGCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTG ] [+] EMBL CD151662 [ TCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTCATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAAGTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCCATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCAGCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTGATCAAAAGACGAAGGTTCATTGGGAATCTCAAGGCTTGAATCATCATGCAATAAGTCAAGTAATTCCTGTTCAAGATCTTCACTACTGAAGTCGACATCGTCGATATTGTCAGGATTGAAAGTAGTGTCCTTTGACTGAAGTTTCTTAGATGTCCACTGCCTTACGAAATACGGATTCGAATAATCTTCTGCCACTTATAAGCAATCTCAAAGTCTTTTATTGATGTACAAAATATGGAAGTAGCACAGTTTCAGTTCAAAGTAATGATCTGCATAACANATAGGAAAGAAGCTTTAAAAATTTCTTTTCAAT] consensusID : consensus_8436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [TACTCGTGCACAAGACGAATGGAATGAAGATGATGGACATGAGGCTATCAGACGCCGGCGTCTTGAAGCAAATGCCGAAGAGGAAGATATTACTTGTGGTGATAATAATCGTCGTAAAAATGGAACTGATCTCGATGAATTAGTTGATTTAGATTTAGACGACGAATATGATGCTGAAGCAGCTGAACTACATGAAATTGGACAAGATCGTGATAAAGATGATGGCGATGATGAACAACAAGATGATAATGGTAATAAATGGCCTTGGAACGAATTATCTCCATCAAGTAAATTGAAGATGCTTCTTGGCAATCCTTTAAGATCTGAACATAAAACAACTACTTCAAAAGATACAAATTCCGATGAATTTATCCAATGGACTGGTGACCCTGAATTAAATCAATCAGATGTAGATGATGAACGGGAATTAATCCAAGAAAATATAGAAGCTGGCAAAGAAACATTCGATCCAGAAACAGACTTACCTCCGNCGCCATCGAA] [+] EMBL CD148666 [TACTCGTGCACAAGACGAATGGAATGAAGATGATGGACATGAGGCTATCAGACGCCGGCGTCTTGAAGCAAATGCCGAAGAGGAAGATATTACTTGTGGTGATAATAATCGTCGTAAAAATGGAACTGATCTCGATGAATTAGTTGATTTAGATTTAGACGACGAATATGATGCTGAAGCAGCTGAACTACATGAAATTGGACAAGATCGTGATAAAGATGATGGCGATGATGAACAACAAGATGATAATGGTAATAAATGGCCTTGGAACGAATTATCTCCATCAAGTAAATTGAAGATGCTTCTTGGCAATCCTTTAAGATCTGAACATAAAACAACTACTTCAAAAGATACAAATTCCGATGAATTTATCCAATGGACTGGTGACCCTGAATTAAATCAATCAGATGTAGATGATGAACGGGAATTAATCCAAGAAAATATAGAAGCTGGCAAAGAAACATTCGATCCAGAAACAGACTTACCTCCGNCGCCATCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8436#0 CTCAGTCCTTCATCATAC-CGTGCGAGGATACGATTGTAACGACGTTTCTTTGAGTCATC 59 consensus_8436#1 ---------------TACTCGTGC-ACAAGACGAATGGAATGAAGATGAT---GGACATG 41 *** ***** * * **** ** ** ** * * * * *** consensus_8436#0 GTTGGTTATTTCCTTTAATTTTTCTTTATAGTAGGCTATACGGGCTAAGATATTTTCTGT 119 consensus_8436#1 A--GGCTATCAGACGCCGGCGT--CTTGAAGCAAATGCCGAAGAGGAAGATATTACTTGT 97 ** *** * ** ** * * ******** *** consensus_8436#0 GCAAACAATAGACGTTTTCATAAT--ATCTGGTACAGTCGATTTTACAGGCTGAGA---- 173 consensus_8436#1 GGTGATAATAATCGTCGTAAAAATGGAACTGATCTCGATGAATTAGTTGATTTAGATTTA 157 * * **** *** * * *** * *** * * ** ** * * *** consensus_8436#0 AATCACATTTTTATTGTTTAGATCCCCTTCATTAGA-GAATTCATACTTCGATGGCGGCG 232 consensus_8436#1 GACGACGAATATGATGCTGAAG-CAGCTGAACTACATGAAATTGGACAA-GATCGTGATA 215 * ** * * ** * * * ** * ** * *** * ** *** * * consensus_8436#0 GAGGTAAGTCTGTTTCTGGATCGAATGTTTCTTTGCCAGCTTCTATATTCACGATAGCTT 292 consensus_8436#1 AAGATGATGGCGATGATGAACAACAAGA-----TGATAATGGTAATA-----AATGGC-- 263 ** * * * * ** * * * ** * *** ** ** consensus_8436#0 CTCCGATACACTTTGATGCTTCTAATAATTCTCTTGCTTTCCCTAGTTGGCCTGTATCAC 352 consensus_8436#1 CTTGGAACGAATTATCTCCATCAAGTAAATTGAAGATGCTTCTTGGCAATCCTTTAAGAT 323 ** ** * ** * * ** * *** * * * * * *** ** * consensus_8436#0 GAGCTTGCAAAGCAGCTAATTTGTATTCTTTATGACGGTTTTTCAATAAATCTAAACCAG 412 consensus_8436#1 CTGAACATAAAACAACTACTTCAAAAGATACAAA------TTCCGATGAATTTATCCAAT 377 * *** ** *** ** * * * ** * ** *** ** * * consensus_8436#0 AATTAGAAGTCTTTGGATTGATATAATCCAATACAGCTTGACGAATATCAGGTTTTGCAT 472 consensus_8436#1 GGACTGGTGACCCTGAATTAAATCAATCAGATGTAGAT-GATGAACGGGAATTAATCCAA 436 * * * ** *** * **** ** ** * ** *** * * * ** consensus_8436#0 CAGAG-GCAGTCAGTTTTAAAGTACTTCCTGAACTATTTCCCAAAGCATTATTGTTTGAA 531 consensus_8436#1 GAAAATATAGAAGCTGGCAAAGAAACATTCGA------TCCAGAAACAGACTTACCTCC- 489 * * ** * **** * ** *** ** ** ** * consensus_8436#0 GATGCCTTTGGATTTGTCATCGAACCACTGTTGGATGTACTACTAGTATTCATCTTATGA 591 consensus_8436#1 GNCGCCATCGAA------------------------------------------------ 501 * *** * * * consensus_8436#0 TCACCAAAAATATCTCCTTCGTTGATCTCTAATTCATCCATCTTATTAGCTCTATTCGAT 651 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 ACAGGTGATTTCCCACTTTCCATTGATTTTACTAGTTCAGCAAGTACCAATTCTTCGTCT 711 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 TCATCACAATTTGTTTCATCCTTTGAATTCGTCGTCAGACCACTGTTTCTTGAAGGATTC 771 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 ATCAACGACGATCCAAAATTACTTTCTTCGAACCCCGGTGTTTGATGAGGCAACTTGGAA 831 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 GTACTACCAGTACTTGTATTATGATTGCCAAAAATATCTCCGTTGATGTTTAGCTCATCC 891 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 ATCTTATTAGCTCTGTTCGATACAGGTGATTTTCCGCTTTCCATTGATTCTACTAGTTCA 951 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 GCAAGTAACAATTCGTCATCTTTATCACAGTTTTTTTCATTCTGATCAAAAGACGAAGGT 1011 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 TCATTGGGAATCTCAAGGCTTGAATCATCATGCAATAAGTCAAGTAATTCCTGTTCAAGA 1071 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 TCTTCACTACTGAAGTCGACATCGTCGATATTGTCAGGATTGAAAGTAGTGTCCTTTGAC 1131 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 TGAAGTTTCTTAGATGTCCACTGCCTTACGAAATACGGATTCGAATAATCTTCTGCCACT 1191 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 TATAAGCAATCTCAAAGTCTTTTATTGATGTACAAAATATGGAAGTAGCACAGTTTCAGT 1251 consensus_8436#1 ------------------------------------------------------------ consensus_8436#0 TCAAAGTAATGATCTGCATAACANATAGGAAAGAAGCTTTAAAAATTTCTTTTCAAT 1308 consensus_8436#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||