cluster # 8437

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Schistosoma mansoni
cluster # 8437 cluster # 8437 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8437#0 length = 778 sequences # 5

consensus_8437#1 length = 548 sequences # 1

consensusID : consensus_8437#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 778
fasta sequence

                              [ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCAAAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGCAAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATATTATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTAC]

[-] EMBL CD194391             [ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCAAAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGCAAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATATTATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD144762             [                                                                                                                                                                                                                     TTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTA ]
[+] EMBL CD144798             [                                                                                                                                                                                                                     TTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTA ]
[-] EMBL CD147994             [                                                                                                                                                                                                                                                    ATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAACTTCAAAAAGTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTC                                                                                                                                                                                                                                  ]
[-] EMBL CD071842             [                                                                                                                                                                                                                                                                                                                                                                                                     TCAACCACATGTAAAAAATTCAAAAAGTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGTTAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGGCTAACTTAC]




>consensus_8437#0
ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCA
AAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGC
AAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATAT
TATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTG
GTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATC
CAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAA
GAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTC
ATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTT
ATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAG
CAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAA
TTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAA
TCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTT
CTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTAC

consensusID : consensus_8437#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [ACCTTCAGATGGATTCAGTAAGAAGCCATCAAGAAATAGAAAAACCAAAAAAGGCAAAACGCAATCAGATGATAATCATTCTTCAAAGTCTACACCTGCCATATCACCTAATTCTTTGATACCGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAACATTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACAATTTGTAAAGTTTCTCATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATCTTCCTTGAAGGTAAAGAATAAAAAACATCATTTGAAAAGTAACAAATTAAAGAATAGTGAAACAAACATTCTGAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCACAAACAGTTACTGAAGAAGAAGCACAAGAAAATACTAGAAAACGACGTTTTCCTAAGTCTTTCTTGACGCAAGTGGATCCGAGATATAATCGGTCTGTTCGTTTAGCTGCTAAACGAAGAANAACGGATTNCACTC]

[+] EMBL CD185452             [ACCTTCAGATGGATTCAGTAAGAAGCCATCAAGAAATAGAAAAACCAAAAAAGGCAAAACGCAATCAGATGATAATCATTCTTCAAAGTCTACACCTGCCATATCACCTAATTCTTTGATACCGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAACATTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACAATTTGTAAAGTTTCTCATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATCTTCCTTGAAGGTAAAGAATAAAAAACATCATTTGAAAAGTAACAAATTAAAGAATAGTGAAACAAACATTCTGAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCACAAACAGTTACTGAAGAAGAAGCACAAGAAAATACTAGAAAACGACGTTTTCCTAAGTCTTTCTTGACGCAAGTGGATCCGAGATATAATCGGTCTGTTCGTTTAGCTGCTAAACGAAGAANAACGGATTNCACTC]




>consensus_8437#1
ACCTTCAGATGGATTCAGTAAGAAGCCATCAAGAAATAGAAAAACCAAAAAAGGCAAAAC
GCAATCAGATGATAATCATTCTTCAAAGTCTACACCTGCCATATCACCTAATTCTTTGAT
ACCGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAA
CATTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACAATTTGTAA
AGTTTCTCATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATCTTCCTTGAAGGT
AAAGAATAAAAAACATCATTTGAAAAGTAACAAATTAAAGAATAGTGAAACAAACATTCT
GAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCACAAACAGT
TACTGAAGAAGAAGCACAAGAAAATACTAGAAAACGACGTTTTCCTAAGTCTTTCTTGAC
GCAAGTGGATCCGAGATATAATCGGTCTGTTCGTTTAGCTGCTAAACGAAGAANAACGGA
TTNCACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8437#0      ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCA 60
consensus_8437#1      -----------------------------------------------------ACCTTCA 7
                                                                           *    **

consensus_8437#0      AAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGC 120
consensus_8437#1      GATGGATTCAGTAAGAAGCCATCAA-GAAATAGAAAAACCAAAAAAGGCAAAACGCAATC 66
                       *         * *  * * * * *  *** * * * * ***   *   ****   ** *

consensus_8437#0      AAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATAT 180
consensus_8437#1      AGATGATAATCATTCTTCA---AAGTCTACACCTGCCATATCACCTAATTCTT-TGATAC 122
                      * ** ****  *     **   *** * *    *   * *  *     ** ** * *** 

consensus_8437#0      TATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTG 240
consensus_8437#1      CGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAACA 182
                         * * ** *  **** **  *  *  *    *****    **    * *    **   

consensus_8437#0      GTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATC 300
consensus_8437#1      --TTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACA-ATTTGTA 239
                         *  ** *  * *      ** **  **** *      *    **   *  ***  * 

consensus_8437#0      CAGATTATGTAATTGCTACTAAAACAAAAATTGATTTA-AGTAGTTTATCACTTCCTGAA 359
consensus_8437#1      AAGTTTCT-CATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATC-TTCCTTGAA 297
                       ** ** *  *      **** *  *   * * * * * ** ***  ***  * * ****

consensus_8437#0      AGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCT 419
consensus_8437#1      GGTAA--AGAATAAAAAACATCATTTGAAAAGTAACAAAT-TAAAGAATAGTGAAACAAA 354
                       * *   * *  ****** **  *   ***   * ** ** **** ***    ****   

consensus_8437#0      CATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACT 479
consensus_8437#1      CATT--CTGAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCA 412
                      ***   *  ****   * *  ****   *  *  ***   *  * *  *  ****** * 

consensus_8437#0      TATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAA 539
consensus_8437#1      ---CAAACAGTTACTGAAGAAGAAGCACAAGAAAAT-AC-TAGAAAACGACGTTTTCCTA 467
                         *** **  ** **** *  **    *  *** * ** **** ** ** **      *

consensus_8437#0      GCAATTAAATGTCATA-GTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTC 598
consensus_8437#1      AGTCTTTCTTGACGCAAGTGGATCCGAGATA-TAATCGGTCTGTTCGTTTAGCTGCT--- 523
                          **   ** *  * ***  *** ** ** **** **    **    *   *  *   

consensus_8437#0      AATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTC 658
consensus_8437#1      AAACGAAGAANAACGGATTNCACTC----------------------------------- 548
                      **  *   ** *    *   ***                                     

consensus_8437#0      AATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCT 718
consensus_8437#1      ------------------------------------------------------------
                                                                                  

consensus_8437#0      TTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTAC 778
consensus_8437#1      ------------------------------------------------------------