|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence
[TGGGATATTTTGAAAAATATAAATTACGTACAAACGTTTACCGATCTAAAACGGACATACGATCACAGTCATCGTTCAGTTAGGCCTGTTGTTGGAACTGTGACCCAGCAAGCGACATTAGATGTGCTTTCTTTGACTTCTACGCGTTTCCAACGTGATGCACGTGCACTAGAGATGGAAGAAGAACAATGGTTTGATCAGGATGAAGATGAGGAAGAGGAAGAAGATGGAGATAATCTATTCCCACAACACTCGCCAACATTGCTCAATAGGACGACAAATGCTTCTGCTAGTGCAAGTGAGCCTACTGTTGGAAGTGGTTTGTCAAATCTCCCTTCATATGGACTACCTTCTGTAATCACTACTTCGTCAGATTTACTGGGTATTGTTACGTCTTCAGATACGCAGTCTAGTTTTGTTTCTTTGTCATCCTCGGTCGCACCAAGCAATTCTAGTCTTGATTCATGTGCTACTGTTCTGCCTCATCCATCCAATTTCTCACCCAAATCTGTAATGGATAATTTAACTGACAATTTATGCATACCTTCACGTTCAGGATCTCTGTGTGATAGACTTCGTTTACGTCCTCACACTGTTCTTTTGAATGATGANTATGAGTCTTCTACAGCGCGTCTTAAATTTGGTCGTCAAACTCCAATAGCAATTCATATTA]
[+] EMBL CD156130 [TGGGATATTTTGAAAAATATAAATTACGTACAAACGTTTACCGATCTAAAACGGACATACGATCACAGTCATCGTTCAGTTAGGCCTGTTGTTGGAACTGTGACCCAGCAAGCGACATTAGATGTGCTTTCTTTGACTTCTACGCGTTTCCAACGTGATGCACGTGCACTAGAGATGGAAGAAGAACAATGGTTTGATCAGGATGAAGATGAGGAAGAGGAAGAAGATGGAGATAATCTATTCCCACAACACTCGCCAACATTGCTCAATAGGACGACAAATGCTTCTGCTAGTGCAAGTGAGCCTACTGTTGGAAGTGGTTTGTCAAATCTCCCTTCATATGGACTACCTTCTGTAATCACTACTTCGTCAGATTTACTGGGTATTGTTACGTCTTCAGATACGCAGTCTAGTTTTGTTTCTTTGTCATCCTCGGTCGCACCAAGCAATTCTAGTCTTGATTCATGTGCTACTGTTCTGCCTCATCCATCCAATTTCTCACCCAAATCTGTAATGGATAATTTAACTGACAATTTATGCATACCTTCACGTTCAGGATCTCTGTGTGAT ]
[+] EMBL CD156133 [ CGATCTAAAACGGACATACGATCACAGTCATCGTTCAGTTAGGCCTGTTGTTGGAACTGTGACCCAGCAAGCGACATTAGATGTGCTTTCTTTGACTTCTACGCGTTTCCAACGTGATGCACGTGCACTAGAGATGGAAGAAGAACAATGGTTTGATCAGGATGAAGATGAGGAAGAGGAAGAAGATGGAGATAATCTATTCCCACAACACTCGCCAACATTGCTCAATAGGACGACAAATGCTTCTGCTAGTGCAAGTGAGCCTACTGTTGGAAGTGGTTTGTCAAATCTCCCTTCATATGGACTACCTTCTGTAATCACTACTTCGTCAGATTTACTGGGTATTGTTACGTCTTCAGATACGCAGTCTAGTTTTGTTTCTTTGTCATCCTCGGTCGCACCAAGCAATTCTAGTCTTGATTCATGTGCTACTGTTCTGCCTCATCCATCCAATTTCTCACCCAAATCTGTAATGGATAATTTAACTGACAATTTATGCATACCTTCACGTTCAGGATCTCTGTGTGATAGACTTCGTTTACGTCCTCACACTGTTCTTTTGAATGATGANTATGAGTCTTCTACAGCGCGTCTTAAATTTGGTCGTCAAACTCCA ]
[-] EMBL CD156361 [ GTAATCACTACTTCGTCAGATTTACTGGGTATTGTTACGTCTTCAGATACGCAGTCTAGTTTTGTTTCTTTGTCATCCTCGGTCGCACCAAGCAATTCTAGTCTTGATTCATGTGCTACTGTTCTGCCTCATCCATCCAATTTCTCACCCAAATCTGTAATGGATAATTTAACTGACAATTTATGCATACCTTCACGTTCAGGATCTCTGTGTGATAGACTTCGTTTACGTCCTCACACTGTTCTTTTGAATGATGATAATGAGTCTTCTACAGCGCGTCTTAATTTTGGTCGTCAAACTCCAATAGCAATTCATATTA]
consensusID : consensus_8440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[CTGAAGTACTGCTCGCAATTGATGACCAAGATATAAAGTCAGCAGCTCTCGAAATCCTCCAGGCATTTATTGAGCACCAGCCTTCTGTTGTACGTGAATATGTCTTCAGAGAAACTGCTCCATTCCGAAAAGATGATGAATTACTCATTAATCTTATGATAAGTCAATTACTCACTGATCCAGATCCAGAACTTAGTGATGCTTTCCTTTTGGGTTACATGTTGCGCATTCTTATCGATCCAGACAATATGAACAATTCCGGTGTACGTAGCGAAAAAACAGATTTTCTCAGTTTTTTCTATAAACGATGCATCAATACACTTGTTCGTCCATTATTTGATAATACGTCAAAAGATACACTAGAGAAAGATGATTATCACACTGCATTGGTTTTAAACCATATAATTGAATTGCTCACATTCTGTATTGAAACTCATACATACCATATGAAGAATTACTGTTTTAATCGTGATCTTCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGGTAGGTTAACTCATACTCAGCATTAATCTAATGGTTATTTTTAGCTGCTTTACG]
[+] EMBL CD179075 [CTGAAGTACTGCTCGCAATTGATGACCAAGATATAAAGTCAGCAGCTCTCGAAATCCTCCAGGCATTTATTGAGCACCAGCCTTCTGTTGTACGTGAATATGTCTTCAGAGAAACTGCTCCATTCCGAAAAGATGATGAATTACTCATTAATCTTATGATAAGTCAATTACTCACTGATCCAGATCCAGAACTTAGTGATGCTTTCCTTTTGGGTTACATGTTGCGCATTCTTATCGATCCAGACAATATGAACAATTCCGGTGTACGTAGCGAAAAAACAGATTTTCTCAGTTTTTTCTATAAACGATGCATCAATACACTTGTTCGTCCATTATTTGATAATACGTCAAAAGATACACTAGAGAAAGATGATTATCACACTGCATTGGTTTTAAACCATATAATTGAATTGCTCACATTCTGTATTGAAACTCATACATACCATATGAAGAATTACTGTTTTAATCGTGATCTTCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGGTAGGTTAACTCATACTCAGCATTAATCTAATGGTTATTTTTAGCTGCTTTACG]
consensusID : consensus_8440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence
[GAACAATTCCGGTGTACGTAGCGAAAAAACAGATTTTCTCAGTTTTTTCTATAAACGGTGCATCAATACACTTGTTCGTCCATTATTTGATAATACGTCAAAAGATACACTAGAGAAAGATGATTATCACACTGCATTGGTTTTAAACCATATAATTGAATTGCTCACATTCTGTATTGAAACTCATACATACCATATGAAGAATTACTGTTTTAATCGTGATCTTCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGCTGCTTTACGCCTTCTAAGACGTGTTGTCCATATGAAAGAAGAATTTTATAATCGTTATTTGATCAAAAACAATCTTTTTAAACCAGTTTTGAAGCTTTTCGTTTCCAACGGATATCGTTACAACCTGTTGGACTCAGCCATTATCGAACTTTTTGACTATATTCGCACTGAAGAAATAACTTCCTTAATTACCCATATAATAGAAAATTATTGGGATATTNTGAAAAATATAAATTACGTACAAACGT]
[-] EMBL CD154866 [GAACAATTCCGGTGTACGTAGCGAAAAAACAGATTTTCTCAGTTTTTTCTATAAACGGTGCATCAATACACTTGTTCGTCCATTATTTGATAATACGTCAAAAGATACACTAGAGAAAGATGATTATCACACTGCATTGGTTTTAAACCATATAATTGAATTGCTCACATTCTGTATTGAAACTCATACATACCATATGAAGAATTACTGTTTTAATCGTGATCTTCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGCTGCTTTACGCCTTCTAAGACGTGTTGTCCATATGAAAGAAGAATTTTATAATCGTTATTTGATCAAAAACAATCTTTTTAAACCAGTTTTGAAGCTTTTCGTTTCCAACGGATATCGTTACAACCTGTTGGACTCAGCCATTATCGAACTTTTTG ]
[+] EMBL CD090445 [ CGTCCATTATTTGATAGTACGTCAAGAGATACACTAGAGAAAGATGATTATCACACTGCATTGGTTTTAAACCATATAATTGAATTGCTCACATTCTGTATTGAAACTCATACATACCATATGAAGAATTACTGTTTTAATCGTGATCTTCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGCTGCTTTACGCCTTCTAAGACGTGTTGTCCATATGAAAGAAGAATTTTATAATCGTTATTTGATCAAAAACAATCTTTTTAAACCAGTTTTGAAGCTTTTCGTTTCCAACGGATATCGTTACAACCTGTTGGACTCAGCCATTATCGAACTTTTTGACTATATTCGCACTGAAGAAATAACTTCCTTAATTACCCATATAATAGAAAATTATTGGGATATTNTGAAAAATATAAATTACGTACAAACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8440#1 CTGAAGTACTGCTCGCAATTGATGACCAAGATATAAAGTCAGCAGCTCTCGAAATCCTCC 60
consensus_8440#2 ------------------------------------------------------------
consensus_8440#0 ------------------------------------------------------------
consensus_8440#1 AGGCATTTATTGAGCACCAGCCTTCTGTTGTACGTGAATATGTCTTCAGAGAAACTGCTC 120
consensus_8440#2 ------------------------------------------------------------
consensus_8440#0 ------TGGGATATTTTGAAAAATATAAATTACGTACAAACGTTTACCGATCTAAAACGG 54
consensus_8440#1 CATTCCGAAAAGATGATGAATTACTCATTAATCTTATGATAAGTCAATTACTCACTGATC 180
consensus_8440#2 ------------------------------------------------------------
consensus_8440#0 ACATACGATCACA-GTCATCGTTCAGTTAGGCCTGTTGTTGGAACTGTGACCCAGCAAGC 113
consensus_8440#1 CAGATCCAGAACTTAGTGATGCTTTCCTTTTGGGTTACATGTTGCGCATTCTTATCGATC 240
consensus_8440#2 ------------------------------------------------------------
consensus_8440#0 GACATTAGATGTGCTTTCTTTGACTTCTACGCGTTTCCAACGTGATGCACGTGCACTAGA 173
consensus_8440#1 CAGACAATATGAACAATTCCGGTGTACGTAGCGAAAAAACAGATTTTCTCAGTTTTTTCT 300
consensus_8440#2 ----------GAACAATTCCGGTGTACGTAGCGAAAAAACAGATTTTCTCAGTTTTTTCT 50
consensus_8440#0 GATGGAAGAAGAACAATGGTT-TGATCAGGATGAAGATGAGGAAGAGGAAGAAGATGGAG 232
******* ** * *** * ** *
consensus_8440#1 ATAAACGATGCATCAATACACTTGTTCGTCCATTATTTGATAATACGTCAAAAGATAC-A 359
consensus_8440#2 ATAAACGGTGCATCAATACACTTGTTCGTCCATTATTTGATAATACGTCAAAAGATAC-A 109
consensus_8440#0 ATAATCTATTC-CCACAACACTCGCCAA--CATTGCTCAATAGGACGACAAATGCTTCTG 289
**** * * * ** ***** * **** * *** *** **** * * *
consensus_8440#1 CTAGAGAAAGATGATTATCACACTGCATTGGTTT-TAAACCATATAATTGAATTGCTCAC 418
consensus_8440#2 CTAGAGAAAGATGATTATCACACTGCATTGGTTT-TAAACCATATAATTGAATTGCTCAC 168
consensus_8440#0 CTAGTGCAAGTGAGCCTACTGTTGGAAGTGGTTTGTCAAATCTCCCTTCATATGGACTAC 349
**** * *** * * * ****** * ** * * ** * **
consensus_8440#1 ATTCTGTATTGA--AACTCAT-ACATACCATATGAAGAATTACTGTTTTAATCGTGATCT 475
consensus_8440#2 ATTCTGTATTGA--AACTCAT-ACATACCATATGAAGAATTACTGTTTTAATCGTGATCT 225
consensus_8440#0 CTTCTGTAATCACTACTTCGTCAGATTTACTGGGTATTGTTACGTCTTCAGATACGCAGT 409
******* * * * ** * * ** * * * **** ** * * *
consensus_8440#1 TCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGGTAGGTT 535
consensus_8440#2 TCTAAAACGTGTTCTCGTTTTATTGCTATCATCTCATAAATTCCTTGTACTAGCTGCTTT 285
consensus_8440#0 CTAGTTTTGTTTCTTTGTCATCCT-CGGTCGCACCAAGCAATTCTAGTCTTGATTCATGT 468
** * * ** * * * ** ** * * ** ** * * *
consensus_8440#1 AA-----CTCATACTCAGC-ATTAATCTAATGGTTA---TTTTTAGCTGCTTTACG---- 582
consensus_8440#2 ACGCCTTCTAAGACGTGTT-GTCCATATGAAAGAAGAATTTTATAATCGTTATTTGATCA 344
consensus_8440#0 GCTACTGTTCTGCCTCATCCATCCAATTTCTCACCCAAATCTGTAATGGATAATTTAACT 528
* * * * * * * ** * *
consensus_8440#1 ------------------------------------------------------------
consensus_8440#2 AAAACAATCTTTTTAAACCAGTTTTGAAGCTTTTCGTTTCCAACGGATATCGTTACAACC 404
consensus_8440#0 GACAATTTATGCATACCTTCACGTTCAGGATCTCTGTGTGATAGACTTCGTTTACGTCCT 588
consensus_8440#1 ------------------------------------------------------------
consensus_8440#2 TGTTGGACTCAGCCATTATCGAACTTTTTGACTATATTCGCACTGAAGAAATAACTTCCT 464
consensus_8440#0 CACACTGTTCTTTTGAATGATGANTATGAGTCTTCTACAGCGCGTCTTAAATTTGGTCGT 648
consensus_8440#1 ------------------------------------------------------------
consensus_8440#2 TAATTACCCATATAATAGAAAATTATTGGGATATTNTGAAAAATATAAATTACGTACAAA 524
consensus_8440#0 CAAACTCCAATAGCAATTCATATTA----------------------------------- 673
consensus_8440#1 ---
consensus_8440#2 CGT 527
consensus_8440#0 ---
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||