These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCGCTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTATTTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATCTCAGCGGAGGAGGAAGATGGTCTCACGCAGC] [+] EMBL CD184608 [GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCGCTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGG ] [+] EMBL CD069789 [ CCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCCGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTATTTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATCTCAGCGGAGGAGGAAGATGGTCTCACGCAGC] consensusID : consensus_8449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATTTCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAATCATGAGATAGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTAACTTGAGATAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT] [+] EMBL CD078879 [CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATTTCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAATCATGAGATAGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTAACTTGAGATAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT] [-] EMBL CD162659 [ ACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATTTCAGCGGAGGAGGAAGATGGTCTCA ] consensusID : consensus_8449#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 383 fasta sequence [GCGGCCAAAAATTCGGCACGAGGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTC] [+] EMBL CD077732 [GCGGCCAAAAATTCGGCACGAGGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTC] [-] EMBL CD063004 [ GGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATcaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8449#0 GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCG 60 consensus_8449#2 ------------------------------------------------------------ consensus_8449#1 ------------------------------------------------------------ consensus_8449#0 CTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAA 120 consensus_8449#2 ----------------GCGGCCAAAAATTCGGCACGA--------GGGCGGAATCTAAAA 36 consensus_8449#1 ------------------------------------------------------------ consensus_8449#0 ATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA 180 consensus_8449#2 ATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA 96 consensus_8449#1 ---------------CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA 45 * * *********************************** consensus_8449#0 ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG 240 consensus_8449#2 ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG 156 consensus_8449#1 ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG 105 ************************************************************ consensus_8449#0 CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA 300 consensus_8449#2 CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA 216 consensus_8449#1 CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA 165 ************************************************************ consensus_8449#0 CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC 360 consensus_8449#2 CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC 276 consensus_8449#1 CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC 225 ************************************************************ consensus_8449#0 TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTAT 420 consensus_8449#2 TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAG---------- 326 consensus_8449#1 TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAG---------- 275 ************************************************** consensus_8449#0 TTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCC 480 consensus_8449#2 ---------------------------CTTGTAAGCTCCTCGTTAGCCAATACAATGTCC 359 consensus_8449#1 ---------------------------CTTGTAAGCTCCTCGTTAGCCAATACAATGTCC 308 ********************************* consensus_8449#0 ATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGA 540 consensus_8449#2 ATTTCAACCCCTGAAAACGAAGTC------------------------------------ 383 consensus_8449#1 ATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGA 368 ************************ consensus_8449#0 ATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATC 600 consensus_8449#2 ------------------------------------------------------------ consensus_8449#1 ATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATT 428 consensus_8449#0 TCAGCGGAGGAGGAAGATGGTCTCACGCAGC----------------------------- 631 consensus_8449#2 ------------------------------------------------------------ consensus_8449#1 TCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAATCATGAGAT 488 consensus_8449#0 ------------------------------------------------------------ consensus_8449#2 ------------------------------------------------------------ consensus_8449#1 AGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTAACTTGAGA 548 consensus_8449#0 ------------------------------------------------- consensus_8449#2 ------------------------------------------------- consensus_8449#1 TAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT 597 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||