cluster # 8451

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Schistosoma mansoni
cluster # 8451 cluster # 8451 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8451#0 length = 610 sequences # 2

consensus_8451#1 length = 584 sequences # 3
consensus_8451#2 length = 498 sequences # 1

consensusID : consensus_8451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [TGATAGATAGCTTTTCTGAGTACTAACTATGAATCAATAGTTCTTTATTATGTATGACGTGAACTTAAGTTAATTATAGAAAACAAATTCAGCCAAAAAGTCTTACAGTTATCACAACATTATGCTATGTAGTAATTTTTACTGAAATGTTCTCCATAAAACTAGGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATAT-GGAGTCAATTAAATCGTGATGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTAATAGTGCGTGGAAGTGCGATGATGGAACTGGTTGGGATAATCGTTGGACATCTTTACTACTTTTTCGTTTTCCAGTATCCACAAGAGTATGGTGGTCAAGCTATATTAAAGACTCCTGGATTTCTATACAGACTATTCCCAAACCAAAGAGGTATTACAACTGGTTTTGGAGAAGCCCCACGCGCAAGACAACCAATTACATCTACGGGAAGATTTCCTGGACACGGNCAGGTTTTGGGAAACGATGAATAAGGCTCATTTCTTTCCTTGACTAATCTGTATATCAGAGTAAATTGAATAAAAAGAACTT]

[+] EMBL CD078471             [TGATAGATAGCTTTTCTGAGTACTAACTATGAATCAATAGTTCTTTATTATGTATGACGTGAACTTAAGTTAATTATAGAAAACAAATTCAGCCAAAAAGTCTTACAGTTATCACAACATTATGCTATGTAGTAATTTTTACTGAAATGTTCTCCATAAAACTAGGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATAT GGAGTCAATTAAATCGTGATGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTAATAGTGCGTGGAAGTGCGATGATGGAACTGGTTGGGATAATCGTTGGACATCTTTACTACTTTTTCGTTTTCCAGTATCCACAAGAGTATGGTGGTCAAGCTATATTAAAGACTCCTGGATTTCTATACAGACTATTCCCAAACCAAAGAGGTATTACAACTGGTTTTGGAGAAGCCCCACGCGCAAGACAACCAATTACATCTACGGGAAGATTTCCTGGACACGGNCAGGTTTTGGGAAACGATGAATAAGGCTCATTTCTTTCCTTGACTAATCTGTATATCAGAGTAAATTGAATAAAAAGAACTT]
[-] EMBL AI067725             [                                                                                                                                                                                               AGTGC TTATATATGGGAGTCAATTAAATCGTGATGTTATTGTTCAATTNTGTTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTAATAGTGCGTGGAAGTGCGATGATGGAACTGGTTGGGATAATCGTTGGACATCTTTACTACTTTTTCGTTTTCCAGTATCCACAAGAGTATGGTGGTCAAGCTATATTAAAGACTCCTGGATTTCTATACAGACTATTCCCAAACCAAAGAGGTATTACAACTGGTTTTGGAGAAGCCCCACGCGCAAGACAACCAATTACATCTACGGGAAGATTTCCTGGACACGGCCAGGTTTTGGGAAACGATGAATAAGGCTCATTTCTTTCCTTGACTAATCTGTA                             ]




>consensus_8451#0
TGATAGATAGCTTTTCTGAGTACTAACTATGAATCAATAGTTCTTTATTATGTATGACGT
GAACTTAAGTTAATTATAGAAAACAAATTCAGCCAAAAAGTCTTACAGTTATCACAACAT
TATGCTATGTAGTAATTTTTACTGAAATGTTCTCCATAAAACTAGGTGCTTCTGGAGCCA
ATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTTATTGTTCAATTT
TGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTA
ATAGTGCGTGGAAGTGCGATGATGGAACTGGTTGGGATAATCGTTGGACATCTTTACTAC
TTTTTCGTTTTCCAGTATCCACAAGAGTATGGTGGTCAAGCTATATTAAAGACTCCTGGA
TTTCTATACAGACTATTCCCAAACCAAAGAGGTATTACAACTGGTTTTGGAGAAGCCCCA
CGCGCAAGACAACCAATTACATCTACGGGAAGATTTCCTGGACACGGNCAGGTTTTGGGA
AACGATGAATAAGGCTCATTTCTTTCCTTGACTAATCTGTATATCAGAGTAAATTGAATA
AAAAGAACTT

consensusID : consensus_8451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 584
fasta sequence

                              [ACGTCCAGCTACACGCCGTGGGACTTTGTATGAAAAATTTCCAATATCGATTGTAGACAAATTAAGTAGTACTTCAACAAACATTGATTTTATCTGCTTTTAAACTGTACAAACATGCCTGGGAATGACCTGTCTGATATGTTCAATAACATCCCTCCTGTCACTCGTTATTGGTTCTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTATGATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATTGTTGTTCTATCCAGTATCTCCATCAACTGGATTTCACTTCCTAATCAATCTGTACTTCTTGTATTCATACTCCTCTCGATTAGAAAATGGTATGTTCCTCGGACGCACTGCAGATTATGTATTTATGTTTTTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTTGGCTTCATTTTACGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTT]

[-] EMBL CD155106             [ACGTCCAGCTACACGCCGTGGGACTTTGTATGAAAAATTTCCAATATCGATTGTAGACAAATTAAGTAGTACTTCAACAAACATTGATTTTATCTGCTTTTAAACTGTACAAACATGCCTGGGAATGACCTGTCTGATATGTTCAATAACATCCCTCCTGTCACTCGTTATTGGTTCTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTATGATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATTGTTGTTCTATCCAGTATCTCCATCAACTGGATTTCACTTCCTAATCAATCTGTACTTCTTGTATTCATACTCCTCTCGATTAGAAAATGGTATGTTCCTCGGACGCACTGCAGATTATGTATTTATGTTTTTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTTGGCTTCATTTTACGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTT]
[+] EMBL CD160894             [ACGTCCAGCTACACGCCGTGGGACTTTGTATGAAAAATTTCCAATATCGATTGTAGACAAATTAAGTAGTACTTCAACAAACATTGATTTTATCTGCTTTTAAACTGTACAAACATGCCTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD160859             [ CGTCCAGCTACACGCCGTGGGACTTTGTATGAAAAATTTCCAATATCGATTGTAGACAAATTAAGTAGTACTTCAACAAACATTGATTTTATCTGCTTTTAAACTGTACAAACATGCCTGGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_8451#1
ACGTCCAGCTACACGCCGTGGGACTTTGTATGAAAAATTTCCAATATCGATTGTAGACAA
ATTAAGTAGTACTTCAACAAACATTGATTTTATCTGCTTTTAAACTGTACAAACATGCCT
GGGAATGACCTGTCTGATATGTTCAATAACATCCCTCCTGTCACTCGTTATTGGTTCTCG
GGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTATGATT
TTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATTGTTG
TTCTATCCAGTATCTCCATCAACTGGATTTCACTTCCTAATCAATCTGTACTTCTTGTAT
TCATACTCCTCTCGATTAGAAAATGGTATGTTCCTCGGACGCACTGCAGATTATGTATTT
ATGTTTTTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTTGGCTTCATTTTACGTG
CTTCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTT
ATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTT

consensusID : consensus_8451#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [GCCTCGAGGCAAGAATCGGCACGAGGTCAATAACATCCCTCCTGTCACTCGTTATTGGTTCTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTATGATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATTGTTGTTCTATCCAGTATCTCCATCATCTGGATTTCACTTCCTAATCAATCTGTACTTCTTGTATTCATACTCCTCTCGATTAGAAAATGGTATGTTCCTCGGACGCACTGCAGATTATGTATTTATGTTTTTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTTGGCTTCATTTTACGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTAAT]

[+] EMBL CD083674             [GCCTCGAGGCAAGAATCGGCACGAGGTCAATAACATCCCTCCTGTCACTCGTTATTGGTTCTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTATGATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATTGTTGTTCTATCCAGTATCTCCATCATCTGGATTTCACTTCCTAATCAATCTGTACTTCTTGTATTCATACTCCTCTCGATTAGAAAATGGTATGTTCCTCGGACGCACTGCAGATTATGTATTTATGTTTTTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTTGGCTTCATTTTACGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTAAT]




>consensus_8451#2
GCCTCGAGGCAAGAATCGGCACGAGGTCAATAACATCCCTCCTGTCACTCGTTATTGGTT
CTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTAT
GATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATT
GTTGTTCTATCCAGTATCTCCATCATCTGGATTTCACTTCCTAATCAATCTGTACTTCTT
GTATTCATACTCCTCTCGATTAGAAAATGGTATGTTCCTCGGACGCACTGCAGATTATGT
ATTTATGTTTTTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTTGGCTTCATTTTA
CGTGCTTCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGA
TGTTATTGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTT
GGTAATATTTAACTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8451#1      --ACGTCCAGCTACACGCCGTGG-GACTTTGTATGAAAAATTTCCAATATCGATTGTAGA 57
consensus_8451#2      ------------------------------------------------------------
consensus_8451#0      TGATAGATAGCTTTTCTGAGTACTAACTATGAATCAATAGTTCTTTATTATGTATGACGT 60
                                                                                  

consensus_8451#1      CAAATTAAGT-AGTACTTCAACAAACATTGATTTTATCTGCTTTTAAACTGTACAAACAT 116
consensus_8451#2      ------------------------------------------------------------
consensus_8451#0      GAACTTAAGTTAATTATAGAAAACAAATTCAGCCAAAAAGTCTTACAGTTATCACAACAT 120
                                                                                  

consensus_8451#1      GCCTGGGAATGACCTGTCTGATATGTTCAATAACATCCCTCCTGTCACTCGTTATTGGTT 176
consensus_8451#2      GCCTCGAGGCAAGAATCGGCACGAGGTCAATAACATCCCTCCTGTCACTCGTTATTGGTT 60
consensus_8451#0      TATGCTATGTAGTAATTTTTA------CTGAAATGTTCTCCATAAAACTAGGT----GCT 170
                                          *      *   **  * *  * *   *** * *    * *

consensus_8451#1      CTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTAT 236
consensus_8451#2      CTCGGGGACAATATTATTTTCACTTCTCGGTAAATTTAATGTTATTGATCCCATGCGTAT 120
consensus_8451#0      TCTGGAGCCAATGGTACTGACAGTGCTTTATATATGGAGTCAATTAAATCGTGATGTTAT 230
                         ** * ****  ** *  ** * **   ** **  * *    *  ***       ***

consensus_8451#1      GATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATT 296
consensus_8451#2      GATTTTGTTGTGGAACAGAATGTATTCCCACTTCGAGATATGGAGACCAATCACAGCATT 180
consensus_8451#0      TGTTCAATTTTGGTTTGGTATGCAATTCAAAGCAATGTACTTTCCGTGGGTCTTGGTAAT 290
                        **   ** ***    * *** * * * *      *   *         **   * * *

consensus_8451#1      GTTGTTCTATCCAGTATCTCCATCAAC-----TGGATTTCACTTCC-TAATCAATCTGTA 350
consensus_8451#2      GTTGTTCTATCCAGTATCTCCATCATC-----TGGATTTCACTTCC-TAATCAATCTGTA 234
consensus_8451#0      ATTTAACTTAATAGTGCGTGGAAGTGCGATGATGGAACTGGTTGGGATAATCGTTGGACA 350
                       **   **    ***   *  *    *     ****  *   *    *****  *    *

consensus_8451#1      CTTCTTGTATTCATACTCCTCTCGAT-TAGAAAATGGTATGTTCCTCGGAC-GCACTGCA 408
consensus_8451#2      CTTCTTGTATTCATACTCCTCTCGAT-TAGAAAATGGTATGTTCCTCGGAC-GCACTGCA 292
consensus_8451#0      TCTTTACTACTTTTTCGTTTTCCAGTATCCACAAGAGTATGGTGGTCAAGCTATATTAAA 410
                        * *  ** *  * *   *  *  * *  * **  ***** *  **   *   * *  *

consensus_8451#1      GATTA-TGTATTTATGTTT---TTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTT 464
consensus_8451#2      GATTA-TGTATTTATGTTT---TTGTTCACTTGGTTAGCACTGGTGATTGTTAGTTTCTT 348
consensus_8451#0      GACTCCTGGATTTCTATACAGACTATTCCCAAACCAAAGAGGTATTACAACTGGTT--TT 468
                      ** *  ** **** * *      * *** *      *  *    * *    * ***  **

consensus_8451#1      GGCTTCATTTTACGTGCTTCTGGAGCCAATGGTACTGACAGTG---CTTTATATATGGAG 521
consensus_8451#2      GGCTTCATTTTACGTGCTTCTGGAGCCAATGGTACTGACAGTG---CTTTATATATGGAG 405
consensus_8451#0      GGAGAAGCCCCACGCGCAAG-ACAACCAATTACATCTACGGGAAGATTTCCTGGACACGG 527
                      **         *** **      * *****   *   ** *      **  *  *    *

consensus_8451#1      TCAA---TTAAATCGTGATGT-TATTGTTCAATTTTG-----GTTTGGTATGCAATTCAA 572
consensus_8451#2      TCAA---TTAAATCGTGATGT-TATTGTTCAATTTTG-----GTTTGGTATGCAATTCAA 456
consensus_8451#0      NCAGGTTTTGGGAAACGATGAATAAGGCTCATTTCTTTCCTTGACTAATCTGTATATCAG 587
                       **    **       ****  **  * *** ** *      *  *  * ** *  *** 

consensus_8451#1      AGCAATGTACTT------------------------------ 584
consensus_8451#2      AGCAATGTACTTTCCGTGGGTCTTGGTAATATTTAACTTAAT 498
consensus_8451#0      AGTAAATTGAATAAAAAGAACTT------------------- 610
                      ** **  *   *