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Schistosoma mansoni
cluster # 8452 cluster # 8452       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8452#0 length = 836 sequences # 5  
consensus_8452#1 length = 546 sequences # 1  

consensusID : consensus_8452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 836
fasta sequence
                              [AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATAACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTGGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTCGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAATAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGGTTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGATACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT]

[-] EMBL CD194383             [AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATAACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD201581             [                                                           AACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD071941             [                                                                                                                                                     CAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTC TTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTGGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTCGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAATAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCA                                                                                                                                                                                                                                                                ]
[+] EMBL CD091922             [                                                                                                                                                                                                                            TCATTTCTTTTTTTATCTTGAAGTGCCGTTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTCGGTCTGAGGTACTGNNNAGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD149768             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTACTAAAGACTTGTCTCTGTACAAAAATAAAGAAAGGTTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGATACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT]


>consensus_8452#0 AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATA ACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAA TGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAA TGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTG AAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTG GTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTC GAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAAT AACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAAC CTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTC ATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGGTT GTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTG TGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTA CGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGA TACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT



consensusID : consensus_8452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence
                              [TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGAAAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCAAAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATATAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAAGTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCATTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGCATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCTCACCAA]

[+] EMBL CD201339             [TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGAAAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCAAAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATATAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAAGTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCATTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGCATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCTCACCAA]


>consensus_8452#1 TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCA AAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGA AAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCA AAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATA TAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTT TGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAA GTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCA TTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGC ATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCT CACCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8452#0      AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATA 60
consensus_8452#1      ------------------------------------------------------------
                                                                                  

consensus_8452#0      ACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAA 120
consensus_8452#1      ------------------------------------------------------------
                                                                                  

consensus_8452#0      TGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAA 180
consensus_8452#1      ------------------------------------------------------------
                                                                                  

consensus_8452#0      TGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTG 240
consensus_8452#1      -------------------------TTGAGGACACCGAGGAC--------TTCGATTTCG 27
                                                    ** *    ** *        **  ** * *

consensus_8452#0      AAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGA-CCACTTGGTGAGCTAGGTT 299
consensus_8452#1      AAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTG 87
                      **  *    * * *    ** * ***  * * * *   *  ***  * **     **** 

consensus_8452#0      GGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTT 359
consensus_8452#1      GGT---AAGACCGATTCTAAG--AATTCATTACATTGAAAGTAAATT---ACCAGTTATT 139
                      ***   * *  * * *   **  * **   * ****  ** * *      ** *    **

consensus_8452#0      CGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAA 419
consensus_8452#1      ACTGGTCGCCGCGTTCGCACTATTCAC---TGGTTCAGTCCGCAAAATTTCTTTATTCAG 196
                           ***  *   ***   *  ***    **      ****  * * *   *   * * 

consensus_8452#0      TAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCT-TGATTTCCA 478
consensus_8452#1      TTAGTAGAGACTTAGTATGA--TTGAATTGAAGTCACCCACATATATAGTATGCCTTTCG 254
                      * * * ***  **   **    **  * *  ***          * *  * **  ** * 

consensus_8452#0      ACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCC 538
consensus_8452#1      ATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTG------TTTATT 308
                      *       *  **** *  *    * *  *   * * **    ** **      * *   

consensus_8452#0      TCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGG 598
consensus_8452#1      TGGCTAGATACAGATTCGATTGTCTTTAAA---TTGGATTAA---GAGGTTAAAATAAGT 362
                      *         *   *** * *   * ****   ***  ** *    *   ****  *** 

consensus_8452#0      TTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCT 658
consensus_8452#1      GTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTC--ATTAACTCACATCCA 420
                       *  *  **       * **      *  **   **** ****  * *  ***  *  * 

consensus_8452#0      TGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGAC 718
consensus_8452#1      TTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTAT-ATGTCTGCCACAGTTTAAAG 479
                      * * *  * * *   *   *    **    *****  ** **** *  ***** *   * 

consensus_8452#0      TACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTG 778
consensus_8452#1      CA---TATTTAGTTTGTTTC---------GCTTAACTTGATTGTCCATTTTATCCTTTTA 527
                       *   * *****  * ***             **   *  ****  **  * *   *** 

consensus_8452#0      GAT--ACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT 836
consensus_8452#1      GACCAACCTAGCTCACCAA----------------------------------------- 546
                      **   *****  **   *                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)