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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 836 fasta sequence
[AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATAACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTGGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTCGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAATAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGGTTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGATACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT]
[-] EMBL CD194383 [AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATAACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTG ]
[-] EMBL CD201581 [ AACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAATGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTT ]
[+] EMBL CD071941 [ CAACTTCGAATTCCTCAGCAAACATATCAAATGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTC TTTTTTATCTTGAAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTTGGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTTCGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAATAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCTTGATTTCCAACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCA ]
[+] EMBL CD091922 [ TCATTTCTTTTTTTATCTTGAAGTGCCGTTGCGGCTGGAGCTTGAACACCTGATAGACGACCACTTGGTGAGCTAGGTCGGTCTGAGGTACTGNNNAGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACTTTTC ]
[-] EMBL CD149768 [ AGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCCTCATCTTCCTCGTTTTCAACTAGTACTAAAGACTTGTCTCTGTACAAAAATAAAGAAAGGTTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCTTGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGACTACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTGGATACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT]
consensusID : consensus_8452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGAAAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCAAAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATATAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAAGTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCATTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGCATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCTCACCAA]
[+] EMBL CD201339 [TTGAGGACACCGAGGACTTCGATTTCGAAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTGGGTAAGACCGATTCTAAGAATTCATTACATTGAAAGTAAATTACCAGTTATTACTGGTCGCCGCGTTCGCACTATTCACTGGTTCAGTCCGCAAAATTTCTTTATTCAGTTAGTAGAGACTTAGTATGATTGAATTGAAGTCACCCACATATATAGTATGCCTTTCGATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTGTTTATTTGGCTAGATACAGATTCGATTGTCTTTAAATTGGATTAAGAGGTTAAAATAAGTGTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTCATTAACTCACATCCATTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTATATGTCTGCCACAGTTTAAAGCATATTTAGTTTGTTTCGCTTAACTTGATTGTCCATTTTATCCTTTTAGACCAACCTAGCTCACCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8452#0 AGTATATCCGTAAACAGCATAACGCTTATCCAAAACTTCCCCAATCCGAACACGGTAATA 60
consensus_8452#1 ------------------------------------------------------------
consensus_8452#0 ACCTTCAGCATCGTCCCAATTGTCAGATAGGGCATGATTTTCGGAGGCCATAGCCCCCAA 120
consensus_8452#1 ------------------------------------------------------------
consensus_8452#0 TGCCATTGTCCCCGGAGCATGATGCAGCTCAACTTCGAATTCCTCAGCAAACATATCAAA 180
consensus_8452#1 ------------------------------------------------------------
consensus_8452#0 TGTAGAGGGTTTGGAATTGTTTTGTCCAGAGATATTTGGGTCATTTCTTTTTTTATCTTG 240
consensus_8452#1 -------------------------TTGAGGACACCGAGGAC--------TTCGATTTCG 27
** * ** * ** ** * *
consensus_8452#0 AAGTGCCATTGCGGCTGGAGCTTGAACACCTGATAGACGA-CCACTTGGTGAGCTAGGTT 299
consensus_8452#1 AAAGGTTTGTCCAGGCTAAGTTAGAATGCATCAAAATGGCTCCAACTAGTACCTCAGGTG 87
** * * * * ** * *** * * * * * *** * ** ****
consensus_8452#0 GGTCTGAGGTACTAGTTGGAGCCATTTTGATGCATTCTAACTTAGCCTGGACAAACCTTT 359
consensus_8452#1 GGT---AAGACCGATTCTAAG--AATTCATTACATTGAAAGTAAATT---ACCAGTTATT 139
*** * * * * * ** * ** * **** ** * * ** * **
consensus_8452#0 CGAAATCGAAGTCCTCGGTGTCCTCAAACGTGACCATATCCGTCAGACTGTCTGCCTGAA 419
consensus_8452#1 ACTGGTCGCCGCGTTCGCACTATTCAC---TGGTTCAGTCCGCAAAATTTCTTTATTCAG 196
*** * *** * *** ** **** * * * * * *
consensus_8452#0 TAACTTGAGGATTGTGATCGCTTTCGAGTTTAGTGGTTGGAGCTTCTCCT-TGATTTCCA 478
consensus_8452#1 TTAGTAGAGACTTAGTATGA--TTGAATTGAAGTCACCCACATATATAGTATGCCTTTCG 254
* * * *** ** ** ** * * *** * * * ** ** *
consensus_8452#0 ACCTCTAACTTTTCTAGTAACTTTTGTCTTTCGATACGTCTTCGTCTGATAATCTCTTCC 538
consensus_8452#1 ATAGTGTTCCATTCTTGCTAAAAGTATAGTCGCACAAGTAGCAGTTTG------TTTATT 308
* * **** * * * * * * * ** ** ** * *
consensus_8452#0 TCATCTTCCTCGTTTTCAACTAGTTCTAAAGACTTGTCTTCATACAAAAATAAAGAAAGG 598
consensus_8452#1 TGGCTAGATACAGATTCGATTGTCTTTAAA---TTGGATTAA---GAGGTTAAAATAAGT 362
* * *** * * * **** *** ** * * **** ***
consensus_8452#0 TTGTGAGTCGCTCATTGCCTGAGATGGATTTATGATTATCTTCGAAATGTCTCTTAGTCT 658
consensus_8452#1 GTTGGTATCAACTCCAGTCTATTTCCGTATTGAAATTAGCTTC--ATTAACTCACATCCA 420
* * ** * ** * ** **** **** * * *** * *
consensus_8452#0 TGTGAGATTTCTTTTCATGATGAGATCGTTTACTTTCATGATGTGTATCACAGCTGGGAC 718
consensus_8452#1 TTTCAAGTATGTAGACTACAAACTATTTAGTACTTCTAT-ATGTCTGCCACAGTTTAAAG 479
* * * * * * * * ** ***** ** **** * ***** * *
consensus_8452#0 TACGATGTTTAGACTTTTTGCGACGACGGATATAGTCTTCTTGTTGATCGTGTGACTTTG 778
consensus_8452#1 CA---TATTTAGTTTGTTTC---------GCTTAACTTGATTGTCCATTTTATCCTTTTA 527
* * ***** * *** ** * **** ** * * ***
consensus_8452#0 GAT--ACCTATTTCGGTAGTAGTTATCATCGTATTTATCTACATGTCCCCAGTGGTTGCT 836
consensus_8452#1 GACCAACCTAGCTCACCAA----------------------------------------- 546
** ***** ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||