These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1398 fasta sequence [CTATAGGCTGTTGCAGATAATCTCATTGTTTTCATTGACAGAGACTTACACGAAGTGGGATCACTTCTTACACCTTCAAGTAGAAGTAATTACAGCAAACTTTTGATGAAAAGCGTTTATAATTTATTTTCACGCTCAAGTATGTGTTGTGTTCGGGGTCTATCTAGTGGCTTACTTTATGGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAAGTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTCTACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATATCACTATCGCATGCTGGTTCTGAAAAAAATGAATCCCGTAAATATCCTGCAATTATTCTAGAAGGAAGCAAACTAATATCAGATGCACTTGCGACAGGGGCAAAAGCCACCTCTTTGTTCTTTTCTTCACAAGATGTTCTGCAAAAAGTCGGTGATTTAAGCAATGTATTAAATATCTACTACGTCAAGCATCAAGTTATGG-GCCGAATCTCGTCACTTCAATCTCCTCCCGGAGTAATAGCCCTCTTTGAATTACCACAACAAGACTGTTTCAAGAGAAAAAATGCGAAATTTTGCTTACCTGTTACTCTTATACTTGATCGAATTAACGATCCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG-AATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAAT-TTTTATGTTCTTAAT-GGGATGTACTTTTTTTACGAATAAACAGATTTTTATCCNTAAAAAAAAAAAAAA] [-] EMBL CD146959 [CTATAGGCTGTTGCAGATAATCTCATTGTTTTCATTGACAGAGACTTACACGAAGTGGGATCACTTCTTACACCTTCAAGTAGAAGTAATTACAGCAAACTTTTGATGAAAAGCGTTTATAATTTATTTTCACGCTCAAGTATGTGTTGTGTTCGGGGTCTATCTAGTGGCTTACTTTATGGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAAGTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTCTACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATATCA ] [+] EMBL CD141713 [ GTGGCTTACTTTATGGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAAGTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTCTACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATATCACTATCGCATGCTGGTTCTGAAAAAAATGAATCCCGTAAATATCCTGCAATTATTCTAGAAGGAAGCAAACTAATATCAGATGCACTTGCGACAGGGGCAAAAGCCACCTCTTTGTTCTTTTCTTCACAAGATGTTCTGCAAAAAGTCGGTGATTTAAGCAATGTATTAAATATCTACTACGTCAAGCATCAAGTTATGG GCCGAATCTCGTCACT ] [+] EMBL CD080397 [ gaggATTAAATATCTACTACGTCAAGCATCAAGTTATGGAGCCGAATCTCGTCACTTCAATCTCCTCCCGGAGTAATAGCCCTCTTTGAATTACCACAACAAGACTGTTTCAAGAGAAAAAATGCGAAATTTTGCTTACCTGTTACTCTTATACTTGATCGAATTAACGATCCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGGTATTCCATCTGCAGATAGAATAAGCAGCTTGAAATG TTTATCAGCTGCTTCAGTTNTGCTCGGAGAAATAC ACGTCATTNNNNTATG TCTTAATGGGGATGTAC TTTTTTACG ATAAACAGAT ] [-] EMBL CD074490 [ GTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG AATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAAT TTTTATGTTCTTAAT GGGATGTACTTTTTTTACGAATAAACAGATT ] [-] EMBL CD074312 [ GGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCCCAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG AATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAAT TTTTATGTTCTTAAT GGGATGTACTTTTTTTACGAATAAACAGATT ] [+] EMBL AF030962 [ nTCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCNGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG AATGTTTTATCANCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCNAN TTTNANNTNCTTAAT GGGATGTACTTTTTTTACNAATAANCAGATTTTTATCCNTAAAAAAAAAAAAAA] consensusID : consensus_8463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [ATTCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGGCAGTGTCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAATTTTTATGTTCTTAATGGGATGTATTTTTTTACGAATAAACAGA] [-] EMBL CD077082 [ATTCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGGCAGTGTCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAATTTTTATGTTCTTAATGGGATGTATTTTTTTACGAATAAACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8463#0 CTATAGGCTGTTGCAGATAATCTCATTGTTTTCATTGACAGAGACTTACACGAAGTGGGA 60 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TCACTTCTTACACCTTCAAGTAGAAGTAATTACAGCAAACTTTTGATGAAAAGCGTTTAT 120 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 AATTTATTTTCACGCTCAAGTATGTGTTGTGTTCGGGGTCTATCTAGTGGCTTACTTTAT 180 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAA 240 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTC 300 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATA 360 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TCACTATCGCATGCTGGTTCTGAAAAAAATGAATCCCGTAAATATCCTGCAATTATTCTA 420 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GAAGGAAGCAAACTAATATCAGATGCACTTGCGACAGGGGCAAAAGCCACCTCTTTGTTC 480 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TTTTCTTCACAAGATGTTCTGCAAAAAGTCGGTGATTTAAGCAATGTATTAAATATCTAC 540 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 TACGTCAAGCATCAAGTTATGGGCCGAATCTCGTCACTTCAATCTCCTCCCGGAGTAATA 600 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 GCCCTCTTTGAATTACCACAACAAGACTGTTTCAAGAGAAAAAATGCGAAATTTTGCTTA 660 consensus_8463#1 ------------------------------------------------------------ consensus_8463#0 CCTGTTACTCTTATACTTGATCGAATTAACGATCCTGGAAATATGGGCAGTTTGATCCGT 720 consensus_8463#1 -------------------------------ATTCTGGAAATATGGGCAGTTTGATCCGT 29 ** ************************** consensus_8463#0 TCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCA 780 consensus_8463#1 TCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAG--------------GCA 75 ******************************************* *** consensus_8463#0 GTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATAC 840 consensus_8463#1 GTGTCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATAC 135 *** ******************************************************** consensus_8463#0 CTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTT 900 consensus_8463#1 CTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTT 195 ************************************************************ consensus_8463#0 CATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAA 960 consensus_8463#1 CATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAA 255 ************************************************************ consensus_8463#0 TCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCA 1020 consensus_8463#1 TCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCA 315 ************************************************************ consensus_8463#0 AAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCAT 1080 consensus_8463#1 AAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCAT 375 ************************************************************ consensus_8463#0 ATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATA 1140 consensus_8463#1 ATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATA 435 ************************************************************ consensus_8463#0 ACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTT 1200 consensus_8463#1 ACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTT 495 ************************************************************ consensus_8463#0 CTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTG 1260 consensus_8463#1 CTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTG 555 ************************************************************ consensus_8463#0 CAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATAC 1320 consensus_8463#1 CAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATAC 615 ************************************************************ consensus_8463#0 AACGTCAATTTTTATGTTCTTAATGGGATGTACTTTTTTTACGAATAAACAGATTTTTAT 1380 consensus_8463#1 AACGTCAATTTTTATGTTCTTAATGGGATGTA-TTTTTTTACGAATAAACAGA------- 667 ******************************** ******************** consensus_8463#0 CCNTAAAAAAAAAAAAAA 1398 consensus_8463#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||