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Schistosoma mansoni
cluster # 8464 cluster # 8464       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8464#0 length = 1019 sequences # 3  
consensus_8464#1 length = 776 sequences # 3  
consensus_8464#2 length = 470 sequences # 1  

consensusID : consensus_8464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1019
fasta sequence
                              [TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCCTAATACGTTCACATGAAACAAGAGAA-TACCAGTCGGATTCCAATGACAACAGACGACAATATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTACGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAGAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG]

[+] EMBL AI395289             [TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCCTAATACGTTCACATGAAACAAGAGAA TACCAGTCGGATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD135923             [                                                                                                                                                                                             GAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATTACCATTCGGATTCCAATGACAACAGACGACAATATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD145017             [                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTACGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAGAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG]


>consensus_8464#0 TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGA CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA AATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC CTAATACGTTCACATGAAACAAGAGAATACCAGTCGGATTCCAATGACAACAGACGACAA TATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAA CCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAA CTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTAC GTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAG AGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAG ATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGG AGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGC ACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAG CAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGA AGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG



consensusID : consensus_8464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 776
fasta sequence
                              [TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCAGAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTCCATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCATTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGT-ATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAG-----CTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC]

[-] EMBL AI975570             [TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCAGAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTCCATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCATTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGC                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD188012             [                                                                                                                                                                                                                                                                                                                                                                                    CGAACGCTATTTACTTCATTTTCGTTAGCGTCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGT ATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAGCTTTTCTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC]
[+] EMBL CD201166             [                                                                                                                                                                                                                                                                                                                                                                                        CGCTATTTACTTCACTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGTAATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAG     CTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTG                                                                                                                                        ]


>consensus_8464#1 TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATC TTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCA GAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTC CATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAA TCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCA TTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCT GACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACA TTACGCGGAAGTGCAGATTTACAGGGTATGGTTTGTCCGAACAATCACTATCAGTAACGA ATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAGCTATATTGT ACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTC ATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTC AGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANC CTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC



consensusID : consensus_8464#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAATATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA]

[+] EMBL AI395278             [TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAATATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA]


>consensus_8464#2 TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATT AATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAAC CTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAA TATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGAC CATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAA ATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCT TAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAAT ATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8464#0      TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT 60
consensus_8464#2      -TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT 59
consensus_8464#1      ----------------------------------------------TGTAATGTGTAAGC 14
                                                                      ****   ***  

consensus_8464#0      TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA 120
consensus_8464#2      TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA 119
consensus_8464#1      -AGCCATGA-TGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTG 72
                       *   * ** *  **  * *  ****  * ***  *  **     ** *  **  *    

consensus_8464#0      CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA 180
consensus_8464#2      CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA 179
consensus_8464#1      TCTGATGAAGCAGTAACAACGCGGTTAGCAGACC-CCATGAATTTAGCAGAGATAACACG 131
                       **  *  * *  * *  ***    **  ***    **  ***   *   * ** *    

consensus_8464#0      ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGA 240
consensus_8464#2      ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGA 239
consensus_8464#1      CTCAGAATGCCCTGTCAAGTTGACTCG--AAGTCTGGAATCATTTAGTGTCCATACACGA 189
                       *  *** *    *  ***   *        **  * **     *       * * ****

consensus_8464#0      CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA 300
consensus_8464#2      CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA 299
consensus_8464#1      CAAGAAAAATCACTTGA-CGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGC 248
                      * *    **  * *  *    * **  * ***        ***   *  **  ** **  

consensus_8464#0      AATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC 360
consensus_8464#2      AATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC 359
consensus_8464#1      AGTGAC--AGCAG-CATTACAACCATCAAGGGTTG---AATGGATTTCACATTTTCCATT 302
                      * * *   *  *   *  * * ****  *   **    * * **    *** ** *  * 

consensus_8464#0      CTAATACGTTCACATGAAACAAGAGAATACCAGTCGGATTCCAATGACAACAGACGACAA 420
consensus_8464#2      TTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAA 419
consensus_8464#1      TAGATATGTCCATA----ATCGGAGTTTACGA-TCAAACCCTGCTGATC-----CGAAAA 352
                         *** ** ** *    *   ***  *** * **  *  *   ***       *** **

consensus_8464#0      TATTTGTGTGATCACGGAGACAAATTTCTAAATTCC-CTGAAACTGTACTCCAAATATAA 479
consensus_8464#2      TATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA--------- 470
consensus_8464#1      TGTG-GCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTG 411
                      * *       *        *   *        *          *                

consensus_8464#0      ACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGA 539
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      ACTGCAACATTACGCGGAAGTGCAGATTTACAGGGTATGGTTTGTCCGAACAATCACT-- 469
                                                                                  

consensus_8464#0      ACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTA 599
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      ATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTG 529
                                                                                  

consensus_8464#0      CGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCA 659
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      AGCTATATTGTACATCATAC----TCAATATTTTTTAACCTTTCAACAGTGG----ATTG 581
                                                                                  

consensus_8464#0      GAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAG-TATTTTCTCC 718
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      GAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGT 641
                                                                                  

consensus_8464#0      AGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACAT 778
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      TTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAA-----GCAATTCT 696
                                                                                  

consensus_8464#0      GGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACA 838
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      TTAGTCTCCTCCAGCTCC--TTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAG 754
                                                                                  

consensus_8464#0      GCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTT 898
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      CCTTAAGACAGTCTTCTAACTC-------------------------------------- 776
                                                                                  

consensus_8464#0      AGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTC 958
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      ------------------------------------------------------------
                                                                                  

consensus_8464#0      GAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCT 1018
consensus_8464#2      ------------------------------------------------------------
consensus_8464#1      ------------------------------------------------------------
                                                                                  

consensus_8464#0      G 1019
consensus_8464#2      -
consensus_8464#1      -
                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)