These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence [TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCCTAATACGTTCACATGAAACAAGAGAA-TACCAGTCGGATTCCAATGACAACAGACGACAATATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTACGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAGAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG] [+] EMBL AI395289 [TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCCTAATACGTTCACATGAAACAAGAGAA TACCAGTCGGATTCC ] [+] EMBL CD135923 [ GAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATTACCATTCGGATTCCAATGACAACAGACGACAATATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACT ] [+] EMBL CD145017 [ TGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTACGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAGAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG] consensusID : consensus_8464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 776 fasta sequence [TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCAGAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTCCATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCATTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGT-ATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAG-----CTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC] [-] EMBL AI975570 [TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCAGAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTCCATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCATTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGC ] [+] EMBL CD188012 [ CGAACGCTATTTACTTCATTTTCGTTAGCGTCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGT ATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAGCTTTTCTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC] [+] EMBL CD201166 [ CGCTATTTACTTCACTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGTAATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAG CTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTG ] consensusID : consensus_8464#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAATATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA] [+] EMBL AI395278 [TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAATATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8464#0 TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT 60 consensus_8464#2 -TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT 59 consensus_8464#1 ----------------------------------------------TGTAATGTGTAAGC 14 **** *** consensus_8464#0 TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA 120 consensus_8464#2 TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA 119 consensus_8464#1 -AGCCATGA-TGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTG 72 * * ** * ** * * **** * *** * ** ** * ** * consensus_8464#0 CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA 180 consensus_8464#2 CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA 179 consensus_8464#1 TCTGATGAAGCAGTAACAACGCGGTTAGCAGACC-CCATGAATTTAGCAGAGATAACACG 131 ** * * * * * *** ** *** ** *** * * ** * consensus_8464#0 ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGA 240 consensus_8464#2 ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGA 239 consensus_8464#1 CTCAGAATGCCCTGTCAAGTTGACTCG--AAGTCTGGAATCATTTAGTGTCCATACACGA 189 * *** * * *** * ** * ** * * * **** consensus_8464#0 CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA 300 consensus_8464#2 CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA 299 consensus_8464#1 CAAGAAAAATCACTTGA-CGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGC 248 * * ** * * * * ** * *** *** * ** ** ** consensus_8464#0 AATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC 360 consensus_8464#2 AATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC 359 consensus_8464#1 AGTGAC--AGCAG-CATTACAACCATCAAGGGTTG---AATGGATTTCACATTTTCCATT 302 * * * * * * * * **** * ** * * ** *** ** * * consensus_8464#0 CTAATACGTTCACATGAAACAAGAGAATACCAGTCGGATTCCAATGACAACAGACGACAA 420 consensus_8464#2 TTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAA 419 consensus_8464#1 TAGATATGTCCATA----ATCGGAGTTTACGA-TCAAACCCTGCTGATC-----CGAAAA 352 *** ** ** * * *** *** * ** * * *** *** ** consensus_8464#0 TATTTGTGTGATCACGGAGACAAATTTCTAAATTCC-CTGAAACTGTACTCCAAATATAA 479 consensus_8464#2 TATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA--------- 470 consensus_8464#1 TGTG-GCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTG 411 * * * * * * * consensus_8464#0 ACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGA 539 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 ACTGCAACATTACGCGGAAGTGCAGATTTACAGGGTATGGTTTGTCCGAACAATCACT-- 469 consensus_8464#0 ACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTA 599 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 ATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTG 529 consensus_8464#0 CGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCA 659 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 AGCTATATTGTACATCATAC----TCAATATTTTTTAACCTTTCAACAGTGG----ATTG 581 consensus_8464#0 GAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAG-TATTTTCTCC 718 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 GAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGT 641 consensus_8464#0 AGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACAT 778 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 TTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAA-----GCAATTCT 696 consensus_8464#0 GGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACA 838 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 TTAGTCTCCTCCAGCTCC--TTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAG 754 consensus_8464#0 GCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTT 898 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 CCTTAAGACAGTCTTCTAACTC-------------------------------------- 776 consensus_8464#0 AGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTC 958 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 ------------------------------------------------------------ consensus_8464#0 GAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCT 1018 consensus_8464#2 ------------------------------------------------------------ consensus_8464#1 ------------------------------------------------------------ consensus_8464#0 G 1019 consensus_8464#2 - consensus_8464#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||