cluster # 8469

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Schistosoma mansoni
cluster # 8469 cluster # 8469 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8469#0 length = 654 sequences # 3
consensus_8469#1 length = 528 sequences # 1

consensus_8469#2 length = 453 sequences # 1
consensus_8469#3 length = 223 sequences # 1
consensus_8469#4 length = 145 sequences # 1

consensusID : consensus_8469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 654
fasta sequence

                              [TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGATTTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAAGAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTCGAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAACACCTTCTGTTGATATATTCAAGACGAGATTGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATAGACCTCCTATCCTTATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAATACAAGATTTTGCTTAGTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAGTCAGGACCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCAAGTCCTTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGTACACGAAGCCTCTTAAAGGACTCTTGAAGAGTCTCAGTTGACATTCAATTCCAG]

[+] EMBL CD190111             [TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGATTTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAAGAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTCGAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAATTACTG                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD114960             [                                                                                                                        GAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTCGAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCCCTCACCTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAACACCTTCTGTTGATATATTCAAGACGAGATTGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATAGACCTCCTATCCTTATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAATACAAGATTTTGCTTAGTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAGTCAGGACCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCAAGTCCTTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGTACACGAAGCCTCTTAAAGGACTCTTG                            ]
[-] EMBL CD202602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCACTGGTGCCTTTAAGTCAGGGCCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCCCCCCCCTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGTACACGAAGCCTNTTAAAGGACTCTTGAAGAGTCTCAGTTGACATTCAATTCCAG]




>consensus_8469#0
TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGAT
TTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAA
GAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTC
GAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAATTACT
GGAATTCTCTACCAGAACACGTAATATCAACACCTTCTGTTGATATATTCAAGACGAGAT
TGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATAGACCTCCTATCCT
TATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAATACAAGATTTTGCTTA
GTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAGTCAGGACCTGGGTAT
GTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCAAGTCCTTG
AGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGT
ACACGAAGCCTCTTAAAGGACTCTTGAAGAGTCTCAGTTGACATTCAATTCCAG

consensusID : consensus_8469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [CCACAGCACCAGTGGAGTTCAAACCACGTCTGTTGTGAGATATCAACTCACTGAAGACACTTGGTGAACGGTTGCTCAACTTCGTGGATTGGTTCAAGTTAGACATTAACACCGTTATATGCCGACTCAGTGGTCTATCGGTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCGAATGTTGCGAGGCGAGGTCGTGGATGTTTAAGATCAATCAATTTCACTACATGTATACCGACATTGTCCACTTAGGGCAAAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCTTTTTTAAAGAAGTTCTGTACTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGTTCTTCAATATCAAGGAACCATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCCGAACGATTGTCTAAAGATATTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTTATGTCAAATGACATATTTTCATGTTTACATATTCTGATATTACAAATT]

[+] EMBL CD087601             [CCACAGCACCAGTGGAGTTCAAACCACGTCTGTTGTGAGATATCAACTCACTGAAGACACTTGGTGAACGGTTGCTCAACTTCGTGGATTGGTTCAAGTTAGACATTAACACCGTTATATGCCGACTCAGTGGTCTATCGGTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCGAATGTTGCGAGGCGAGGTCGTGGATGTTTAAGATCAATCAATTTCACTACATGTATACCGACATTGTCCACTTAGGGCAAAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCTTTTTTAAAGAAGTTCTGTACTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGTTCTTCAATATCAAGGAACCATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCCGAACGATTGTCTAAAGATATTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTTATGTCAAATGACATATTTTCATGTTTACATATTCTGATATTACAAATT]




>consensus_8469#1
CCACAGCACCAGTGGAGTTCAAACCACGTCTGTTGTGAGATATCAACTCACTGAAGACAC
TTGGTGAACGGTTGCTCAACTTCGTGGATTGGTTCAAGTTAGACATTAACACCGTTATAT
GCCGACTCAGTGGTCTATCGGTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCG
AATGTTGCGAGGCGAGGTCGTGGATGTTTAAGATCAATCAATTTCACTACATGTATACCG
ACATTGTCCACTTAGGGCAAAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCT
TTTTTAAAGAAGTTCTGTACTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGT
TCTTCAATATCAAGGAACCATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCC
GAACGATTGTCTAAAGATATTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTT
ATGTCAAATGACATATTTTCATGTTTACATATTCTGATATTACAAATT

consensusID : consensus_8469#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [TTTACAAATTAAAGTATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATTATATTTTTGGTACAATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTTACTTCTTTGTCTTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCCAGTCAATCGACATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGATATCTCTGATTACGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGCATCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCAATAAATATGAACCATTATGGTTACATTAGTATA]

[+] EMBL CD067057             [TTTACAAATTAAAGTATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATTATATTTTTGGTACAATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTTACTTCTTTGTCTTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCCAGTCAATCGACATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGATATCTCTGATTACGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGCATCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCAATAAATATGAACCATTATGGTTACATTAGTATA]




>consensus_8469#2
TTTACAAATTAAAGTATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATT
ATATTTTTGGTACAATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTT
ACTTCTTTGTCTTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCC
AGTCAATCGACATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGAT
ATCTCTGATTACGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGC
ATCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGAT
AACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCA
ATAAATATGAACCATTATGGTTACATTAGTATA

consensusID : consensus_8469#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [AGGCCTCCCACGATCTACACATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACTTTCGAATGGTCAGGAATATCACCTTATAATCAATCACGCAATCATTCTAATTTTGGTGGTAAGAATTTAGAGGAAATGAACACTAAATTCAGTCCACACACACATGGCAATTCATCAAACAGTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC]

[+] EMBL CD060964             [AGGCCTCCCACGATCTACACATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACTTTCGAATGGTCAGGAATATCACCTTATAATCAATCACGCAATCATTCTAATTTTGGTGGTAAGAATTTAGAGGAAATGAACACTAAATTCAGTCCACACACACATGGCAATTCATCAAACAGTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC]




>consensus_8469#3
AGGCCTCCCACGATCTACACATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACTT
TCGAATGGTCAGGAATATCACCTTATAATCAATCACGCAATCATTCTAATTTTGGTGGTA
AGAATTTAGAGGAAATGAACACTAAATTCAGTCCACACACACATGGCAATTCATCAAACA
GTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC

consensusID : consensus_8469#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [AGGTCGATTTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTGCACAGCAAATAATAGGGTGGATCCTACTTCTGATAATTCTGTCCTACTAGTTGCAGACAACCTAGTTCAAGATGTCATCATCTCTGCCACTCAAGGGT]

[+] EMBL CD166445             [AGGTCGATTTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTGCACAGCAAATAATAGGGTGGATCCTACTTCTGATAATTCTGTCCTACTAGTTGCAGACAACCTAGTTCAAGATGTCATCATCTCTGCCACTCAAGGGT]




>consensus_8469#4
AGGTCGATTTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTGCACAGCAAATAAT
AGGGTGGATCCTACTTCTGATAATTCTGTCCTACTAGTTGCAGACAACCTAGTTCAAGAT
GTCATCATCTCTGCCACTCAAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGAT 60
consensus_8469#2      ------------------------------------------------------------
consensus_8469#1      ------------------------------------CCACAGCACCAGTGGAGTTCAAAC 24
                                                                                  

consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      TTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAA 120
consensus_8469#2      ----------------------------------------------TTTACAAATTAAAG 14
consensus_8469#1      CACGTCTGTTGTGAGATATCAACTCACTGAAGACACTTGGTGAACGGTTGCTCAACTTCG 84
                                                                                  

consensus_8469#3      AGGCCTCCCACGATCTACAC-ATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACT 59
consensus_8469#4      ------------AGGTCGAT-TTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTG 47
consensus_8469#0      GAATCTATTCTGAGCTATAC-GTTCG--GGCTGATCATTTGAGAGGACATTCGAAGAAAG 177
consensus_8469#2      TATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATTATATTTTTGGTACA 74
consensus_8469#1      TGGATTGGTTCAAGTTAGAC-ATTAA---CACCGTTATATGCCGACTCAGTGGTCTATCG 140
                                  *     *   **            *           *           

consensus_8469#3      TTCGAATGGTCAGGAATATCACC-TTATAATCAATCACGCAATCATTCTAATTTTGGTGG 118
consensus_8469#4      CACAGCAAATAATAGGGTGGATC-CTACTTCTGATAATTCTGTCCTACTAGTTGCAG--- 103
consensus_8469#0      TTCGAAAACCGAGATCAAATCGT-CTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAAT 236
consensus_8469#2      ATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTTACTTCTTTGTCTTT 134
consensus_8469#1      GTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCGAATGTTGCGAGGCGAGGTCG 200
                                               *                *  *              

consensus_8469#3      TA--AGAATTTAGAGGAA--ATGAACACTAAATTCAGT---CCACA-CACACATGGCAAT 170
consensus_8469#4      ----ACAACCTAGTTCAA--GATGTCATCATCTCTG-----CCACT-CAAGGGT------ 145
consensus_8469#0      TACTGGAATTCTCTACCA--GAACACGTAATATCAA------CACC-TTCTGTTGATATA 287
consensus_8469#2      CCTGACGATAAATATTGA--GTGGTCGCCAGTTAGAAGTTAGCAGC-CCAGTCAATCGAC 191
consensus_8469#1      TG-GATGTTTAAGATCAATCAATTTCACTACATGTATACCGACATTGTCCACTTAGGGCA 259
                                       *       *   *  *         **                

consensus_8469#3      TCATCAAACAGTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC------- 223
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      TTCAAGACGAGATTGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATA 347
consensus_8469#2      ATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGATATCTCTGATTA 251
consensus_8469#1      AAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCTTTTTTAAAGAAGTTCTGTA 319
                                                                                  

consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      --GACCTCCTATCCTTATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAAT 405
consensus_8469#2      --CGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGCAT-CTGAAT 308
consensus_8469#1      CTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGTTCTTCAATATCAAGGAACC 379
                                                                                  

consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      ACAAGATTTTGCTTAGTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAG 465
consensus_8469#2      AGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTT 368
consensus_8469#1      ATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCCGAACGATTGTCTAAAGATA 439
                                                                                  

consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      TCAGGACCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAA 525
consensus_8469#2      GAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCAATAAATAT 428
consensus_8469#1      TTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTTATGTCAAATGACATATTTT 499
                                                                                  

consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      TGTCCCAAGTCCTTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATG 585
consensus_8469#2      GAACCATTATGGTTACATTAGTATA----------------------------------- 453
consensus_8469#1      CATGTTTACATATTCTGATATTACAAATT------------------------------- 528
                                                                                  

consensus_8469#3      ------------------------------------------------------------
consensus_8469#4      ------------------------------------------------------------
consensus_8469#0      CAAATCCCCCAAAGTACACGAAGCCTCTTAAAGGACTCTTGAAGAGTCTCAGTTGACATT 645
consensus_8469#2      ------------------------------------------------------------
consensus_8469#1      ------------------------------------------------------------
                                                                                  

consensus_8469#3      ---------
consensus_8469#4      ---------
consensus_8469#0      CAATTCCAG 654
consensus_8469#2      ---------
consensus_8469#1      ---------