cluster # 8470

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Schistosoma mansoni
cluster # 8470 cluster # 8470 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8470#0 length = 804 sequences # 6

consensus_8470#1 length = 260 sequences # 1

consensusID : consensus_8470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 804
fasta sequence

                              [GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTCTTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGCTACTAATTCAGAAAAATGCTCGAA]

[+] EMBL CD117715             [GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTCTTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTANAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTA                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD117045             [GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTCTTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTGGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAG TACATTAGATGAAGCACTGTTTGGATTA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD186431             [                                                                ATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCTGCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAAACAGCTTGTACCACATTAATGTATATTTGACGAAGATAATAATTTGTGTCTACCGCAAGAGCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAAGTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACTTGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGA                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD111458             [                                                                                                                                                                                                                                                                                                                                                                                                     AGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCTGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGCTACTAATTCAGAAAAATGCTCGA ]
[-] EMBL CD110850             [                                                                                                                                                                                                                                                                                                                                                                                                      GTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGCTACTAATTCAGAAAAATGCTCGAA]
[+] EMBL CD111567             [                                                                                                                                                                                                                                                                                                                                                                                                    agaTGGAAGTATTTGATGCATTTATTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGC TTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTCGTAACCATGCGAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTTATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTGCCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAG                         ]




>consensus_8470#0
GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTC
TTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCT
GCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAA
ACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGA
GCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAA
GTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACT
TGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTA
GTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCA
GAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACA
TGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATC
TCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTT
ATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTG
CCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGC
TACTAATTCAGAAAAATGCTCGAA

consensusID : consensus_8470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [AGTGGAAGTATTTGATGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTAGTAAGG]

[-] EMBL CD191235             [AGTGGAAGTATTTGATGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCAGAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTTGCAAGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATCTAGTAAGG]




>consensus_8470#1
AGTGGAAGTATTTGATGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGC
ATTTGTTCCACTAGTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTAC
ACTACCTGAACCAGAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTTGCA
AGCTCCCGGACATGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACA
CCAAGCTGGATCTAGTAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8470#0      GGTGCTTGGCAACCTTTGGGAACTGTCGTAACATTTGAATTATCTGAATTTGTGGGGTTC 60
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      TTCGATGTTTTTGATGACAAATAAGCATAGATGTTACGGGAAGCAGGAAAGAGAATTCCT 120
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      GCGCTAGGATCATCACCTAGGGCACTGTAAGGAGGTTCATCCAAGATACCAGGACCCCAA 180
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      ACAGCTTGTACCACATTAATGTATATTTGACGAAGATGATAATTTGTGTCTACCGCAAGA 240
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      GCTTTTAAACCACCTGCAGCAGCTTGTGTAGTTAAAGCATTCGCTGGATTAACAGCAGAA 300
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      GTATTTGATGTAGTTGAAGATAGGGTAGAAAGACCGGAAGTATTTGCTTGATCTAACACT 360
consensus_8470#1      --------------------------------AGTGGAAGTATTTGAT------------ 16
                                                      *  *********** *            

consensus_8470#0      TGAGCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTA 420
consensus_8470#1      ---GCATTTGTTGAACTAGGAAGATTACCAGTGGAAGTATTTGATGCATTTGTTCCACTA 73
                         *********************************************************

consensus_8470#0      GTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCA 480
consensus_8470#1      GTTGGATTAGTTACATTAGATGAAGCACTGTTTGGATTAGAAGTTACACTACCTGAACCA 133
                      ************************************************************

consensus_8470#0      GAATTTGTACTCGGTTTAGATCCTACTCCACTGAATGCTTTTTTTGCAAGCTCCCGGACA 540
consensus_8470#1      GAATTTGTACTCGTTTTAGATCCTACTCCACTGAATGCTTTTTT-GCAAGCTCCCGGACA 192
                      ************* ****************************** ***************

consensus_8470#0      TGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATC 600
consensus_8470#1      TGCTACCAAAAGACGAGCAAGACTACGACAAGCACATTCACGAACACACCAAGCTGGATC 252
                      ************************************************************

consensus_8470#0      TCGTAACCATGCAAGATTTGCGGGTAAAACAGTTTCCTGTAAACAGTTTTCCGGCAACTT 660
consensus_8470#1      TAGTAAGG---------------------------------------------------- 260
                      * ****                                                      

consensus_8470#0      ATCATATAAACAAGGTACTGATTGAACAACACCAAGACGAACACGCCAATTTTTATCTTG 720
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      CCAAAGACGAAGAAGACTTGGTAATAAAGTCAACTGAATCTCGTTAGCAGGCATTAAAGC 780
consensus_8470#1      ------------------------------------------------------------
                                                                                  

consensus_8470#0      TACTAATTCAGAAAAATGCTCGAA 804
consensus_8470#1      ------------------------