cluster # 8473

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Schistosoma mansoni
cluster # 8473 cluster # 8473 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8473#0 length = 758 sequences # 3

consensus_8473#1 length = 641 sequences # 3
consensus_8473#2 length = 278 sequences # 1

consensusID : consensus_8473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 758
fasta sequence

                              [GGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGAATAGCTCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGCTGTTGAAAAAGAAGACAACCTTGCTTCTCCAATTTTCGTTCAGGAATTAACACCATTAAATATTTCTGAAGGTGATGAAATTTATTTAACAGCTACTGTTAAAGGAAATCCGCAACCTGTAAAAGTGATTTGGAAACATAAATGGAAATATACTTCAGCCAGATGTGACTGATGCTGTAATATTCTATACTCCTGAAACAGGTGTTTGTGAATTAACAATATCTGAAGCATTTCCTGAAGATTCAGGAATTTATTCTGTTGAAGTTCAGAATACTCTTGGTATGGCCGTTAGTCAAACTGAAGTAGTTGTATTGGTAGAGGTA]

[+] EMBL CD194853             [GGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGAATAGCTCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGGCCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGCTGTTGAAAAAGAAGACAACCTTGCTTCTCCAATTTTCGTTCAGGAATTAACACCATTAAATATTTCTGAAGGTGATGAAATTTATTTAACAGCTACTGTTAAAGGAAATCCGCAACCTGTAAAAGTGATTTGGAAACATAAATGGAA                                                                                                                                                                                ]
[+] EMBL CD178597             [            TGAGACCAAACAACAAATGACTAAAATAATTTCATCTGGCTCAATTGTTACAATTGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAGTCTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGAATAGCTCGCCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCTATTGTTACAATTGAAGCTGTTGAAA                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD184339             [                                                                                                                                                                                             AATTCAGGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGAATAGCTCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGCTGTTGAAAAAGAAGACAACCTTGCTTCTCCAATTTTCGTTCTGGAATTAACACCATTAAATATTTCTGAAGGTGATGAAATTTATTTAACAGCTACTGTTAAAGGAAATCCGCAACCTGTAGAAGTGATTTGGAAACAT AATGGAAATATACTTCAGCCAGATGTGACTGATGCTGTAATATTCTATACTCCTGAAACAGGTGTTTGTGAATTAACAATATCTGAAGCATTTCCTGAAGATTCAGGAATTTATTCTGTTGAAGTTCAGAATACTCTTGGTATGGCCGTTAGTCAAACTGAAGTAGTTGTATTGGTAGAGGTA]




>consensus_8473#0
GGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGT
TACAATTGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCAC
CTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACT
GGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAA
GGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGAATAGCTCG
TCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGG
TGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAAT
TGTTACAATTGAAGCTGTTGAAAAAGAAGACAACCTTGCTTCTCCAATTTTCGTTCAGGA
ATTAACACCATTAAATATTTCTGAAGGTGATGAAATTTATTTAACAGCTACTGTTAAAGG
AAATCCGCAACCTGTAAAAGTGATTTGGAAACATAAATGGAAATATACTTCAGCCAGATG
TGACTGATGCTGTAATATTCTATACTCCTGAAACAGGTGTTTGTGAATTAACAATATCTG
AAGCATTTCCTGAAGATTCAGGAATTTATTCTGTTGAAGTTCAGAATACTCTTGGTATGG
CCGTTAGTCAAACTGAAGTAGTTGTATTGGTAGAGGTA

consensusID : consensus_8473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 641
fasta sequence

                              [ATTTACCAATGATTGAAGATGTTATTACTGAATTACCAACGATCCCGGAAATGTTAACTATTCAATCAAAACTAATTGAACATGAATATGAATTTCATTTTATTAAACCAATTCATTATGAAATACAACAACATTCAAATGATGAATATACATTAGAATTAGAATGTCAATTAATAACAGATCAACAACCAGCATCTATTAAATGGAGTCATGAAGGTGTTGAATTAAATATTTCTGATCGTATTGAACAGGTTTATGAATATGAAAGTGGTTTAGCTAAATTAATTATACATAATATTACACCACAAGATATGGGTGAATACACTTGTATTGCTACAAAAGTTCAACTTCAACCTTCACAAGTTGAACCAATACAGAAAACAATAACTACAAGTACTGTTGTGGATATAGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCCATTTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGGATAGGT]

[+] EMBL CD190931             [ATTTACCAATGATTGAAGATGTTATTACTGAATTACCAACGATCCCGGAAATGTTAACTATTCAATCAAAACTAATTGAACATGAATATGAATTTCATTTTATTAAACCAATTCATTATGAAATACAACAACATTCAAATGATGAATATACATTAGAATTAGAATGTCAATTAATAACAGATCAACAACCAGCATCTATTAAATGGAGTCATGAAGGTGTTGAATTAAATATTTCTGATCGTATTGAACAGGTTTATGAATATGAAAGTGGTTTAGCTAAATTAATTATACATAATATTACACCACAAGATATGGGTGAATACACTTGTATTGCTACAAAAGTTCAACTTCAACCTTCACAAGTTGAACCAATACAGAAAACAATAACTACAAGTACTGTTGTGGATATAGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAGCAGATNTAAAGCCTATTGAAGTTGTGTGGG                                                                       ]
[+] EMBL CD194376             [                                                                                                                                                                                                                                                                                                                                                                          agTGAACCAATACAGAAAACAATAACTACAAGTACTGTTGTGGATATAGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACTCCGAATATCCACACTGTACAAGACCATAAGGATGTTGAACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTG                                                                                   ]
[-] EMBL CD202434             [                                                                                                                                                                                                                                                                                                                                                                                        GAAAACAATAACTACAAGTACTGTTGTGGATATAGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCCATTTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGGATAGGT]




>consensus_8473#1
ATTTACCAATGATTGAAGATGTTATTACTGAATTACCAACGATCCCGGAAATGTTAACTA
TTCAATCAAAACTAATTGAACATGAATATGAATTTCATTTTATTAAACCAATTCATTATG
AAATACAACAACATTCAAATGATGAATATACATTAGAATTAGAATGTCAATTAATAACAG
ATCAACAACCAGCATCTATTAAATGGAGTCATGAAGGTGTTGAATTAAATATTTCTGATC
GTATTGAACAGGTTTATGAATATGAAAGTGGTTTAGCTAAATTAATTATACATAATATTA
CACCACAAGATATGGGTGAATACACTTGTATTGCTACAAAAGTTCAACTTCAACCTTCAC
AAGTTGAACCAATACAGAAAACAATAACTACAAGTACTGTTGTGGATATAGAAGTTCCTG
AAACGACAGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTACAACCAGTAA
CACCGAATATCCACACTGTACAAGACCATAAGGATCTTGAACTGGAATGTCAAATTCAAG
CAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCCATTTG
ATCGTAATGAAATGATCTATTTTGAAGATAGTGGGATAGGT

consensusID : consensus_8473#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [TTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTGNAAGATAGTAGAATAGCTCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGTTCCTGAAACGACGGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTA]

[-] EMBL CD199192             [TTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTGNAAGATAGTAGAATAGCTCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGTTCCTGAAACGACGGAAGTTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTA]




>consensus_8473#2
TTGAAGTTGTGTGGGAAGTTGATGGCAAGGAATTAACTCAATCTGATCGTAATGAAATGA
TCTATTTGNAAGATAGTAGAATAGCTCGTCTAATAGTACATCAAGTGATCCCATCGGATT
CCGGTGAATACACTTGCAGAGTTCAAGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAA
TGACTAAAACAATTTCATCTGGCTCAATTGTTACAATTGAAGTTCCTGAAACGACGGAAG
TTGTGCCAACAGTAACTGAGAAGGTTCTCACCTTCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8473#0      GGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTCAATTGT 60
consensus_8473#2      ------------------------------------------------------------
consensus_8473#1      --------------------ATTTACCAATGATTGAAGATGTTATTACTGAATTACCAAC 40
                                                                                  

consensus_8473#0      TACAATTGAAGTTCCTGAAACGACAGAAGTTGTGCCAACAGTAACTGAGAA-GGTTCTCA 119
consensus_8473#2      ------------------------------------------------------------
consensus_8473#1      GATCCCGGAAATGTT---AACTATTCAATCAAAACTAATTGAACATGAATATGAATTTCA 97
                                                                                  

consensus_8473#0      CCTTCTTACAACCAGTAACACCGAATATCCACACTGTACAA--GACCATAAGGATCTTGA 177
consensus_8473#2      ------------------------------------------------------------
consensus_8473#1      TTTTATTAAACCAATTCATTATGAAATACAACAACATTCAAATGATGAATATACATTAGA 157
                                                                                  

consensus_8473#0      ACTGGAATGTCAAATTCAAGCAGATTTAAAGCCTATTGAAGTTGTGTGGGAAGTTGATGG 237
consensus_8473#2      -----------------------------------TTGAAGTTGTGTGGGAAGTTGATGG 25
consensus_8473#1      ATTAGAATGTCAATTAATAACAGATCAACAACCAGCATCTATTAAATGGAGTCATGAAGG 217
                                                               **   ***     *** **

consensus_8473#0      CAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTTGAAGATAGTGGAATAGC 297
consensus_8473#2      CAAGGAATTAACTCAATCTGATCGTAATGAAATGATCTATTTGNAAGATAGTAGAATAGC 85
consensus_8473#1      TGTTGAATTAAATATTTCTGATCGTATTGAACAGGTTTATGAATATGAAAGTGGTTTAGC 277
                          ******* *   ********** ****  * * ***    * ** *** *  ****

consensus_8473#0      TCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCA 357
consensus_8473#2      TCGTCTAATAGTACATCAAGTGATCCCATCGGATTCCGGTGAATACACTTGCAGAGTTCA 145
consensus_8473#1      TAAATTAATTATACATAATATTACACCACAAGATATGGGTGAATACACTTGTATTGCTAC 337
                      *    ****  ***** *  * *  ***   ***   ************** *  * *  

consensus_8473#0      AGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTC 417
consensus_8473#2      AGGTGAGGTGGTTGAAGCTGAGACCAAACAACAAATGACTAAAACAATTTCATCTGGCTC 205
consensus_8473#1      AAAAGTTCAACTTCAACCTTCACAAGTTGAACCAATACAGAAAACAATAACTACAAGTAC 397
                      *   *      ** ** **          *** ***    ********  *  *  *  *

consensus_8473#0      AATTGTTACAATTGAAGCTGTTGAAAAAGAAGACAACCTTGCTTCTCCAATTTTCGTTCA 477
consensus_8473#2      AATTGTTACAATTGAAGTTCCTGAAACGACGGAAG---TTGTGCCAACAGTAACTGAGAA 262
consensus_8473#1      TGTTGTGGATATAGAAGTTCCTGAAACGACAGAAG---TTGTGCCAACAGTAACTGAGAA 454
                        ****    ** **** *  *****     **     ***   *  ** *    *   *

consensus_8473#0      GGAATTAACACCATTAAATATTTCTGAAGGTGATGAAATTTATTTAACAGCTACTGTTAA 537
consensus_8473#2      GGTTCTCACCTTCTTA-------------------------------------------- 278
consensus_8473#1      GGTTCTCACCTTCTTACAA----CCAGTAACACCGAA---TATCCA-----CACTGTACA 502
                      **   * **    ***                                            

consensus_8473#0      AGGAAATCCGCAACCTGTAAAAGTGATTTGGAAACATAAATGGAAATATACTTCAGCCAG 597
consensus_8473#2      ------------------------------------------------------------
consensus_8473#1      AGACCATAAGGATCTTGAA--------CTGGAATGTCAAATTCAAGCAGATTTAAAGCCT 554
                                                                                  

consensus_8473#0      ATGTGACTGATGCTGTAATATTCTATACTCCTGAAACAGGTGTTTGTGAATTAACAATAT 657
consensus_8473#2      ------------------------------------------------------------
consensus_8473#1      ATTGAAGTTGTGTGGGAAG--TTGATGGCAAGGAATTAACTCCATTTGA-TCGTAATGAA 611
                                                                                  

consensus_8473#0      CTGAAGCATTTCCTGAAGATTCAGGAATTTATTCTGTTGAAGTTCAGAATACTCTTGGTA 717
consensus_8473#2      ------------------------------------------------------------
consensus_8473#1      ATGATCTATTT--TGAAGATAGTGGGATAGGT---------------------------- 641
                                                                                  

consensus_8473#0      TGGCCGTTAGTCAAACTGAAGTAGTTGTATTGGTAGAGGTA 758
consensus_8473#2      -----------------------------------------
consensus_8473#1      -----------------------------------------