These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1231 fasta sequence [GGGCCATATTCGGCCGCAGCGTGATCTGAGCTCGTGGGAAGTGCATATTTGGCTGTAAAATGTCGTTCTGCTTCGTGCAGATAGTAATAACCTCGGTTTAACGCTTAAAGGATAATCAGTTTGTCTTATTTTCGCTCGTGTCGTCGCAGTTTTGTTCGACCCTCTTCGTAATTTTGCGTCAGCGGACCTCCAGAGAAAGCACGTTCTGCAAAGACCAGAAGTTTCACTGTCTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAATGAGTCTCCTCGATAGCTGGAATTCACCTAAATACGTTTTAGCACCTATGGTTGATGGGAGTGAACTTGCCTGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTTTCACACCCATGATTAACTCGACTGCATTTCTCATTAACATGAAATACCGCCGCAGTTGCTTGCAGTTCGCCTCAGAAGATCGACCACTTATTGTTCAATTTTGTGCTAATTCTCCAGATACGTTCGTTAGGTGTGCTAAGTTGGTGCAGCCCTTCTGCGATGCAGTCGACCTGAATCTCGGTTGCCCCCAAGGAATAGCTAAAAGAGGGCATTATGGTGCGTTTTTGCAAGATGAGTGGAATTCTCTTAAGGATATTATTAGCCGCGCTTCGTTAGAGCTTAATGTTCCCGTCACTTGCAAAATCCGAATCTTTAGTGACGTTGAGCGAACTGTTCAGTATGCANAACTTCTCGAAGCTGCAGGGGCTTCTATGCTTACAGTTCACGGACGCACCAGAGAAATGAAAGGTCANAAAACTGGACTAGCTGACTGGAATCAAATTAGGGCAGTAAAAGAAGCCGTAAAAATACCCTGTTATTGCCAATGGGATATTCAGTATTTATCAGATGTTCATCAGTGTTTGGACTCACCAAAAGCCGACGCAGTTATGAGTGCAGGTTTCTGTATATCCAAAATGTTGTTTATTTCATTTTTTTGAATGCATTTCTTTAGAGCTACAGTCCGCCATATGTNTAGTTCTAGTTTTCGTTAGGATGAAATCGATAACTACTTAATTGGATTTGCAGACCTAGATTTCTTTACCCATTATTTCCTCTGGCTANGATGGTTGNATCACCGCCATCCCTGTTTCCTATATGTTATGATCTGNGAAAAGTATTCTACCTTAATACTATTTCTCGATTAATCTGCTGACGCCACTTATCTTTTTCGATTATACATTGAGAATATT] [+] EMBL CD081732 [GGGCCATATTCGGCCGCAGCGTGATCTGAGCTCGTGGGAAGTGCATATTTGGCTGTAAAATGTCGTTCTGCTTCGTGCAGATAGTAATAACCTCGGTTTAACGCTTAAAGGATAATCAGTTTGTCTTATTTTCGCTCGTGTCGTCGCAGTTTTGTTCGACCCTCTTCGTAATTTTGCGTCAGCGGACCTCCAGAGAAAGCACGTTCTGCAAAGACCAGAAGTTTCACTGTCTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAATGAGTCTCCTCGATAGCTGGAATTCACCTAAATACGTTTTAGCACCTATGGTTGATGGGAGTGAACTTGCCTGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTTTCACACCCATGATTAACTCGACTGCATTTCTCATTAACATGAAATACCGCCGCAGTTGCTTGCAGTTCGCCTCAGAAGATCGACCACTTATTGTTCAATTTTGTGCTAATTCTCCAGATACGTTCGTTAGGTGTGCTAAGTTGGTGCAGCCCTTCTGCGATGCAGTCGACCTGAATCTCGGTTGCCCCCAAGGAATAGCTAAAAGAGGGCATTATGGTGCGTTTTTGCAAGATGAGTGGAATTCTCTTAAGGATATTATTAGCCGCGCTTCGTTAGAGCTTAATGTTCCCGTCACTTGCAAAATCCGAATCTTTAGTGACGTTGAGCGAACTGTTCAGTATGCANAACTTCTCGAAGCTGCAGGGGCTTCTATGCTTACAGTTCACGGACGCACCAGAGAAATGAAAGGTCANAAAACTGGACTAGCTGACTGGAATCAAATTAGGGCAGTAAAAGAAGCCGTAAAAATACCCTGTTATTGCCAATGGGATATTCAGTATTTATCAGATGTTCATCAGTGTTTGGACTCACCAAAAGCCGACGCAGTTATGAGTGCAGGTTTCTGTATATCCAAAATGTTGTTTATTTCATTTTTTTGAATGCATTTCTTTAGAGCTACAGTCCGCCATATGTNTAGTTCTAGTTTTCGTTAGGATGAAATCGATAACTACTTAATTGGATTTGCAGACCTAGATTTCTTTACCCATTATTTCCTCTGGCTANGATGGTTGNATCACCGCCATCCCTGTTTCCTATATGTTATGATCTGNGAAAAGTATTCTACCTTAATACTATTTCTCGATTAATCTGCTGACGCCACTTATCTTTTTCGATTATACATTGAGAATATT] [+] EMBL CD185649 [ TTCGACCCTCTTCGTAATTTTGCGTCAGCGGACCTCCAGAGAAAGCACGTTCTGCAAAGACCAGAAGTTTCACTGTCTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAATGAGTCTCCTCGATAGCTGGAATTCACCTAAATACGTTTTAGCACCTATGGTTGATGGGAGTGAACTTGCCTGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTTTCACACCCATGATTAACTCGACTGCATTTCTCATTAACGTGAAATA ] consensusID : consensus_8474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [TTCGACCTAATCTTTTAGGACGTGTCGTGATCTGAGCTCGTGGGAAGTGCATATTTGGCTGTAAAATGTCGATCTGCTTCGTGCAGATAGTAATAACCTCGGTTTAACGCTTAAAGGATAATCAGTTTGTCTTATTTTCGCTCGTGTCGTCGCAGTTTTGTTTCGACCCTCTTCGTAATTTTGCGTCAGCGGACCTCCAGAGAAAGCACGTTCTGCAAAGACCAGAAGTTTCACTGTCTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAATGAGTCTCCTTGATAGCTGGAATTCACCTAAATACGTTTTAGCACCTATGGTTGATGGGAGTGAACTTGCCTGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTGTCACACCCATGATTAACTCGACTGCATTTCTCATTAACATGAAATACCGCCGCAGTTGCTTGCAGTTCGCCTCAGAAGATCGACCACTTATTGTTCAATTNTGTGCTAATTCTCCAGATACGTTCGTTAGGTGTGCTAAGTNGGTGCAGCCCTT] [+] EMBL AI975400 [TTCGACCTAATCTTTTAGGACGTGTCGTGATCTGAGCTCGTGGGAAGTGCATATTTGGCTGTAAAATGTCGATCTGCTTCGTGCAGATAGTAATAACCTCGGTTTAACGCTTAAAGGATAATCAGTTTGTCTTATTTTCGCTCGTGTCGTCGCAGTTTTGTTTCGACCCTCTTCGTAATTTTGCGTCAGCGGACCTCCAGAGAAAGCACGTTCTGCAAAGACCAGAAGTTTCACTGTCTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAATGAGTCTCCTTGATAGCTGGAATTCACCTAAATACGTTTTAGCACCTATGGTTGATGGGAGTGAACTTGCCTGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTGTCACACCCATGATTAACTCGACTGCATTTCTCATTAACATGAAATACCGCCGCAGTTGCTTGCAGTTCGCCTCAGAAGATCGACCACTTATTGTTCAATTNTGTGCTAATTCTCCAGATACGTTCGTTAGGTGTGCTAAGTNGGTGCAGCCCTT] consensusID : consensus_8474#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AAAGCAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCTTCATCATATAGTCGGTAAGATCTCCACCAGCAAGGTCCAGACGCAAAATCGCATGAGGCAATGCATAACCTTCATAGATCGGAACTGTGTGGGTCACACCATCACCCGAGTCCAACACTATACCAGTTGTACGACCAGATGCATACAGTGACAACACCGCCTGAATAGCAACATACATAGCTGGCACATTAAACGTCTCAAACATGATCTGTGTCATCTTCTCACGATTGGCTTTCGGGTTCAGTGGAGCTTCTGTCAACAACACTGGGTGTTCCTCTGGAGCCACTCGCAACTCGGTGTAGAATG] [+] EMBL CD163645 [AAAGCAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCTTCATCATATAGTCGGTAAGATCTCCACCAGCAAGGTCCAGACGCAAAATCGCATGAGGCAATGCATAACCTTCATAGATCGGAACTGTGTGGGTCACACCATCACCCGAGTCCAACACTATACCAGTTGTACGACCAGATGCATACAGTGACAACACCGCCTGAATAGCAACATACATAGCTGGCACATTAAACGTCTCAAACATGATCTGTGTCATCTTCTCACGATTGGCTTTCGGGTTCAGTGGAGCTTCTGTCAACAACACTGGGTGTTCCTCTGGAGCCACTCGCAACTCGGTGTAGAATG] consensusID : consensus_8474#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GGTAGCATCTAAAAACAACTGGAAAGGATTGTCAAGGACTGAGTTAGATGGAGAATCCTGGTGGGAGGCCTATGCTCCTCCATGAGAGGTAACAGGCGTAAGTAAGTAAGTCTTAGTAATATATATAGATCACCAGTTCACTTAAATACTTCTGATTATCAGCTTGGTTTTGTCGAATCGTAGTCAAATCATGTAAAACCTTATTGCTGTGGATATCCTTGGAACCATTCTCATACATCAAGGATCGAACGACCGGACAACCGTAATCATTCTAATTCCTCAACGGCGTATAATTTCCAGAAGCCAGAGAAAACTAGTCAAAA] [+] EMBL CD090200 [GGTAGCATCTAAAAACAACTGGAAAGGATTGTCAAGGACTGAGTTAGATGGAGAATCCTGGTGGGAGGCCTATGCTCCTCCATGAGAGGTAACAGGCGTAAGTAAGTAAGTCTTAGTAATATATATAGATCACCAGTTCACTTAAATACTTCTGATTATCAGCTTGGTTTTGTCGAATCGTAGTCAAATCATGTAAAACCTTATTGCTGTGGATATCCTTGGAACCATTCTCATACATCAAGGATCGAACGACCGGACAACCGTAATCATTCTAATTCCTCAACGGCGTATAATTTCCAGAAGCCAGAGAAAACTAGTCAAAA] consensusID : consensus_8474#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 260 fasta sequence [GTAGGAAACTTAGTATATGAATGATTGTATTGTGGTCTAACGTTAAAGTGACTTGGATGTGATTATGGAACTCGTTTGGAAACGTATTTTTGGGGAGTCAATAAATCTTCATTGCACCAGTCTTTCGTGTTCGCACTTTGTATCGCGGGAAGTGTAGTGGGTTCCCATTTCTCTTTACACGAAGTTACTTTACTTACTTACGCCTGTTATCCCTCGTGGAGGAGCACAGGCCACCCACAAGTGCAATATAAGTGAAATAG] [+] EMBL CD199188 [GTAGGAAACTTAGTATATGAATGATTGTATTGTGGTCTAACGTTAAAGTGACTTGGATGTGATTATGGAACTCGTTTGGAAACGTATTTTTGGGGAGTCAATAAATCTTCATTGCACCAGTCTTTCGTGTTCGCACTTTGTATCGCGGGAAGTGTAGTGGGTTCCCATTTCTCTTTACACGAAGTTACTTTACTTACTTACGCCTGTTATCCCTCGTGGAGGAGCACAGGCCACCCACAAGTGCAATATAAGTGAAATAG] [+] EMBL CD199245 [ AGTATATGAATGATTGTATTGTGGTCTAACGTTAAAGTGACTTGGATGTGATTATGGAACTCGTTTGGAAACGTATTTTTGGGGAGTCAATAAATCTTCATTGCACCAGTCTTTCGTGTTCGCACTTTGTATCGCGGGAAGTGTAGTGGGTTCCCATTTCTCTTTACACGAAGTTAC TTACTTACTTACGCCTGTTATCCCTCGTGGAGGAGCACAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8474#0 ---GGGCCA---TATTCGGCCGCAGCGTGATCTGAGCTCGTGGGAAGTGCATATTTGGCT 54 consensus_8474#1 TTCGACCTAATCTTTTAGGACGTGTCGTGATCTGAGCTCGTGGGAAGTGCATATTTGGCT 60 consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 GTAAAATGTCGTTCTGCTTCGTGCAGATAGTAATAACCTCGGTTTAACGCTTAAAGGATA 114 consensus_8474#1 GTAAAATGTCGATCTGCTTCGTGCAGATAGTAATAACCTCGGTTTAACGCTTAAAGGATA 120 consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 ATCAGTTTGTCTTATTTTCGCTCGTGTCGTCGCAGTTTTGTT-CGACCCTCTTCGTAATT 173 consensus_8474#1 ATCAGTTTGTCTTATTTTCGCTCGTGTCGTCGCAGTTTTGTTTCGACCCTCTTCGTAATT 180 consensus_8474#3 ---------------------------------------------GGTAGCATCTAAAAA 15 consensus_8474#4 ---------------------------------------------------GTAGGAAAC 9 consensus_8474#2 ----------------------------AAAGCAACGTAACAAAGCTTCTCCTTTATATC 32 * * consensus_8474#0 TTGCGTCAGCGGACCTCCA--GAGAAAGCACGTTCTGCAAAG-ACCAGAAGTTTCACTGT 230 consensus_8474#1 TTGCGTCAGCGGACCTCCA--GAGAAAGCACGTTCTGCAAAG-ACCAGAAGTTTCACTGT 237 consensus_8474#3 CAACTGGAAAGGATTGTCA--AGGACTG--AGTTAGATGGAG-AATCCTGGTGGGAGGCC 70 consensus_8474#4 TTAGTATA-TGAATGATTG--TATTGTGGTCTAACGTTAAAGTGACTTGGATGTGATTAT 66 consensus_8474#2 TCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCTT 92 * * * consensus_8474#0 CTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAA---TGAGTCTCCTCGATAGCT 287 consensus_8474#1 CTTGTCTGCTTGTTTTTTGTATCCGACGTTAAATTTTAA---TGAGTCTCCTTGATAGCT 294 consensus_8474#3 TATGCTCCTCCATGAGAGGTAACAGGCGTAAG---TAAG---TAAGTCTTAGTAATATAT 124 consensus_8474#4 GGAACTCGTTTG-GAAACGTATTTTTGGGGAG---TCAA---TAAATCTTCATTGCACCA 119 consensus_8474#2 CATCATATAGTCGGTAAGATCTCCACCAGCAAGGTCCAGACGCAAAATCGCATGA-GGCA 151 * * * * consensus_8474#0 GGAATTCACCTAAATACGTTTTAGCACCTATGGT-------TGATGGGAGTGAACTTGCC 340 consensus_8474#1 GGAATTCACCTAAATACGTTTTAGCACCTATGGT-------TGATGGGAGTGAACTTGCC 347 consensus_8474#3 ATAGATCACC--AGTTCACTTAAATACTTCTGAT-------TA-------TCAGCTTGGT 168 consensus_8474#4 GTCTTTCGTGTTCGCACTTTGTATCGCGGGAAGTG------TAGTGGGTTCCCATTTCTC 173 consensus_8474#2 ATGCATAACCTTCATAGATCGGAACTGTGTGGGTCACACCATCACCCGAGTCCAACACTA 211 * * * * consensus_8474#0 TGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTTTCACACCCATGATTAACTCG 400 consensus_8474#1 TGGAGGATGCTCGGTCGTAAATATGGAGTGCAGCTAACTGTCACACCCATGATTAACTCG 407 consensus_8474#3 TT-----TGTCGAATCGTAGTCAAATCATGTA---AAACCTTATTGCTGTGGATATCCTT 220 consensus_8474#4 TTTACACGAAGTTACTTTACTTACTTACGCCTGTTATCCCTCGTGGAGGAGCACAGGCCA 233 consensus_8474#2 TACCAGTTGTACGACCAGATGCATACAGTGACAACACCGCCTGAATAGCAACATACATAG 271 * * * * * consensus_8474#0 ACTGCATTTCTCATTAACATGAAAT-ACCGCCGCAGTTGCTTGCAGTTCGCCTCAGAAGA 459 consensus_8474#1 ACTGCATTTCTCATTAACATGAAAT-ACCGCCGCAGTTGCTTGCAGTTCGCCTCAGAAGA 466 consensus_8474#3 GGAACCATTCTCAT--ACATCAAGG-ATCG----AACGACCGGACAACCGT-------AA 266 consensus_8474#4 CCCACAAGTGCAATATAAGTGAAAT-AG-------------------------------- 260 consensus_8474#2 CTGGCACATTAAACGTCTCAAACATGATCTGTGTCATCTTCTCACGATTGGCTTTCGGGT 331 * * * * * consensus_8474#0 TCGACCACTTATTGTTCAATTTTGT--GCTAATTCTCCAGATACGTTCGTTAGGTGTGCT 517 consensus_8474#1 TCGACCACTTATTGTTCAATTNTGT--GCTAATTCTCCAGATACGTTCGTTAGGTGTGCT 524 consensus_8474#3 TCATT--CTAATTCCTCAACGGCGT--A-TAATT-TCCAGAAGCCAGAGAAAACTAGTCA 320 consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 TCAGTGGAGCTTCTGTCAACAACACTGGGTGTTCCTCTGGAGCCACTCGCAACTCGGTGT 391 consensus_8474#0 AAGTTGGTGCAGCCCTTCTGCGATGCAGTCGACCTGAATCTCGGTTGCCCCCAAGGAATA 577 consensus_8474#1 AAGTNGGTGCAGCCCTT------------------------------------------- 541 consensus_8474#3 AAA--------------------------------------------------------- 323 consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 AGAATG------------------------------------------------------ 397 consensus_8474#0 GCTAAAAGAGGGCATTATGGTGCGTTTTTGCAAGATGAGTGGAATTCTCTTAAGGATATT 637 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 ATTAGCCGCGCTTCGTTAGAGCTTAATGTTCCCGTCACTTGCAAAATCCGAATCTTTAGT 697 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 GACGTTGAGCGAACTGTTCAGTATGCANAACTTCTCGAAGCTGCAGGGGCTTCTATGCTT 757 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 ACAGTTCACGGACGCACCAGAGAAATGAAAGGTCANAAAACTGGACTAGCTGACTGGAAT 817 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 CAAATTAGGGCAGTAAAAGAAGCCGTAAAAATACCCTGTTATTGCCAATGGGATATTCAG 877 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 TATTTATCAGATGTTCATCAGTGTTTGGACTCACCAAAAGCCGACGCAGTTATGAGTGCA 937 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 GGTTTCTGTATATCCAAAATGTTGTTTATTTCATTTTTTTGAATGCATTTCTTTAGAGCT 997 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 ACAGTCCGCCATATGTNTAGTTCTAGTTTTCGTTAGGATGAAATCGATAACTACTTAATT 1057 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 GGATTTGCAGACCTAGATTTCTTTACCCATTATTTCCTCTGGCTANGATGGTTGNATCAC 1117 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 CGCCATCCCTGTTTCCTATATGTTATGATCTGNGAAAAGTATTCTACCTTAATACTATTT 1177 consensus_8474#1 ------------------------------------------------------------ consensus_8474#3 ------------------------------------------------------------ consensus_8474#4 ------------------------------------------------------------ consensus_8474#2 ------------------------------------------------------------ consensus_8474#0 CTCGATTAATCTGCTGACGCCACTTATCTTTTTCGATTATACATTGAGAATATT 1231 consensus_8474#1 ------------------------------------------------------ consensus_8474#3 ------------------------------------------------------ consensus_8474#4 ------------------------------------------------------ consensus_8474#2 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||