cluster # 8475

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Schistosoma mansoni
cluster # 8475 cluster # 8475 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8475#0 length = 768 sequences # 3
consensus_8475#1 length = 525 sequences # 1

consensus_8475#2 length = 480 sequences # 1
consensus_8475#3 length = 476 sequences # 2

consensusID : consensus_8475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 768
fasta sequence

                              [GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCTAAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTGGATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATACGCAAGTCTCCCTACCAGGCTACCGGATCCTTGATGATATGATTCACTGTTGGTCGGATTAATGAGTACATACTCCATACATTTATTCCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATATACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTCTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACTATTGTTATATGATTTACCATTCCTG-ATTAGGCCCTGTCTATTATTTACTATCTCCCTTATTCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTATGGTGCGATGTGGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT]

[+] EMBL CD078893             [GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCTAAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTGGATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATACGCAAGTCTCCCTACCAGGCTACCGGATCCTTGATGATATGATTCACTGTTGGTCGGATTAATGAGTACATACTCCATACATTTATTCCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATATACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTCTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATANACTATTGTTATATGATTTACCATTCCTG ATTAGGC                                                                                                                                        ]
[-] EMBL CD073352             [                                                                                                                                                                                                                                                                CCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGTTAATATACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTTTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACTATTGTTATATGATTTACCATTCCTGAATTAGGCCCTGTCTATTATTTACTATCTCCCTTATTCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTATGGTGCGATGTGGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT]
[-] EMBL CD141393             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACTATTGTTATATGATTTACCATTCCT                                                                                                                                                 ]




>consensus_8475#0
GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCT
AAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTG
GATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATACGCAAGTCTCC
CTACCAGGCTACCGGATCCTTGATGATATGATTCACTGTTGGTCGGATTAATGAGTACAT
ACTCCATACATTTATTCCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTC
TTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATATACACC
TGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTCTA
ATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGT
AACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAA
TAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACT
ATTGTTATATGATTTACCATTCCTGATTAGGCCCTGTCTATTATTTACTATCTCCCTTAT
TCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTATGGTGCGATGT
GGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT

consensusID : consensus_8475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACTCGACACGCACAACTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGTGTGTGTGTGTGTGCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAAGGATGATGGTGATGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAACGAAAATAATAACGACAGTGAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCTGTTTGCATTATCTCACACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACACTAATTCATACACATACAACCACACACTCACACACTTATCAATACACACACAAACATTGTGAAACACACTCATTCACTCACTCACTCACTCATTCACTCAATCTCTCACTCACTCATTCATTCACTCACTCACTCACTCAATCATCCTATCAATCAATCAATCAACCAATCAATCAATCAA]

[+] EMBL CD067733             [ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACTCGACACGCACAACTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGTGTGTGTGTGTGTGCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAAGGATGATGGTGATGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAACGAAAATAATAACGACAGTGAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCTGTTTGCATTATCTCACACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACACTAATTCATACACATACAACCACACACTCACACACTTATCAATACACACACAAACATTGTGAAACACACTCATTCACTCACTCACTCACTCATTCACTCAATCTCTCACTCACTCATTCATTCACTCACTCACTCACTCAATCATCCTATCAATCAATCAATCAACCAATCAATCAATCAA]




>consensus_8475#1
ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACTCGACACGCACAA
CTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGTGTGTGTGTGTGT
GCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAAGGATGATGGTGA
TGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAACGAAAATAATAACGA
CAGTGAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCTGTTTGCATTATCTCA
CACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACACTAATTCATACACATA
CAACCACACACTCACACACTTATCAATACACACACAAACATTGTGAAACACACTCATTCA
CTCACTCACTCACTCATTCACTCAATCTCTCACTCACTCATTCATTCACTCACTCACTCA
CTCAATCATCCTATCAATCAATCAATCAACCAATCAATCAATCAA

consensusID : consensus_8475#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [ATCGTATAAACTATTCATATTCATGTCCCCCTGATTATGAGCTCTATTTTGAACTATAAACTATTGTTATATGATTTACCATTTCTGAATTATGCCCTATCTATTATTTACTATCTCTCCTATTCACAGACACATTCGGCTTAATCTTGTACAAATGTTGTTTCTTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTCATACCCGCAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCACCGGACACACACCAGCTGCATATAAAAGGTGCTGCAAGCCACTATCACGTTGGCTGTGCAAGGCATGCAGCTCTACAAAGTTTCTGCTAATTCGTGAGGCGATTGAGCTGCCGAATATAGCTAGAAAGATGCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTTTTAGTTTTCGGGAAAGTAGCGAG]

[+] EMBL CD125875             [ATCGTATAAACTATTCATATTCATGTCCCCCTGATTATGAGCTCTATTTTGAACTATAAACTATTGTTATATGATTTACCATTTCTGAATTATGCCCTATCTATTATTTACTATCTCTCCTATTCACAGACACATTCGGCTTAATCTTGTACAAATGTTGTTTCTTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTCATACCCGCAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCACCGGACACACACCAGCTGCATATAAAAGGTGCTGCAAGCCACTATCACGTTGGCTGTGCAAGGCATGCAGCTCTACAAAGTTTCTGCTAATTCGTGAGGCGATTGAGCTGCCGAATATAGCTAGAAAGATGCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTTTTAGTTTTCGGGAAAGTAGCGAG]




>consensus_8475#2
ATCGTATAAACTATTCATATTCATGTCCCCCTGATTATGAGCTCTATTTTGAACTATAAA
CTATTGTTATATGATTTACCATTTCTGAATTATGCCCTATCTATTATTTACTATCTCTCC
TATTCACAGACACATTCGGCTTAATCTTGTACAAATGTTGTTTCTTATTTTATGGTACGA
TGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTCATACCCG
CAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCACCGGACACAC
ACCAGCTGCATATAAAAGGTGCTGCAAGCCACTATCACGTTGGCTGTGCAAGGCATGCAG
CTCTACAAAGTTTCTGCTAATTCGTGAGGCGATTGAGCTGCCGAATATAGCTAGAAAGAT
GCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTTTTAGTTTTCGGGAAAGTAGCGAG

consensusID : consensus_8475#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 476
fasta sequence

                              [GAGTATAAGCAGTAATCCGAAAGATAAGGTTTGAGGATGTTATTTAAGGAGTATAATCCAGTAAATAAATTTGGAAAGACAAAAAAGATAGGAACATGAAGAATTCAAAAGATTAGAATT-TGGGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCATTCGAGGTCTCTAACCATCGGTTGTTATCATCTCGCGAATCCCAACCAGGTAGTCCACACCAACCAACATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTTGTCTGGCCGCCCCTATCTTCCTTCCAACCTACTCCTAAACCTAGTGTTGAATGAATGCATTACATTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTATTTAAATTTAATACTTCCAGAGNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCCTAACCCTTGTCTGTNG]

[+] EMBL CD127788             [GAGTATAAGCAGTAATCCGAAAGATAAGGTTTGAGGATGTTATTTAAGGAGTATAATCCAGTAAATAAATTTGGAAAGACAAAAAAGATAGGAACATGAAGAATTCAAAAGATTAGAATT TGGGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCATTCGAGGTCTCTAACCATCGGTTGTTATCATCTCGCGAATCCCAACCA                                                                                                                                                                                                                                                         ]
[+] EMBL CD198778             [                                                                                                               ATTAGAATTNTGGGAGAACACAAAGAGTGGATGCACCTTCGCCATTGCAAACGATTTTGAGCCATGTCATTCAAGGTCTCTACCCATCGGTTGCTATCATCTCGCGAATCCCAACCAGGTAGTCCACACCAACCAACATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTTGTCTGGCCGCCCCTATCTTCCTTCCAACCTACTCCTAAACCTAGTGTTGAATGAATGCATTACATTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTATTTAAATTTAATACTTCCAGAGNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCCTAACCCTTGTCTGTNG]




>consensus_8475#3
GAGTATAAGCAGTAATCCGAAAGATAAGGTTTGAGGATGTTATTTAAGGAGTATAATCCA
GTAAATAAATTTGGAAAGACAAAAAAGATAGGAACATGAAGAATTCAAAAGATTAGAATT
TGGGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCAT
TCGAGGTCTCTAACCATCGGTTGTTATCATCTCGCGAATCCCAACCAGGTAGTCCACACC
AACCAACATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTTGTCT
GGCCGCCCCTATCTTCCTTCCAACCTACTCCTAAACCTAGTGTTGAATGAATGCATTACA
TTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTATTTAAATTTAATACTTCCAGA
GNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCCTAACCCTTGTCTGTNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8475#0      GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCT 60
consensus_8475#2      ------------------------------------------------------------
consensus_8475#3      ------------------------------------------------------------
consensus_8475#1      ------------------------------------------------------------
                                                                                  

consensus_8475#0      AAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTG 120
consensus_8475#2      ------------------------------------------------------------
consensus_8475#3      ------------------------------------------------------------
consensus_8475#1      ------------------------------------------------------------
                                                                                  

consensus_8475#0      GATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATA-CGCAAGTCTC 179
consensus_8475#2      ------------------------------------ATCGTATAAACTA-TTCA--TATT 21
consensus_8475#3      ------------------------------------------GAGTATA-AGCAGTAATC 17
consensus_8475#1      ------------ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACT 48
                                                                 *   *            

consensus_8475#0      CCTACCAGGCTACCGGATCC---TTGATGATATGATTCACTGTTGGTCGGATTAATGAGT 236
consensus_8475#2      CATGTC-----------CCC---CTGATTATGAGCTCTATT-----TTGAACTATAAACT 62
consensus_8475#3      CGAAAGATA-------AGGT---TTGAGGATGTTATTTAAGGA-GTATAATCCAGTAAAT 66
consensus_8475#1      CGACACGCACAACTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGT 108
                      *                       ***  *                             *

consensus_8475#0      ACATAC-TCCATACATTTATTCCCT-TCTAGTTAGTTTTTGTTGTTGATGCTACTACTTT 294
consensus_8475#2      AT-TGT-TATATG-ATTTACCATTT-CTGAATTATGCCCTATCTATTAT-TTACTATCTC 117
consensus_8475#3      AAAT-T-TGGAAAGACAAAAAAGAT-AGGAAC-ATGAAGAATTCAAAAGATTAGAATTTG 122
consensus_8475#1      GTGTGTGTGTGTGCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAA 168
                         *   *      *   *     *                *     *   *        

consensus_8475#0      TACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATA 354
consensus_8475#2      TCCTATTCACAGACACATTCGGCTTAATCTTG-TACAAA-TGTTGTTTCTTATTTTATGG 175
consensus_8475#3      GGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCATTC 182
consensus_8475#1      GGATGATGGTGATGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAA--C 226
                                                            *   *             *   

consensus_8475#0      TACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTC 414
consensus_8475#2      TACGATGTGGTCAGTTT--GATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTC 233
consensus_8475#3      GAGGTCTCTAACCATC---GGTTGTTAT---CATCTCGCGAATCCCAACCAGG-TAGTCC 235
consensus_8475#1      GAAAATAATAACGACAGT-GAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCT 285
                       *         *          *                           *         

consensus_8475#0      CTTCTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAA-C 473
consensus_8475#2      ATACCCGCAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCAC-C 292
consensus_8475#3      ACACCAACCAA--CATGGCTCAGTCCACTTGTCA---GTGACTTCATGG-ATTTGTGC-C 288
consensus_8475#1      GTTTGCATTATCTCACACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACAC 345
                                                *          *      *     *        *

consensus_8475#0      GAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAAT 533
consensus_8475#2      GGACACACACC-----AGCTGCATATAAAAG-GTGCTGCAAGCCACTATCA-CGTTGGCT 345
consensus_8475#3      ACGTTTTTGTCT----GGCCGCCCCT--ATCTTCCTTCCAACCTACTCCTA-AACCTAGT 341
consensus_8475#1      TAATTCATACACATACAACCACACACTCACACACTTATCAATACACACACA---AACATT 402
                                        *         *           *         *        *

consensus_8475#0      CGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCT 593
consensus_8475#2      GTGCAAGGCATGCAGCTCTACAAAGTT---TCTGCTAATTCGTGAGGCG---ATTGAGCT 399
consensus_8475#3      GTTGAATGAATGCA-TTACATTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTAT 400
consensus_8475#1      GTGAAACACACTCATTCACTCACTCAC---TCACTCATTCACTCAATCTCTCACTCACTC 459
                          **   *   *                 *          * *         *     

consensus_8475#0      ATAAACT--ATTGTTATATGATTTACCATTCCTGATTAGGCC-CTGTCTATTATTTACTA 650
consensus_8475#2      GCCGAAT--ATAGCTAGAAAGATGCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTT 457
consensus_8475#3      TTAAATTTAATACTTCCAGAGNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCC 460
consensus_8475#1      ATTCATTC-ACTCACTCACTCACTCAATCATCCTATCAAT---CAATCAATCAACCAATC 515
                          * *  *       *                         *     *  *       

consensus_8475#0      TCTCCCTTATTCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTAT 710
consensus_8475#2      TTAGTTTTCGGGAAAGTAGCGAG------------------------------------- 480
consensus_8475#3      TAACCCTTGTCTGTNG-------------------------------------------- 476
consensus_8475#1      AATCAATCAA-------------------------------------------------- 525
                            *                                                     

consensus_8475#0      GGTGCGATGTGGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT 768
consensus_8475#2      ----------------------------------------------------------
consensus_8475#3      ----------------------------------------------------------
consensus_8475#1      ----------------------------------------------------------