These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1112 fasta sequence [TTTGAAGAGAAGCCGTTTGCTGCAGCAAGTATCGGTCAGGTTCACAGAGCGACACTTAAAGATGGGAGAATTGTAGCAATCAAAATACAATATCCAGGTATAGCTGATAGCATCGACGCAGATATTAATAATTTGACATCACTTTTAAATCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAAAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTC-AGTTCCAC-AGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTTATTGCGACTGTGTTCGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTGGTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTCTCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTTATTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGTCGGATTAAAACTTATATATCTCTCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTATGAAATAGAAGCATTTTTT] [+] EMBL CD161197 [TTTGAAGAGAAGCCGTTTGCTGCAGCAAGTATCGGTCAGGTTCACAGAGCGACACTTAAAGATGGGAGAATTGTAGCAATCAAAATACAATATCCAGGTATAGCTGATAGCATCGACGCAGATATTAATAATTTGACATCACTTTTAAATCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAAAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAAGTTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTTATTGCGACTGTGTTCGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTGGTCGA ] [+] EMBL CD083077 [ TGTTTTTC AGTTCCAC AGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTTATTGCGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTGGTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTCTCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTTATTTATGAAATATG ] [+] EMBL CD095585 [ CAAACTGATCCAAACTGGTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTCTCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAA ] [-] EMBL CD076651 [ GAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCCCCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGTCGGATTAAAACTTATATATCTCTCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTATGAAATAGAAGCATTTTTT] [+] EMBL SMAA14061 [ TCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGNCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACG ATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAA ] consensusID : consensus_8478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [AGAGAGAGAGACTAGTTCTCTCTCCTCGTGCCGAATTCGGCACAGAGAGAGATGAAGAGAACTAGTCTCGAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGGCCGGATTAAAACTTATATATCCCCCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTTTGAAATA] [+] EMBL AI740337 [AGAGAGAGAGACTAGTTCTCTCTCCTCGTGCCGAATTCGGCACAGAGAGAGATGAAGAGAACTAGTCTCGAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGGCCGGATTAAAACTTATATATCCCCCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTTTGAAATA] consensusID : consensus_8478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAGAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAAGTTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGTGGTCAGTCATAAGCACTATACAACCTGCCTAATACATGCATTGGTTCAAGTTATCTCACCAATATCAGAACAATCAACTAGTCTATGTGGCTCGACACAGCGTGAACCTTGTTGAGATAGGGTTTTCTATTGACTACCTCCAACCACCACCCTGCGGACTAACCTTCGTACATGTGCTTTTAACTTCAATATACTTTTGAAGTATATTTATAAAATTGGTGAACATTTATTGCGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGC] [+] EMBL CD083752 [GCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAGAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAAGTTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGTGGTCAGTCATAAGCACTATACAACCTGCCTAATACATGCATTGGTTCAAGTTATCTCACCAATATCAGAACAATCAACTAGTCTATGTGGCTCGACACAGCGTGAACCTTGTTGAGATAGGGTTTTCTATTGACTACCTCCAACCACCACCCTGCGGACTAACCTTCGTACATGTGCTTTTAACTTCAATATACTTTTGAAGTATATTTATAAAATTGGTGAACATTTATTGCGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8478#0 TTTGAAGAGAAGCCGTTTGCTGCAGCAAGTATCGGTCAGGTTCACAGAGCGACACTTAAA 60 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 GATGGGAGAATTGTAGCAATCAAAATACAATATCCAGGTATAGCTGATAGCATCGACGCA 120 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 GATATTAATAATTTGACATCACTTTTAAATCGTTTTAATATCTTCCCACGTGGTCTATTC 180 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 GCTGAAAAAGCAATTGAAGTAGCTAGAAAAAAATTAAGAGCAGAATGTGATTATCTACTT 240 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 GAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAGTTC 300 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 CACAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTT 360 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 AGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTT 420 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 ATTGCGACTGTGTTCGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTG 480 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 GTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTC 540 consensus_8478#1 ------------------------------------------------------------ consensus_8478#2 ------------------------------------------------------------ consensus_8478#0 TCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGA 600 consensus_8478#1 ------------------------AGAGAGAGAGACTAGTTC--TCTCTCCTCGTGCCGA 34 consensus_8478#2 -------------------------------GCGTTTTAATA--TCTTCCCACGTGGTCT 27 * * * * consensus_8478#0 ACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGA 660 consensus_8478#1 ATTCGGCACAGAGAG-AGATGAAGAGAACTAGTCTCG--AGGCTTTTTGACTGGTTACGA 91 consensus_8478#2 ATTCGCTG-AAAAAGCAATTGAAG-----TAG-CTAGAAAAGAATTAAGAGCAGA-ATGT 79 * * * * * * * * * * * ** ** * * * consensus_8478#0 AACAAAAGTTTTACAACAGGCCCATGTAGATG---CAGTCAGTATATTGGGTGAAGCATT 717 consensus_8478#1 AACAAAAGTTTTACAACAGGCCCATGTAGATG---CAGTCAGTATATTGGGTGAAGCATT 148 consensus_8478#2 GATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGT-TATTAGAGGATGATCC 138 * * ** * * * *** * * ** ***** **** * ** * consensus_8478#0 TGCTTCAGAAGAAAATTTCAATTTTAGTCAAC-AATCAACAACTAAACGTAT--CAGTCA 774 consensus_8478#1 TGCTTCAGAAGAAAATTTCAATTTTAGTCAAC-AATCAACAACTAAACGTAT--CAGTCA 205 consensus_8478#2 TGTTTTTCAAG----TTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCA 194 ** ** *** ** ** ** * * ** ******** ***** ** consensus_8478#0 TTTAATTCCTGTTATGCTTGAGCATAGATTA-------AGTCCACCACCGGAAGAAAGTT 827 consensus_8478#1 TTTAATTCCTGTTATGCTTGAGCATAGATTA-------AGTCCACCACCGGAAGAAAGTT 258 consensus_8478#2 CGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAA 254 *** ** * ** * ***** * * ** **** * * ** consensus_8478#0 ATTCATTG-----CATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGC 882 consensus_8478#1 ATTCATTG-----CATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGC 313 consensus_8478#2 ATTGGTGGTCAGTCATAAGCACTATACAACCTGCCTAATAC-ATGCATTGGTTCAAGTTA 313 *** * * **** * * *** * ** *** * * * * consensus_8478#0 TGTAGTTAATTGTCG-----TCCATTTATTTATGAAATATGGAATAATTACCAGTTCTCC 937 consensus_8478#1 TGTAGTTAATTGTCG-----TCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCC 368 consensus_8478#2 TCTCACCAATATCAGAACAATCAACTAGTCTATGTGGCTCGACACAGC-GTGAACCTTGT 372 * * *** * ** * * * **** * * * * * consensus_8478#0 GATAATAATCCG-TCGGATTAAAACTTATATATCTCTCTCTATATATATAACTTCTTGT- 995 consensus_8478#1 GATAATAATCCGGCCGGATTAAAACTTATATATCCCCCTCTATATATATAACTTCTTGT- 427 consensus_8478#2 TGAGATAGGGTTTTCTATTGACTACCTCCAACCACCACCCTGCGGACTAACCTTCGTACA 432 *** * * * ** * * * * ** * * **** * consensus_8478#0 --TAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAA-TTAACATCGTACTACTG 1052 consensus_8478#1 --TAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAA-TTAACATCGTACTACTG 484 consensus_8478#2 TGTGCTTTTAACTTCAATATACTTTTGAAGTATATTTATAAAATTGGTGAACATTTATTG 492 * ** * * * * * * **** * * * * ** ** ** ** ** consensus_8478#0 TTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTATGAAATAGAAGCATTTTTT 1112 consensus_8478#1 TTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTTTGAAATA------------ 532 consensus_8478#2 CGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGC-------------------- 532 *** ** * ** *** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||