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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1112 fasta sequence
[TTTGAAGAGAAGCCGTTTGCTGCAGCAAGTATCGGTCAGGTTCACAGAGCGACACTTAAAGATGGGAGAATTGTAGCAATCAAAATACAATATCCAGGTATAGCTGATAGCATCGACGCAGATATTAATAATTTGACATCACTTTTAAATCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAAAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTC-AGTTCCAC-AGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTTATTGCGACTGTGTTCGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTGGTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTCTCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTTATTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGTCGGATTAAAACTTATATATCTCTCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTATGAAATAGAAGCATTTTTT]
[+] EMBL CD161197 [TTTGAAGAGAAGCCGTTTGCTGCAGCAAGTATCGGTCAGGTTCACAGAGCGACACTTAAAGATGGGAGAATTGTAGCAATCAAAATACAATATCCAGGTATAGCTGATAGCATCGACGCAGATATTAATAATTTGACATCACTTTTAAATCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAAAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAAGTTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTTATTGCGACTGTGTTCGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTGGTCGA ]
[+] EMBL CD083077 [ TGTTTTTC AGTTCCAC AGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTTATTGCGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTGGTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTCTCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTTATTTATGAAATATG ]
[+] EMBL CD095585 [ CAAACTGATCCAAACTGGTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTCTCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAA ]
[-] EMBL CD076651 [ GAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGAACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCCCCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGTCGGATTAAAACTTATATATCTCTCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTATGAAATAGAAGCATTTTTT]
[+] EMBL SMAA14061 [ TCAAAAGAGTTAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGNCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACG ATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAA ]
consensusID : consensus_8478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[AGAGAGAGAGACTAGTTCTCTCTCCTCGTGCCGAATTCGGCACAGAGAGAGATGAAGAGAACTAGTCTCGAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGGCCGGATTAAAACTTATATATCCCCCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTTTGAAATA]
[+] EMBL AI740337 [AGAGAGAGAGACTAGTTCTCTCTCCTCGTGCCGAATTCGGCACAGAGAGAGATGAAGAGAACTAGTCTCGAGGCTTTTTGACTGGTTACGAAACAAAAGTTTTACAACAGGCCCATGTAGATGCAGTCAGTATATTGGGTGAAGCATTTGCTTCAGAAGAAAATTTCAATTTTAGTCAACAATCAACAACTAAACGTATCAGTCATTTAATTCCTGTTATGCTTGAGCATAGATTAAGTCCACCACCGGAAGAAAGTTATTCATTGCATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGCTGTAGTTAATTGTCGTCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCCGATAATAATCCGGCCGGATTAAAACTTATATATCCCCCTCTATATATATAACTTCTTGTTAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAATTAACATCGTACTACTGTTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTTTGAAATA]
consensusID : consensus_8478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[GCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAGAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAAGTTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGTGGTCAGTCATAAGCACTATACAACCTGCCTAATACATGCATTGGTTCAAGTTATCTCACCAATATCAGAACAATCAACTAGTCTATGTGGCTCGACACAGCGTGAACCTTGTTGAGATAGGGTTTTCTATTGACTACCTCCAACCACCACCCTGCGGACTAACCTTCGTACATGTGCTTTTAACTTCAATATACTTTTGAAGTATATTTATAAAATTGGTGAACATTTATTGCGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGC]
[+] EMBL CD083752 [GCGTTTTAATATCTTCCCACGTGGTCTATTCGCTGAAAAAGCAATTGAAGTAGCTAGAAAAGAATTAAGAGCAGAATGTGATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAAGTTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGTGGTCAGTCATAAGCACTATACAACCTGCCTAATACATGCATTGGTTCAAGTTATCTCACCAATATCAGAACAATCAACTAGTCTATGTGGCTCGACACAGCGTGAACCTTGTTGAGATAGGGTTTTCTATTGACTACCTCCAACCACCACCCTGCGGACTAACCTTCGTACATGTGCTTTTAACTTCAATATACTTTTGAAGTATATTTATAAAATTGGTGAACATTTATTGCGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8478#0 TTTGAAGAGAAGCCGTTTGCTGCAGCAAGTATCGGTCAGGTTCACAGAGCGACACTTAAA 60
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 GATGGGAGAATTGTAGCAATCAAAATACAATATCCAGGTATAGCTGATAGCATCGACGCA 120
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 GATATTAATAATTTGACATCACTTTTAAATCGTTTTAATATCTTCCCACGTGGTCTATTC 180
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 GCTGAAAAAGCAATTGAAGTAGCTAGAAAAAAATTAAGAGCAGAATGTGATTATCTACTT 240
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 GAAGCGGCTTACGGTAAACGTTTCACTCAGTTATTAGAGGATGATCCTGTTTTTCAGTTC 300
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 CACAGTAATTGATGAACTAACAACTAGTCGTATATTGACCACGGAATATATGAATGGGTT 360
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 AGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAAATTGGATTGGTGAACATTT 420
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 ATTGCGACTGTGTTCGAAAGAGTTATTTGTATTTCATGTAATGCAAACTGATCCAAACTG 480
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 GTCGAATTTCTTGTACAACCCTCAAACAGGCAAAATTGTTTTATTGGATTTTGGAGCTTC 540
consensus_8478#1 ------------------------------------------------------------
consensus_8478#2 ------------------------------------------------------------
consensus_8478#0 TCGAGAATACAGCAAATCCTTTGTCGACACATATATTCGTCTAATTCATGCTTCAGCGGA 600
consensus_8478#1 ------------------------AGAGAGAGAGACTAGTTC--TCTCTCCTCGTGCCGA 34
consensus_8478#2 -------------------------------GCGTTTTAATA--TCTTCCCACGTGGTCT 27
* * * *
consensus_8478#0 ACATGATGAAGAAACTATACTTAAACTATCAAAAGAGTTAGGCTTTTTGACTGGTTACGA 660
consensus_8478#1 ATTCGGCACAGAGAG-AGATGAAGAGAACTAGTCTCG--AGGCTTTTTGACTGGTTACGA 91
consensus_8478#2 ATTCGCTG-AAAAAGCAATTGAAG-----TAG-CTAGAAAAGAATTAAGAGCAGA-ATGT 79
* * * * * * * * * * * ** ** * * *
consensus_8478#0 AACAAAAGTTTTACAACAGGCCCATGTAGATG---CAGTCAGTATATTGGGTGAAGCATT 717
consensus_8478#1 AACAAAAGTTTTACAACAGGCCCATGTAGATG---CAGTCAGTATATTGGGTGAAGCATT 148
consensus_8478#2 GATTATCTACTTGAAGCGGCTTACGGTAAACGTTTCACTCAGT-TATTAGAGGATGATCC 138
* * ** * * * *** * * ** ***** **** * ** *
consensus_8478#0 TGCTTCAGAAGAAAATTTCAATTTTAGTCAAC-AATCAACAACTAAACGTAT--CAGTCA 774
consensus_8478#1 TGCTTCAGAAGAAAATTTCAATTTTAGTCAAC-AATCAACAACTAAACGTAT--CAGTCA 205
consensus_8478#2 TGTTTTTCAAG----TTCCACAAGTAATTGATGAACTAACAACTAGTCGTATATTGACCA 194
** ** *** ** ** ** * * ** ******** ***** **
consensus_8478#0 TTTAATTCCTGTTATGCTTGAGCATAGATTA-------AGTCCACCACCGGAAGAAAGTT 827
consensus_8478#1 TTTAATTCCTGTTATGCTTGAGCATAGATTA-------AGTCCACCACCGGAAGAAAGTT 258
consensus_8478#2 CGGAATATATGAATGGGTTAGTCTTAGATGATTGTATTAATCTTCCACAAAATGTGAGAA 254
*** ** * ** * ***** * * ** **** * * **
consensus_8478#0 ATTCATTG-----CATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGC 882
consensus_8478#1 ATTCATTG-----CATAGAAAAATGTCTGGTTGCTTTTTATTATGTAGTAAATTGAAAGC 313
consensus_8478#2 ATTGGTGGTCAGTCATAAGCACTATACAACCTGCCTAATAC-ATGCATTGGTTCAAGTTA 313
*** * * **** * * *** * ** *** * * * *
consensus_8478#0 TGTAGTTAATTGTCG-----TCCATTTATTTATGAAATATGGAATAATTACCAGTTCTCC 937
consensus_8478#1 TGTAGTTAATTGTCG-----TCCATTATTTTATGAAATATGGAATAATTACCAGTTCTCC 368
consensus_8478#2 TCTCACCAATATCAGAACAATCAACTAGTCTATGTGGCTCGACACAGC-GTGAACCTTGT 372
* * *** * ** * * * **** * * * * *
consensus_8478#0 GATAATAATCCG-TCGGATTAAAACTTATATATCTCTCTCTATATATATAACTTCTTGT- 995
consensus_8478#1 GATAATAATCCGGCCGGATTAAAACTTATATATCCCCCTCTATATATATAACTTCTTGT- 427
consensus_8478#2 TGAGATAGGGTTTTCTATTGACTACCTCCAACCACCACCCTGCGGACTAACCTTCGTACA 432
*** * * * ** * * * * ** * * **** *
consensus_8478#0 --TAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAA-TTAACATCGTACTACTG 1052
consensus_8478#1 --TAATTATCATTCCGACTTGTTTTTAATCTTTGATGATTAA-TTAACATCGTACTACTG 484
consensus_8478#2 TGTGCTTTTAACTTCAATATACTTTTGAAGTATATTTATAAAATTGGTGAACATTTATTG 492
* ** * * * * * * **** * * * * ** ** ** ** **
consensus_8478#0 TTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTATGAAATAGAAGCATTTTTT 1112
consensus_8478#1 TTACTACTCTTATAGTCCTTTTTTAATGTTAGCAGATTTTTTGAAATA------------ 532
consensus_8478#2 CGACTGTGTTTGAAAGAGTTATTTGTATTTCATGTAATGC-------------------- 532
*** ** * ** *** ** * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||