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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 770 fasta sequence
[CCAGGCCAGAATTCGGTCCGAGGGGAGAACACGTTTATATANTCTCCTGAACAACTTCAATGCCATCTTTTAACACTCTCAGGAATCCCATCATCATTTTTCACAACATTATTGAATTTGGATTTTATTCGACAACGTAATCATCAAGCTGGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATTATCAACTAAG-CAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGG-ATAAAGATTTCGAACACGCTGTTGAACCTATACAT-GGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTACCCTAACCAGACAAAACATTCTATGATCATGTAACCACTCCCTACTAAAAACTTCAGGGATTCCGCGATATATAGTGAGCGGTACAACCGAATCGAGATTCGATCTGCCTGCATTTGCGTGGAAATCTTGTCGCACAGATAGTGTCTTTTACTCCGGCGTACCCAGCACAGACTATTTGTTAATGTAACCACACCCAGATGAATAGAGTATGTACCAAGATGGGGAAAAGATCAGGGGGAAGTGGCTCAC]
[+] EMBL CD077749 [CCAGGCCAGAATTCGGTCCGAGGGGAGAACACGTTTATATANTCTCCTGAACAACTTCAATGCCATCTTTTAACACTCTCAGGAATCCCATCATCATTTTTCACAACATTATTGAATTTGGATTTTATTCGACAACGTAATCATCAAGCTGGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACANATAAAGGCTTAGTATCGGCT ]
[+] EMBL CD111852 [ TTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATTATCAACTAAG CAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGG ATAAAGATTTCGAACACGCTG ]
[+] EMBL AI413084 [ AGTNGCAGAADACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATTATCAACTAAG CAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGG ATAAAGATTTCGAACACGCTGTTGAACCTATACAT GGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTACCCTAACCAGACAAAACATTCTATGATCATGTAACCACTCCCTACTAAAAACTTCAGGGATTCCGCGATATATAGTGAGCGGTACAACCGAATCGAGATTCGATCTGCCTGCATTTGCGTGGAAATCTTGTCGCACAGATAGTGTCTTTTACTCCGGCGTACCCAGCACAGACTATTTGTTAATGTAACCACACCCAGATGAATAGAGTATGTACCAAGATGGGGAAAAGATCAGGGGGAAGTGGCTCAC]
[+] EMBL AI374502 [ CCTCATGAATCTACCCTTCTTTCTTCCTGTTGTTGATACAAATAAAGGCTTAGTATCTCCTGATGATGATTTTGGTAATGGATTATCAACTAAGCCAACAGTTCATTAATAAAACAACGATTCGTAAACGGCGTGGGTTGTTGGAATAAAGATTTCGACCACGCTGTTGAACCTATACATGGGCTTATCTATGAGACTTATTCGAGCG AATCAAATG TGAATTCGATC AATTTCT ]
consensusID : consensus_8479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 592 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCNGCTGATGATGATTTTGGTAATGGATTTATCAACTAAGCAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAGATTTCGAACACGCTGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAATTAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTTGCAACAGCATAGTGACATTTTATTCCGACG-ACTCATGCACAGAACAATTTGTTAAATGT]
[+] EMBL CD080565 [CTCGAGGCCAAAAATTCGGCACGAGGAAACTTTTGAATAATAATACTGCTACTCATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAATAAAGGCTTAGTATCNGCTGATGATGATTTTGGTAATGGATTTATCAACTAAGCAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAATTTTCAAAC CGCTGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAA ]
[-] EMBL CD111575 [ GTATCGGCTGATGATGATTTTGGTAATGGA TTATCAACTAAGCAACAGTTCATTAATAAAACAACGAATCGTAAACGGCGTGGG GTTGGATAAAGATTTCGAACACGCTGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAATTAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTTGCAACAGCATAGTGACATTTTATTCCGACG ACTCATGCACAGAACAATTTGTTAAATGT]
[-] EMBL CD111307 [ TGGATAAAGATTTCGAACACGCTGTTGAACCTATACATGGCTNATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATTCGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCGTCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAACATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAATTAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTTGCAACAGCATAGTGACATTTTATTCCGACGTACTCATGCACAGAACAATTTGTTAAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8479#0 CCAGGCCAGAATTCGGTCCGAGGGGAGAACACGTTTATATANTCTCCTGAACAACTTCAA 60
consensus_8479#1 ------------------------------------------------------------
consensus_8479#0 TGCCATCTTTTAACACTCTCAGGAATCCCATCATCATTTTTCACAACATTATTGAATTTG 120
consensus_8479#1 ------------------------------------------------------------
consensus_8479#0 GATTTTATTCGACAACGTAATCATCAAGCTGGGAAACTTTTGAATAATAATACTGCTACT 180
consensus_8479#1 -------CTCGAGGCCAAAAATTCGGCACGAGGAAACTTTTGAATAATAATACTGCTACT 53
**** * ** * *****************************
consensus_8479#0 CATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAAT 240
consensus_8479#1 CATTCAGTCGCAGAAAACCTCATGAATCTACCCTTCTTTCTGCCTGTTGTTGAGACAAAT 113
************************************************************
consensus_8479#0 AAAGGCTTAGTATCGGCTGATGATGATTTTGGTAATGGATT-ATCAACTAAGCAACAGTT 299
consensus_8479#1 AAAGGCTTAGTATCNGCTGATGATGATTTTGGTAATGGATTTATCAACTAAGCAACAGTT 173
************** ************************** ******************
consensus_8479#0 CATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAGATTTCGAACACGC 359
consensus_8479#1 CATTAATAAAACAACGAATCGTAAACGGCGTGGGTTGTTGGATAAAGATTTCGAACACGC 233
************************************************************
consensus_8479#0 TGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATT 419
consensus_8479#1 TGTTGAACCTATACATGGCTTATCTATGAGACTTATTCGAGCGAAATCAAATGATGAATT 293
************************************************************
consensus_8479#0 CGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCG 479
consensus_8479#1 CGATCAAATTTCTCACGTCTTGAAATCAGTTGGGACAAGTGGATTAGATTTGGAAATTCG 353
************************************************************
consensus_8479#0 TCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTA-CCCTAACCAGACAAAA-C 537
consensus_8479#1 TCTGCTTGTTCCATCAGCTGAAGACGAAATGGCTTGTTGTAACCCTAACCAGACAAAAAC 413
***************************************** **************** *
consensus_8479#0 ATTCTATGATCATGTAACCACTCCCTACTAAAAACTTCAGGGATTCCG-CGATATATAGT 596
consensus_8479#1 ATTCTATGATCATGTAACCAATCCTTACTTAAAACTTCATGGATTTCTTCGATATATAAT 473
******************** *** **** ********* ***** * ********* *
consensus_8479#0 GAGCGG--TACAACCGAATCGAGATT-CGATCT-GCCTGCATTTGCGTGGAAATCTTGTC 652
consensus_8479#1 TAATCGGTTTCAATCGAATCGAGATTTCGATCTTGCTTGCATTTGCTTGGAAATCTTGTT 533
* * * *** ************ ****** ** ********* ************
consensus_8479#0 GCA-CAG-ATAGTGTC-TTTTACTCCGGCGTACCCAGCACAGA-CTATTTGTTAA-TGTA 707
consensus_8479#1 GCAACAGCATAGTGACATTTTATTCCGACGACTCATGCACAGAACAATTTGTTAAATGT- 592
*** *** ****** * ***** **** ** * ******* * ********* ***
consensus_8479#0 ACCACACCCAGATGAATAGAGTATGTACCAAGATGGGGAAAAGATCAGGGGGAAGTGGCT 767
consensus_8479#1 ------------------------------------------------------------
consensus_8479#0 CAC 770
consensus_8479#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||