cluster # 8483

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Schistosoma mansoni
cluster # 8483 cluster # 8483 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8483#0 length = 352 sequences # 6

consensus_8483#1 length = 142 sequences # 1

consensusID : consensus_8483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 352
fasta sequence

                              [CGGGAACAAGACGTTACAATAGTATTGCTGTTTTAAGGTGGTTACTAACACGTAATAAACAGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCCAAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGACCATAAAAAGAAGTAAAAGTCATGG-AATTAATAAGAATGAGACAGTTTCCAATTTATTTCCTTAGTTATTTCCTCATTAAAGTTAAATGTTATTAAAATACATTCATTTAAAT]

[-] EMBL BG932309             [CGGGAACAAGACGTTACAATAGTATTGCTGTTTTAAGGTGGTTACTAACACGTAATAAACAGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCCAAAGAACACAAAAAAAATAAATCGCACCATAAGGAGAAGCgt                                                                                                                                                                                               ]
[-] EMBL CD072602             [         GACGTTACAATAGTATTGCTGTTTTAAGGTGGTTACTAACACGTAATAAACAGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCCAAAGAACACAAAAAAGATAAATCGCACCAT                                                                                                                                                                                                           ]
[+] EMBL AW497762             [                          GCTGTTTTAAGGTGGTTACTAACACGTAATAAACAGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCCAAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGACCATAAAAAGGAGTAAAAGTCATGG AATTAATAAGAATGAGGCTGTTTCTAATTTATTTCCTTAGTT CTTCCCCATTAAAGTTAAt                          ]
[+] EMBL AA559535             [                                   AGGTGGTTACTAACACGTAATAAACAGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACNACGGTCATGGTCCAAAATCCAAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGACCATAAAAAGAAGTAAAAGTCATGGAAATTAATAAGAATGAGACAGTTTCCAATTTATTTCCTTAGTTATTTCCTCATTAAAGTT                             ]
[+] EMBL SMAA18478            [                                        GTTACTAACACGTAATAAACAGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCCAAAGAACACAAAAAAGATAAATC   CCATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGACCATAAAAAGAAGTAAAAGTCATGG AATTAATAAGAATGAGACAGTTTCCAATTTATTTCCTTAGTTATTTCCTCATTAAAGTTAAATGTTATTAAAATACATTCATTTAAAT]
[+] EMBL AW497767             [                                                                                                                                                                                        GATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGACCATAAAAAGAAGTAAAAGTCATGG AATTAATAAGAATGAGACAGTTTCCAATTTATTTCCTTAGTTATTTCCTCATTAAAGTTAAATGTTATTAAAATACATTCATTTA   ]




>consensus_8483#0
CGGGAACAAGACGTTACAATAGTATTGCTGTTTTAAGGTGGTTACTAACACGTAATAAAC
AGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCC
AAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCAT
CACAGATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGAC
CATAAAAAGAAGTAAAAGTCATGGAATTAATAAGAATGAGACAGTTTCCAATTTATTTCC
TTAGTTATTTCCTCATTAAAGTTAAATGTTATTAAAATACATTCATTTAAAT

consensusID : consensus_8483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 142
fasta sequence

                              [TGATTAACGTTTGACTGATAGCATTTACGCAGTCGAATCACTAATCGAACAAATTATAATTATGTGGACATTACACGTTTTGATATTCCAAACTCACCGGATTATTTTTATTATCCAATGACGTAAATTATTCCTGATCCCG]

[+] EMBL CD062527             [TGATTAACGTTTGACTGATAGCATTTACGCAGTCGAATCACTAATCGAACAAATTATAATTATGTGGACATTACACGTTTTGATATTCCAAACTCACCGGATTATTTTTATTATCCAATGACGTAAATTATTCCTGATCCCG]




>consensus_8483#1
TGATTAACGTTTGACTGATAGCATTTACGCAGTCGAATCACTAATCGAACAAATTATAAT
TATGTGGACATTACACGTTTTGATATTCCAAACTCACCGGATTATTTTTATTATCCAATG
ACGTAAATTATTCCTGATCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8483#0      CGGGAACAAGACGTTACAATAGTATTGCTGTTTTAAGGTGGTTACTAACACGTAATAAAC 60
consensus_8483#1      ------------------------------------------------------------
                                                                                  

consensus_8483#0      AGAGACTAACCACAGTTCAACGGAAAAATGGGAAACGACGACGGTCATGGTCCAAAATCC 120
consensus_8483#1      ------------------------------------------------------------
                                                                                  

consensus_8483#0      AAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCAT 180
consensus_8483#1      ------------------------------------------------------------
                                                                                  

consensus_8483#0      CACAGATCGGGTTCAAAACATCGTTCTGGGTCATCGTCTTCTTCATCATCGGATTCCGAC 240
consensus_8483#1      --------------TGATTAACGTT-TGACTGATAGCATT-TACGCAGTCGAATC---AC 41
                                      *  * **** **  * ** *  ** * *    *** **    **

consensus_8483#0      CATAAAAAGAAGTAAAAGTCATGGAATTAATAAGAATGAGACAGTTTCCAATTTATTTCC 300
consensus_8483#1      TAATCGAACAAATTATAATTATGTGGACATTACACGTTTTGATATTCCAAACTCACCGGA 101
                       *    ** ** * * * * ***     * **    *       ** * ** * *     

consensus_8483#0      TTAGTTAT-TTCCTCATTAAAGTTAAATGTTATTAAAATACATTCATTTAAAT 352
consensus_8483#1      TTATTTTTATTATCCAATGACGTAAATTATTCCTGATCCCG------------ 142
                      *** ** * **   ** * * ** ** * **  * *