These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence [TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACCAACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATGGAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATAATTCATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGATGATGATGAGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAAGTAGATGAATCTGTATAATAATGATATGG] [+] EMBL CD077149 [TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACCAACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATGGAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATAATTCATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGATGATGATGAGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAAGTAGATGAATCTGTATAATAATGATATGG] [+] EMBL CD077134 [TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACCAACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATGGAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATA ] consensusID : consensus_8488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTATAACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGTGACCTGCAGGCCATCTGCAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA] [+] EMBL CD095083 [CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTATAACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGTGACCTGCAGGCCATCTGCAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA] consensusID : consensus_8488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 288 fasta sequence [ATCGGAAAGTTTGGCATTCATAGTATCCTTCAGCTTCGGGCGAACATCGCGCATGATGCTGCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTGGATATTTTCCCCCACCCTTGCCAATCATAATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATGGAAACATCGGTTAGATCAACGGAAGAACGCTGGAATTTCGACGGAGGACCATCTTGGTTGTCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAATGGCTACCAGGC] [-] EMBL CD097893 [ATCGGAAAGTTTGGCATTCATAGTATCCTTCAGCTTCGGGCGAACATCGCGCATGATGCTGCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTGGATATTTTCCCCCACCCTTGCCAATCATAATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATGGAAACATCGGTTAGATCAACGGAAGAACGCTGGAATTTCGACGGAGGACCATCTTGGTTGTCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAATGGCTACCAGGC] [+] EMBL CD159825 [ AACATCGCGCATGATGCTGCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTTGATATTTT CCCCACCCTTCCCAATCATTATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATGGAAACAT ] consensusID : consensus_8488#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [AGTCGGCGCGGGAATTCGATTACCGACTGGACAGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATATGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCC] [+] EMBL CD183713 [AGTCGGCGCGGGAATTCGATTACCGACTGGACAGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATATGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCC] consensusID : consensus_8488#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACTGCGACCCTCCTACTCGTTGCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGT] [+] EMBL CD061511 [TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACTGCGACCCTCCTACTCGTTGCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8488#3 --------------AGTCGGCGCGGGAATT---CGATTACCGACTGGA-CAGCGCCTGTG 42 consensus_8488#4 --TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTG 58 consensus_8488#2 --ATCGGAAAGTTTGGCATTCATAG-TATCCTTCAGCTTCGGGCGAACATCGCGCATGAT 57 consensus_8488#0 TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACC 60 consensus_8488#1 -CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCG 59 * * consensus_8488#3 GTTGCT--T-CACC-TA-G-GCTCACG---CCTGAGGCTTCCCG-CTAGCCACAGCGACC 92 consensus_8488#4 GTTGCT--T-CACC-TA-G-GCTCACG---CCTGAGGCTTCCCG-CTAGCCACTGCGACC 108 consensus_8488#2 GCTGCAGAT-GGCC-TGCA-GGTCACC---TTCGATAGTCATTATCCTGTGACCGT-ATT 110 consensus_8488#0 AACATATATATATA-TATACACTCACA---AAAGAGACTTACTTACTTACGCCTGTTACC 116 consensus_8488#1 ATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACC 119 * ** ** * consensus_8488#3 CTCCT-----ACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACAC 147 consensus_8488#4 CTCCT-----ACTCGTTGCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACAC 163 consensus_8488#2 TTTTG-----GATATTTTCCCCCACCCT-TGCCAATCATAATCCCTGCAGCCCTCCCAGG 164 consensus_8488#0 CCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAAT 176 consensus_8488#1 CAGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTAT 179 * ** consensus_8488#3 AGCATATGCCTAGCTTACAGCAACGGTCCGG----TATA-GGTCCA--ACGCTCGAGCGC 200 consensus_8488#4 AGCATAGGCCTAGCTTACAGCAACGGTCCGG----T------------------------ 195 consensus_8488#2 AATAAGAAATCTGATGGAAACATCGGTTAGA----TCAACGGAAGA--ACGCTGGAATTT 218 consensus_8488#0 AATGGAAACCATAAACAAAAAAATGAAAGGAATA-TAAATGAGGGA--ACAATAAAAACC 233 consensus_8488#1 AACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGT 239 * * consensus_8488#3 C----------------------------------------------------------- 201 consensus_8488#4 ------------------------------------------------------------ consensus_8488#2 CGACGGAGGACCA-TCTTGGTTGTCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAAT 277 consensus_8488#0 AATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTAT 293 consensus_8488#1 GACCTGCAGGCCATCTGCAGC-ATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAAT 298 consensus_8488#3 ------------------------------------------------------------ consensus_8488#4 ------------------------------------------------------------ consensus_8488#2 GGCTACCAGGC------------------------------------------------- 288 consensus_8488#0 CATAATTCATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGAT 353 consensus_8488#1 GAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA------------------ 340 consensus_8488#3 ------------------------------------------------------------ consensus_8488#4 ------------------------------------------------------------ consensus_8488#2 ------------------------------------------------------------ consensus_8488#0 GATGATGAGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAA 413 consensus_8488#1 ------------------------------------------------------------ consensus_8488#3 ----------------------------- consensus_8488#4 ----------------------------- consensus_8488#2 ----------------------------- consensus_8488#0 GTAGATGAATCTGTATAATAATGATATGG 442 consensus_8488#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||