cluster # 8489

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Schistosoma mansoni
cluster # 8489 cluster # 8489 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8489#0 length = 517 sequences # 6

consensus_8489#1 length = 457 sequences # 1

consensusID : consensus_8489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 517
fasta sequence

                              [AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA-TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA-GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAAAACTCGACAAATAAACAAGAAATTGCAAGCCACGGTAATGCCACAAATAAAAGACACCATAATACAAACAGAACTAGAAGGAACCTCTGTGGTTCCAAC]

[+] EMBL CD187891             [AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCACATGAATGTACAGACACAATCAGGAATAATT AAAAAGAACAAGGAATACA                                                                                                                                                                  ]
[-] EMBL CD060552             [                               TCTGGAATAATTGGACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAACACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACCGTAACTCATGAATTTAAAACTCGACAAATAAACAAGAAATTG                                                                          ]
[+] EMBL CD187730             [                                             ACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATTTGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATATTACACAGGATGAGGCAGTTCAAA GAAGAATGATTAATATAGATATTCAAGCAGATGCTCGACATGCACTGGCTTATCGTTATGTCCAAACATATGAAAGTCAACTGATACATATCAAGCATAAACACCAtaca                                                                                                                                                                                                                 ]
[+] EMBL CD187642             [                                              CCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTGTAAACGCAATCAGGAATCATTTGGCAATCACAAGGATTGCCAACAAAATTAAACCATTAACCGGTCGGAATTGAC AAAGAAAATTGTACACAGTATGAGGCAGTTCAAAGGAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGGAGAGGTTCAAACCACA                                                                                                                                         ]
[+] EMBL CD184481             [                                                                                                                     CACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAACCACAGTGAACGCAACCGACGTTACTGTAACTCATGAATTTAAAACTCGACAAATAAACAAGACATTGCAAGCCACGG                                                                ]
[-] EMBL CD065389             [                                                                                                                                                                                                                           acccCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAGCCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAAAACTCGGCAAATAAACAAGAAATTGCAAGCAACCATAATGCCACAAATAAAAGACACCATAATACAAACAGAACTAGAAGGAACCTCTGTGGTTCCAAC]




>consensus_8489#0
AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACG
CGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCAC
AGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAATGACAAAAGAAAATAGTACAC
AGTATGAGGCAGTTCAAAGAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATG
CAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAAT
ACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACAC
GTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAAAA
CTCGACAAATAAACAAGAAATTGCAAGCCACGGTAATGCCACAAATAAAAGACACCATAA
TACAAACAGAACTAGAAGGAACCTCTGTGGTTCCAAC

consensusID : consensus_8489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [CTTGACACGATAAGATGAGATATAACTTTTCGCCAAGTCTATGGATACTAGTTTATGTGATCTTCGTTCGGCTTTACAAACGTTTCAACTGCTATGACTATTGCGAAAGGCCTGATTTGTATAACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTATTCATTATTAATATTCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGAACATTTTATAAGATATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTCACGTACGACGAATTCAATCTTACCATGATGCAGAACTTGTATATGACGTTGGATACTCCCACATTGGGAATATTTATAATTACGTAGTAAACTATAACAATTTGGAAACTTATGTTATTAGAGGGAAGGATTATTGGGAGTCAAAAGGAATTATTCGACAAACGTTTATGGTACAGATTC]

[+] EMBL CD098181             [CTTGACACGATAAGATGAGATATAACTTTTCGCCAAGTCTATGGATACTAGTTTATGTGATCTTCGTTCGGCTTTACAAACGTTTCAACTGCTATGACTATTGCGAAAGGCCTGATTTGTATAACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTATTCATTATTAATATTCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGAACATTTTATAAGATATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTCACGTACGACGAATTCAATCTTACCATGATGCAGAACTTGTATATGACGTTGGATACTCCCACATTGGGAATATTTATAATTACGTAGTAAACTATAACAATTTGGAAACTTATGTTATTAGAGGGAAGGATTATTGGGAGTCAAAAGGAATTATTCGACAAACGTTTATGGTACAGATTC]




>consensus_8489#1
CTTGACACGATAAGATGAGATATAACTTTTCGCCAAGTCTATGGATACTAGTTTATGTGA
TCTTCGTTCGGCTTTACAAACGTTTCAACTGCTATGACTATTGCGAAAGGCCTGATTTGT
ATAACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTATTCATTATTAAT
ATTCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGAACATTTTATAAGAT
ATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTCACGTACGACGAATTCAATCTTAC
CATGATGCAGAACTTGTATATGACGTTGGATACTCCCACATTGGGAATATTTATAATTAC
GTAGTAAACTATAACAATTTGGAAACTTATGTTATTAGAGGGAAGGATTATTGGGAGTCA
AAAGGAATTATTCGACAAACGTTTATGGTACAGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8489#0      AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACG 60
consensus_8489#1      -------------------------------CTTGACACGATAAG---ATGAGATATAAC 26
                                                       **  *  **  *   ** ***  **  

consensus_8489#0      CGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCAC 120
consensus_8489#1      TTTTCGCCAAGTCTATGGATACTAGTTT----ATGTGATC----TTCGTTCG-GCTTTAC 77
                             *** ****     * *  * *    * *  ***     ** ** *    * **

consensus_8489#0      AGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAATGACAAAAGAAAATAGTACAC 180
consensus_8489#1      AAACGTTTCAACTGCTAT--GACTAT------TGCGAAAGGCCT-----GATTTGTATA- 123
                      *    ** **      **  *** **      * ** ** * *       * * *** * 

consensus_8489#0      AGTATGAGGCAGTT-CAAAGAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACAT 239
consensus_8489#1      ACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTA-TTCATTATTAATAT 182
                      * ******   **    *   * *******  *********** *    **  *  * **

consensus_8489#0      GCAGTGGCTTATCGTTATGTCCAAACA-GATGAAAGTCAACTGATACATATCAAGCAGAA 298
consensus_8489#1      TCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGA-ACATTTTATA-AGAT 240
                       ** **     **    *  **** *   *  *    * * *** **** * *   *** 

consensus_8489#0      ATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAAC 358
consensus_8489#1      ATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTC----ACGTACGACGAATTCAATC 296
                      ** *    ** **   *    *          ** *     * * ** * **** *** *

consensus_8489#0      ACGTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAA 418
consensus_8489#1      TTACCATGATGCAGAACTTGTATATGACGT--TGGATACTCCCACATTGGGAATATTTAT 354
                           * ** *   **     *    ****    **   * *   *        ***** 

consensus_8489#0      AACTCGACAAATAA--ACAAGAAATTGCAAGCCACGGTAATGCCACAAATAAAAGACACC 476
consensus_8489#1      AATTACGTAGTAAACTATAACAATTTGGAAACTT--ATGTTATTAGAGGGAAGGATTATT 412
                      ** *    *   **  * ** ** *** ** *     *  *   * *   **     *  

consensus_8489#0      ATAATACAAACAGAACTAG--AAGGAACCTCTGTGGTTCCAAC-- 517
consensus_8489#1      GGGAGTCAAAAGGAATTATTCGACAAACGTTTATGGTACAGATTC 457
                         *  ****  *** **    *  *** * * **** *  *