These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 517 fasta sequence [AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA-TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA-GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAAAACTCGACAAATAAACAAGAAATTGCAAGCCACGGTAATGCCACAAATAAAAGACACCATAATACAAACAGAACTAGAAGGAACCTCTGTGGTTCCAAC] [+] EMBL CD187891 [AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCACATGAATGTACAGACACAATCAGGAATAATT AAAAAGAACAAGGAATACA ] [-] EMBL CD060552 [ TCTGGAATAATTGGACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAACACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACCGTAACTCATGAATTTAAAACTCGACAAATAAACAAGAAATTG ] [+] EMBL CD187730 [ ACCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATTTGGAATCATTTGCAAATCACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATATTACACAGGATGAGGCAGTTCAAA GAAGAATGATTAATATAGATATTCAAGCAGATGCTCGACATGCACTGGCTTATCGTTATGTCCAAACATATGAAAGTCAACTGATACATATCAAGCATAAACACCAtaca ] [+] EMBL CD187642 [ CCATCAGACCTACGCGCATATCAAATCTAAAACAATTGATGTGTAAACGCAATCAGGAATCATTTGGCAATCACAAGGATTGCCAACAAAATTAAACCATTAACCGGTCGGAATTGAC AAAGAAAATTGTACACAGTATGAGGCAGTTCAAAGGAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGGAGAGGTTCAAACCACA ] [+] EMBL CD184481 [ CACAGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAA TGACAAAAGAAAATAGTACACAGTATGAGGCAGTTCAAA GAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAACCACAGTGAACGCAACCGACGTTACTGTAACTCATGAATTTAAAACTCGACAAATAAACAAGACATTGCAAGCCACGG ] [-] EMBL CD065389 [ acccCAAGCAGATGCTCGACATGCAGTGGCTTATCGTTATGTCCAAACAGATGAAAGTCAACTGATACATATCAAGCAGAAATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAACACGTGAAGAGGTTCAAGCCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAAAACTCGGCAAATAAACAAGAAATTGCAAGCAACCATAATGCCACAAATAAAAGACACCATAATACAAACAGAACTAGAAGGAACCTCTGTGGTTCCAAC] consensusID : consensus_8489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CTTGACACGATAAGATGAGATATAACTTTTCGCCAAGTCTATGGATACTAGTTTATGTGATCTTCGTTCGGCTTTACAAACGTTTCAACTGCTATGACTATTGCGAAAGGCCTGATTTGTATAACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTATTCATTATTAATATTCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGAACATTTTATAAGATATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTCACGTACGACGAATTCAATCTTACCATGATGCAGAACTTGTATATGACGTTGGATACTCCCACATTGGGAATATTTATAATTACGTAGTAAACTATAACAATTTGGAAACTTATGTTATTAGAGGGAAGGATTATTGGGAGTCAAAAGGAATTATTCGACAAACGTTTATGGTACAGATTC] [+] EMBL CD098181 [CTTGACACGATAAGATGAGATATAACTTTTCGCCAAGTCTATGGATACTAGTTTATGTGATCTTCGTTCGGCTTTACAAACGTTTCAACTGCTATGACTATTGCGAAAGGCCTGATTTGTATAACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTATTCATTATTAATATTCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGAACATTTTATAAGATATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTCACGTACGACGAATTCAATCTTACCATGATGCAGAACTTGTATATGACGTTGGATACTCCCACATTGGGAATATTTATAATTACGTAGTAAACTATAACAATTTGGAAACTTATGTTATTAGAGGGAAGGATTATTGGGAGTCAAAAGGAATTATTCGACAAACGTTTATGGTACAGATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8489#0 AGACACATGAAATATCATCACAGACTGAGAGTCTGGGATTATTTGACCATCAGACCTACG 60 consensus_8489#1 -------------------------------CTTGACACGATAAG---ATGAGATATAAC 26 ** * ** * ** *** ** consensus_8489#0 CGCATATCAAATCTAAAACAATTGATGTAGAAACGCAATCAGGAATCATTTGCAAATCAC 120 consensus_8489#1 TTTTCGCCAAGTCTATGGATACTAGTTT----ATGTGATC----TTCGTTCG-GCTTTAC 77 *** **** * * * * * * *** ** ** * * ** consensus_8489#0 AGGGATTGCAGACAAAATTAGACCATAAACCGTTCGGAATGACAAAAGAAAATAGTACAC 180 consensus_8489#1 AAACGTTTCAACTGCTAT--GACTAT------TGCGAAAGGCCT-----GATTTGTATA- 123 * ** ** ** *** ** * ** ** * * * * *** * consensus_8489#0 AGTATGAGGCAGTT-CAAAGAAGAATGATAAATATAGATATTCAAGCAGATGCTCGACAT 239 consensus_8489#1 ACTATGAGATTGTCATTATTGAAAATGATACGTATAGATATTCTA-TTCATTATTAATAT 182 * ****** ** * * ******* *********** * ** * * ** consensus_8489#0 GCAGTGGCTTATCGTTATGTCCAAACA-GATGAAAGTCAACTGATACATATCAAGCAGAA 298 consensus_8489#1 TCAATGAGGATTCAACGTAACCAATCTCAACCAGTTCCGAGTGA-ACATTTTATA-AGAT 240 ** ** ** * **** * * * * * *** **** * * *** consensus_8489#0 ATACCAGATGAATGTACAGACACAATCAGGAATAATTCAAAAAGAACAAGGAATACAAAC 358 consensus_8489#1 ATTCTTCCTGGATTCTCGTTTAGTTATTACGGTAGTC----ACGTACGACGAATTCAATC 296 ** * ** ** * * ** * * * ** * **** *** * consensus_8489#0 ACGTGAAGAGGTTCAAACCACAGTGAACGTAACCGACGTTACTGTAACTCATGAATTTAA 418 consensus_8489#1 TTACCATGATGCAGAACTTGTATATGACGT--TGGATACTCCCACATTGGGAATATTTAT 354 * ** * ** * **** ** * * * ***** consensus_8489#0 AACTCGACAAATAA--ACAAGAAATTGCAAGCCACGGTAATGCCACAAATAAAAGACACC 476 consensus_8489#1 AATTACGTAGTAAACTATAACAATTTGGAAACTT--ATGTTATTAGAGGGAAGGATTATT 412 ** * * ** * ** ** *** ** * * * * * ** * consensus_8489#0 ATAATACAAACAGAACTAG--AAGGAACCTCTGTGGTTCCAAC-- 517 consensus_8489#1 GGGAGTCAAAAGGAATTATTCGACAAACGTTTATGGTACAGATTC 457 * **** *** ** * *** * * **** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||