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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 825 fasta sequence
[ACGTTAGTATGGCTTTTCGTTCCTCGATAACGTTACACACGTTAAACATAAAAGATGTCATATGACTATGGCGAAAAAAATGGCCCTCATACATGGGTGTTACGCTTTCCTAATGCTGGAGG-ACAAAA-AATC--C-CGAGGGAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTGACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATTATCCGGTGGTCCATTAACATCACAATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCATATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGTGTATTTATTAATACTAAATATGCTACAATGGAGACCGCTATTACTTATTCTGATGGATTGTCAGTTGTCGGTATATTTTTTCAATTGGGCAAATCATCGAATAATAATAA-CGCCTTAAAACGTTTATGCACATTATTGAAATCAACAAAGAAAGGCGAAAGCAAAGATATTCAACCTATGCTTGATTTGAACACACTTTTGCCAAATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAATGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTGATCAACTTGAAACATTACGACAAATGCATGCAAATTGTGTAACCTGTGGTCAAACCGATAATTTTCGTCCAATTTGTCCAATTGGTTCACGTTCAGTCAGATGTTCATTTAGAGTTTA]
[+] EMBL CD081238 [ACGTTAGTATGGCTTTTCGTTCCTCGATAACGTTACACACGTTAAACATAAAAGATGTCATATGACTATGGCGAAAAAAATGGCCCTCATACATGGGTGTTACGCTTTCCTAATGCTGGAGGAACAAAACAATC C CCAATCAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTGACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATTATCCGGTGGTCCATTAACATCAGAATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCATATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGTGTATTTATTAATACTAAATATGCTACAATGGAGACCGCTATTACTTATTCTGATGGATTGTCAGTTGTCGGTATATTTTTTCAATTGGGCAAATCAT ]
[+] EMBL CD081909 [ cCTCGAGG CCAAAA ATTCGGCACGAGGGAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTGACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATTATCCGGTGGTCCATTAACATCACAATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCATATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGTGTATTTATTAATACTAAATATGCTACAATGGAGACCGCTATTACTTATTCTGATGGATTGTCAGTTGTCGGTATATTTTTTCAATTGGGCAAATCATCGAATAATAATAA CGCCTTAAAACGTTTATGCACATTATTGAAATCAACAAAGAAAGGCGAAAGCAAAGATATTCAACCTATGCTTGATTTGAACACACTTTTGCCAAATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAATGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTGATCAACTTGAAACATTACGACAAATGCATGCAAATTGTGTAACCTGTGGTCAAACCGATAATTTTCGTCCAATTTGTCCAATTGGTTCACGTTCAGTCAGATGTTCATTTAGAGTTTA]
[+] EMBL CD081854 [ GAGGGAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTGACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATTATCCGGTGGTCCATTAACATCACAATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCATATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGTGTATTTATTAATACTAAATATGCTACAATGGAGACCGCTATTACTTATTCTGATGGATTGTCAGTTGTCGGTATATTTTTTCAATTGGGCAAATCATCGAATAATAATAA CGCCTTAAAACGTTTATGCACATTATTGAAATCAACAAAGAAAGGCGAAAGCAAAGATATTCAACCTATGCTTGATTTGAACACACTTTTGCCAAATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAATGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTGATCAACTTGAAACATTACGACAAATGCATGCAAATTGTGTAACCTGTGGTCAAACCGATAATTNTCGTCCAATTTGTCCAATTGGTTCACGTTCAGTCAGATGTTCATTTAG ]
[+] EMBL CD119673 [ ATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAAGGAAATGCAGTATTATCCGGTGGTCCATTAACATCACAATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCATATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGCGTATCTATTAATACTAAATATGCTACAATGGAGACCGCTATTACTTATTCTGATGGATTGATAGTTGTCGGTATATTTCTTCAATTGGGCAAATCATCGAATAATAATAACCGCCCTACAACGTT ]
[+] EMBL AA801609 [ taCCGGTGGTCCATTAACATCAGAATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCATATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGTGTATTTATTAATACTAAATA GCTA ]
consensusID : consensus_8490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GACATCGTTTACATCCTATAACTTTGTTGTCACCAGATATTTTGGTCATATTTCCGTTCATTTAGTGGGTGAGTGCTGAGTATTGGAGTGTTATTTTCATGATAGATTTAATTTCATGCCTTGATTTTCAGCGTATTTATACTTTTCAACAAGAATATTGAGTCACTCTACACTGAGATATTGATAGCAGACAATTCAGAAATTCTCTGGATACTTGAAATCTTTGGTGAAAATTGTACTCTTTGTGATGCATTCGCTTTTTAAATGAACAGGAATGCGACCGGAATTTGTGAGTGCAGCACACTGACTGAACTTTAAAAATAATATGCATTACTTTAGCTCATTTCTTTTATAAATGATCAGTTCATCATTTGCATGTTAAATTATCGTTTTTCCTTACCCGCAATATTTTTATATCATGCAGATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAATGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTG]
[+] EMBL CD083729 [GACATCGTTTACATCCTATAACTTTGTTGTCACCAGATATTTTGGTCATATTTCCGTTCATTTAGTGGGTGAGTGCTGAGTATTGGAGTGTTATTTTCATGATAGATTTAATTTCATGCCTTGATTTTCAGCGTATTTATACTTTTCAACAAGAATATTGAGTCACTCTACACTGAGATATTGATAGCAGACAATTCAGAAATTCTCTGGATACTTGAAATCTTTGGTGAAAATTGTACTCTTTGTGATGCATTCGCTTTTTAAATGAACAGGAATGCGACCGGAATTTGTGAGTGCAGCACACTGACTGAACTTTAAAAATAATATGCATTACTTTAGCTCATTTCTTTTATAAATGATCAGTTCATCATTTGCATGTTAAATTATCGTTTTTCCTTACCCGCAATATTTTTATATCATGCAGATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAATGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTG]
consensusID : consensus_8490#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[GCCACGAATTCGGTCCGAGGTATGCGCGAAAAAAATGGCCCTCATACATGGGTGTTACGCTTTCCTAATGCTGGAGGAACAAAACAATCCCCAATCAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTGACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATCTATCCGGTGGTCCATTAACATCAGAATATAAAC]
[+] EMBL CD077735 [GCCACGAATTCGGTCCGAGGTATGCGCGAAAAAAATGGCCCTCATACATGGGTGTTACGCTTTCCTAATGCTGGAGGAACAAAACAATCCCCAATCAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTGACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCACAATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATCTATCCGGTGGTCCATTAACATCAGAATATAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8490#0 ACGTTAGTATGGCTTTTCGTTCCTCGATAACGTTACACACGTTAAACATAAAAGATGTCA 60
consensus_8490#2 --------------------------------------------GCCACGAATTCGGTCC 16
consensus_8490#1 ------------------------------------------------------------
consensus_8490#0 TATGACTATGGCGAAAAAAATGGCCCTCATACATGGGTGTTACGCTTTCCTAATGCTGGA 120
consensus_8490#2 GAGGTATGCG-CGAAAAAAATGGCCCTCATACATGGGTGTTACGCTTTCCTAATGCTGGA 75
consensus_8490#1 ------------------------------------------------------------
consensus_8490#0 GGA-CAAAA-AATCCCGAGGGAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTG 178
consensus_8490#2 GGAACAAAACAATCCCCAATCAACTTAAACACAATGTCAATGAGGCTTGATGAATCACTG 135
consensus_8490#1 --------------------------------GACATCGTTTACATCCTATAACTTTGTT 28
* ** * * ** * * *
consensus_8490#0 ACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCAC 238
consensus_8490#2 ACTCCAATAAATGTGGACTTCAATGAACTTCAGAACCAAACTTTACACGTTAAAGATCAC 195
consensus_8490#1 GTCACCAGATATTTTGGTCATATTTCCGTTCAT--TTAGTGGGTGAGTGCTGAGTATTGG 86
* * * ** * * * * **** * * * * * **
consensus_8490#0 AATTTCTCAGTCGAAGTGAAGGGAAATGCAGTAT-TATCCGGTGGTCCATTAACATCACA 297
consensus_8490#2 AATTTCTCAGTCGAAGTGAAGGGAAATGCAGTATCTATCCGGTGGTCCATTAACATCAGA 255
consensus_8490#1 AGTGTTATTTTCATGATAGATTTAATTTCATGCCTTGATTTTCAGCGTATTTATACTTTT 146
* * * ** * * ** * ** * * *** * *
consensus_8490#0 ATATAAACTGACACAATTTCATTTACATTGGGGATCTGGTAATAACTGGGGCTCTGAGCA 357
consensus_8490#2 ATATAAAC---------------------------------------------------- 263
consensus_8490#1 CAACAAGAATATTGAGTCAC-TCTACACTGAGATATTGATAGCAGACAA--TTCAGAA-- 201
* **
consensus_8490#0 TATGATCAATGGGATAAGTTGTCCTGCTGAACTACATTGTGTATTTATTAATACTAAATA 417
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 ----ATTCTCTGGATACTTGAAATCTTTGGTGAAAATTGTACTCTTTGTGATGCATTCGC 257
consensus_8490#0 TGCTACAATGGAGACCGCTATTACTTATTCTGATGGATTGTCAGTTGTCGGTATATTTTT 477
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 TTTTTAAATGAACAGGAATGCGACCGGAATTTGTGAGTG---------CAGCACACTGAC 308
consensus_8490#0 TCAATTGGGCAAATCATCGAATAATAATAACGCCTTAAAACGTTTATGCACATTATTGAA 537
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 TGAACTTTAAAAATAAT--ATGCATTACTTTAGCTCATTTCTTTTATAAA---TGATCAG 363
consensus_8490#0 ATCAACAAAGAAAGGCGAAAGCAAAGATATTCAACCTATGCTTGATTTGAACACACTTTT 597
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 TTCATCATTTGCATGTTAAATTATCGTTTTTCCTTACCCGCAATATTTTTATATCAT--- 420
consensus_8490#0 GCCAAATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAA 657
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 -GCAGATGATTTATCCAGATACTACACATATTCCGGATCATTAACTACACCACCATGTAA 479
consensus_8490#0 TGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTGATCAACTTGA 717
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 TGAATGTGTCACATGGATCGTTCTAGATGAACCGGTAGTGATGACTATTG---------- 529
consensus_8490#0 AACATTACGACAAATGCATGCAAATTGTGTAACCTGTGGTCAAACCGATAATTTTCGTCC 777
consensus_8490#2 ------------------------------------------------------------
consensus_8490#1 ------------------------------------------------------------
consensus_8490#0 AATTTGTCCAATTGGTTCACGTTCAGTCAGATGTTCATTTAGAGTTTA 825
consensus_8490#2 ------------------------------------------------
consensus_8490#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||