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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence
[CAGGAGTTTGCCTCTTTGTTCAGCTAGGGGGTCCTGATAACTGTGGAAGCATGAGGGAATAGTTGATGAGGGAGTAGCCCCTAGTGTCTCATCCGGATCGCAGGCATACGTTGGCGGTGTATGCATTGAGTTCTTATTAGATTCATGGGAGGTCTGTGATTCGGATATGTTTTGTAGTCTAGTCGGGGATGGAAGCGGTGTCAAGATGACAAGGAGTTCTGGGAGTGGATGTGTCGATGCGTTGGGGGTTGTGGCATCAGACAATGGTGGATGTTCGTCTAGGTCTACCGGAAAAATATATCGGGCCTCGGTATTGGGGATGTCTGTGATTGTGTGATTATTCGAAGAGGTAGTAATCGCTGTTGGTGATCTCGACCACTGTAGGTGGAGGAGTCGGCGTTTGACGGCTTCTGCCGTCCTGCGTGTTAGTATGGTGCTGATATGTTGGCATAGGTCATTCTTCGTGGGGAATCTATGGGCTTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATA-GCGTGACGTCGGCTGCACTGCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGCGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATAGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATGGAACTCANAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGNAATTCAGA]
[-] EMBL CD068547 [CAGGAGTTTGCCTCTTTGTTCAGCTAGGGGGTCCTGATAACTGTGGAAGCATGAGGGAATAGTTGATGAGGGAGTAGCCCCTAGTGTCTCATCCGGATCGCAGGCATACGTTGGCGGTGTATGCATTGAGTTCTTATTAGATTCATGGGAGGTCTGTGATTCGGATATGTTTTGTAGTCTAGTCGGGGATGGAAGCGGTGTCAAGATGACAAGGAGTTCTGGGAGTGGATGTGTCGATGCGTTGGGGGTTGTGGCATCAGACAATGGTGGATGTTCGTCTAGGTCTACCGGAAAAATATATCGGGCCTCGGTATTGGGGATGTCTGTGATTGTGTGATTATTCGAAGAGGTAGTAATCGCTGTTGGTGATCTCGACCACTGTAGGTGGAGGAGTCGGCGTTTGACGGCTTCTGCCGTCCTGCGTGTTAGTATGGTGCTGATATGTTGGCATAGGTCATTCTTCGTGGGGAATCTATGGGCTTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATA GCGTGACGTC ]
[+] EMBL CD197655 [ TTCTTCGTGGGGAATCTATGGGCTTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATATGCGTGACGTCGGCTGCACTGCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCA ]
[+] EMBL CD123429 [ AATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGCGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATAGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATGGAACTCANAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGNAATTCAGA]
consensusID : consensus_8497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 450 fasta sequence
[TATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCCG]
[+] EMBL CD154759 [TATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCC ]
[+] EMBL CD154468 [TATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCC ]
[-] EMBL CD154449 [ ATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGCTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCCG]
[-] EMBL CD154705 [ ATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8497#0 CAGGAGTTTGCCTCTTTGTTCAGCTAGGGGGTCCTGATAACTGTGGAAGCATGAGGGAAT 60
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 AGTTGATGAGGGAGTAGCCCCTAGTGTCTCATCCGGATCGCAGGCATACGTTGGCGGTGT 120
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 ATGCATTGAGTTCTTATTAGATTCATGGGAGGTCTGTGATTCGGATATGTTTTGTAGTCT 180
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 AGTCGGGGATGGAAGCGGTGTCAAGATGACAAGGAGTTCTGGGAGTGGATGTGTCGATGC 240
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 GTTGGGGGTTGTGGCATCAGACAATGGTGGATGTTCGTCTAGGTCTACCGGAAAAATATA 300
consensus_8497#1 ---------------------------------------TATGCCTGCCC---ATTTTTA 18
** * ** ** * * **
consensus_8497#0 TCGGGCCTCGGTATTGGGGATGTCTGTGATTGTGTGATTATTCGAAGAGGTAGTAATCGC 360
consensus_8497#1 ATCAACATCGTTATCA--AATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTT 76
* *** *** **** * * * * * *** * ****
consensus_8497#0 TGTTGGTGATCTCGACCACTGTAGGTGGAGGAGTCGGCGTTTGACGGCTTCTGCCGTCCT 420
consensus_8497#1 TCTTTGTAT-----ATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTAC 131
* ** ** * ** ** * * * * * * * * * *
consensus_8497#0 GCGTGTTAGTATGGTGCTGATATGTTGGCATAGGTCATTCTTCGTGGGGAATCTATGGGC 480
consensus_8497#1 ATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCT 191
*** * ** * * *** ** ** * ** * * ***
consensus_8497#0 TTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATAGCGTGACGT- 539
consensus_8497#1 TCTGTCCATAAAAGTAAGT-GTAACTTAATGT-ATATAGTTAACTCGAGTGCATTACATT 249
* * ** * * **** * * ** * * * * ** * ** *
consensus_8497#0 CGGCTGCACTGCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACC 599
consensus_8497#1 CAATCGCA-TGTATTTCGTAATTATTTTTCGGTGTTAAG--CTGGTGATATGCTTGATGC 306
* *** ** * *** ** ** * * * * ** **** * *
consensus_8497#0 TCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTC 659
consensus_8497#1 TATTACGAGTTCACCTTAT---TCGGTAAACAGA-ACGAAGGTCAAAGACACAGTGACAC 362
* ** *** *** * * *** **** * ** * *** * * * ** *
consensus_8497#0 ATCAACCAAC-CACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCT 718
consensus_8497#1 GATAGGTGTTATAATTGTTTTGCTACTA--AACGACCCAGCTATTCCTATTGCTTAGTAT 420
* * * * * ** * * ** * * * * **** ** *
consensus_8497#0 AGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCTTCTATCCCATACACACCAAC 778
consensus_8497#1 TCTTA-TACAATGACACTCGACAAGAC-CCCG---------------------------- 450
* * **** * * ** * ** ** * **
consensus_8497#0 AAATTCAGGCGAAGACTGTCAGCGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATAC 838
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 ACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCA 898
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 TAGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACG 958
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 TGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACA 1018
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 GTCGAAGAACATATGGAACTCANAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCT 1078
consensus_8497#1 ------------------------------------------------------------
consensus_8497#0 TCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGNAATTCAGA 1126
consensus_8497#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||