cluster # 8498

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Schistosoma mansoni
cluster # 8498 cluster # 8498 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8498#0 length = 416 sequences # 2
consensus_8498#1 length = 407 sequences # 1

consensus_8498#2 length = 312 sequences # 2
consensus_8498#3 length = 276 sequences # 1
consensus_8498#4 length = 189 sequences # 1

consensusID : consensus_8498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence

                              [TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCGATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTCTTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAATCAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAATCTCACGAGTGCAGGATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACGGCCGTCCAGTGCTTCCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAGCAATGAAAACATTTGATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCATTCAAGTCTAA]

[+] EMBL CD087219             [TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCGATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTCTTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAATCAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAATCTCACGAGTGCAGGATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACGGCCGTCCAGTGCTTCCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAGCAATGAAAACATTTGATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCATTCAAGTCTAA]
[+] EMBL CD087255             [TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCGATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTCTTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAATCAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGCTCGAATCT                                                                                                                                                                                           ]




>consensus_8498#0
TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCG
ATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTC
TTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAAT
CAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAATCTCACGAGTGCAG
GATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACGGCCGTCCAGTGCTT
CCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAGCAATGAAAACATTT
GATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCATTCAAGTCTAA

consensusID : consensus_8498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGAGTTGCACCCATGTGTTCCTCTGTCCTTGAATTTCAATGATTGGCTTGCCTTCTTTGCCCTTGACCGGTCTCTCTGGTTTACTATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCATATTTCCTTCTCTTGCAGCTTTTTCCGCTGTCGTTGCTAACTCCTTCACGTATTTCTGCTCGTCGAATCGAATGCTCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCTCTTGACTTTTTCTGTTCTTGTTCAGCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTTCTTGAATCTTATTCGGGGTTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGCTTACA]

[+] EMBL BG931394             [CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGAGTTGCACCCATGTGTTCCTCTGTCCTTGAATTTCAATGATTGGCTTGCCTTCTTTGCCCTTGACCGGTCTCTCTGGTTTACTATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCATATTTCCTTCTCTTGCAGCTTTTTCCGCTGTCGTTGCTAACTCCTTCACGTATTTCTGCTCGTCGAATCGAATGCTCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCTCTTGACTTTTTCTGTTCTTGTTCAGCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTTCTTGAATCTTATTCGGGGTTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGCTTACA]




>consensus_8498#1
CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGAGTTGCACCCATGTGTTCCTCT
GTCCTTGAATTTCAATGATTGGCTTGCCTTCTTTGCCCTTGACCGGTCTCTCTGGTTTAC
TATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCATATTTCCTTCTCTTG
CAGCTTTTTCCGCTGTCGTTGCTAACTCCTTCACGTATTTCTGCTCGTCGAATCGAATGC
TCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCTCTTGACTTTTTCTGTTC
TTGTTCAGCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTTCTTGAATCTTATTCGGGG
TTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGCTTACA

consensusID : consensus_8498#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 312
fasta sequence

                              [TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCTACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCAACAGCAACCACAAATTCTTCATT]

[-] EMBL CD153080             [TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCTACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGC                                  ]
[+] EMBL CD164917             [                                                                                      GACCTACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCAACAGCAACCACAAATTCTTCATT]




>consensus_8498#2
TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGAGTGTTTGTCA
CGCATTCAGACAGCACCAACACCTTTGACCTACCACATTTGTTTTATTCGACGATTACCT
ACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTG
ACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTA
TGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCAACAGCAACCAC
AAATTCTTCATT

consensusID : consensus_8498#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGAGAGACCGGTCAAGGACAAAGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACACATGGGTGGGTTTCTTGAATAGACCAGATCTACTGAACCCACCAGACATTGTAGCAGCACCTACAGACCTTCCTATATATGTCACTCCACCAACGATCGAATAAATCAGGATGGCCACCAGACAAATCAAGAATGGGAAAGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT]

[+] EMBL CD066967             [TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGAGAGACCGGTCAAGGACAAAGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACACATGGGTGGGTTTCTTGAATAGACCAGATCTACTGAACCCACCAGACATTGTAGCAGCACCTACAGACCTTCCTATATATGTCACTCCACCAACGATCGAATAAATCAGGATGGCCACCAGACAAATCAAGAATGGGAAAGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT]




>consensus_8498#3
TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGAGAGACCGGTCAAGGACAA
AGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACACATGGGTGGGTTTCTTGAA
TAGACCAGATCTACTGAACCCACCAGACATTGTAGCAGCACCTACAGACCTTCCTATATA
TGTCACTCCACCAACGATCGAATAAATCAGGATGGCCACCAGACAAATCAAGAATGGGAA
AGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT

consensusID : consensus_8498#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [GAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCCACGGTACTCGTCGTATTCGACGATTACCTACAAAACTTGGACGATTCTTCTTGACAGGTGGCTTCTTTGCTGATTTATGGATCATGTTGACTCCTGGCTGGGTTGCTGATTTATGGATCATGTTGA]

[+] EMBL CD152743             [GAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCCACGGTACTCGTCGTATTCGACGATTACCTACAAAACTTGGACGATTCTTCTTGACAGGTGGCTTCTTTGCTGATTTATGGATCATGTTGACTCCTGGCTGGGTTGCTGATTTATGGATCATGTTGA]




>consensus_8498#4
GAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGA
CCCACGGTACTCGTCGTATTCGACGATTACCTACAAAACTTGGACGATTCTTCTTGACAG
GTGGCTTCTTTGCTGATTTATGGATCATGTTGACTCCTGGCTGGGTTGCTGATTTATGGA
TCATGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8498#2      ----------TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGA 50
consensus_8498#4      --------------------------------------GAGAAAGGAACGACGATCCTGA 22
consensus_8498#0      TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCG 60
consensus_8498#3      ------------------TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGA 42
consensus_8498#1      ---------CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGA-GTTGCACCCAT 50
                                                                              *   

consensus_8498#2      GTGTTTG-TCACGCATTCAGACAGCA--CCAACACCTTTGACCTA-CCACATTTGTTTTA 106
consensus_8498#4      GTGTTTG-TCACGCATTCAGACAGCA--CCAACACCTTTGACCCA-CGGTACTCGTCGTA 78
consensus_8498#0      ATATTCT-TTCGATACCACGAGATTG--CCAGTAAATATACTCTATCTGGACCAGTCACA 117
consensus_8498#3      GAGACCGGTCAAGGACAAAGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACAC 102
consensus_8498#1      GTGTTCC--TCTGTCCTTGAATTTCA--ATGATTGGCTTGCCTTCTTTGCCCTTGACCGG 106
                                          *                                 *     

consensus_8498#2      TTCGAC-GATTACCTACATAACCTGGAC---GATTCT-TCTTGACACCTGGCTT------ 155
consensus_8498#4      TTCGAC-GATTACCTACAAAACTTGGAC---GATTCT-TCTTGACAGGTGGCTT------ 127
consensus_8498#0      GTCTTCTGGTTTGCAATTTATCAAAGAG---GACGAAGTCGTAAAAGATGGCTCAA---- 170
consensus_8498#3      ATGGGTGGGTTTCTTGAATAGACCAGATC-TACTGAACCCACCAGACATTGTAGCAGC-- 159
consensus_8498#1      TCTCTCTGGTTTACTATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCAT 166
                             * **              *             *     *  * *         

consensus_8498#2      CTTTGCTGATTT----A--TGGATCATGTTGACACCTGGC---TTCATTGCTGATTTATG 206
consensus_8498#4      CTTTGCTGATTT----A--TGGATCATGTTGACTCCTGGC---TGGGTTGCTGATTTATG 178
consensus_8498#0      TTCTGTCAATCA----ACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAA 226
consensus_8498#3      ACCTACAGACCTTCCTATATATGTCACTCCACCAACGATCGAATAAATCA-GGATGGCCA 218
consensus_8498#1      ATTTCCTTCTCTTGCAGCTTTTTCCGCTGTCGTTGCTAAC---TCCTTCACGTATTTCTG 223
                         *               *    *              *   *   *      *     

consensus_8498#2      GATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGAC 266
consensus_8498#4      GATCATGTTGA------------------------------------------------- 189
consensus_8498#0      TCTCACGAGTGCAGGATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACG 286
consensus_8498#3      CCAGACAAATCAAGAATGGGAAAGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT-- 276
consensus_8498#1      CTCGTCGAATCGAATGCTCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCT 283
                                                                                  

consensus_8498#2      TGCGAATACAGCTATGACGGCCAACAGCAACCACAAATTCTTCATT-------------- 312
consensus_8498#4      ------------------------------------------------------------
consensus_8498#0      GCCGTCCAGTGCTTCCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAG 346
consensus_8498#3      ------------------------------------------------------------
consensus_8498#1      CTTGACTTTTTCTGTTCTTGTTCA-GCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTT 342
                                                                                  

consensus_8498#2      ------------------------------------------------------------
consensus_8498#4      ------------------------------------------------------------
consensus_8498#0      CAATGAAAACATTTGATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCAT 406
consensus_8498#3      ------------------------------------------------------------
consensus_8498#1      CTTGAATCTTATTCGGGGTTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGC 402
                                                                                  

consensus_8498#2      ----------
consensus_8498#4      ----------
consensus_8498#0      TCAAGTCTAA 416
consensus_8498#3      ----------
consensus_8498#1      TTACA----- 407