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Schistosoma mansoni
cluster # 8502 cluster # 8502       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8502#0 length = 1005 sequences # 5  
consensus_8502#1 length = 401 sequences # 1  
consensus_8502#2 length = 281 sequences # 1  

consensusID : consensus_8502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1005
fasta sequence
                              [TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTGTTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTCAATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTTTTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTTTTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC]

[+] EMBL CD077362             [TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTGTTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD083590             [                                                                                                                                               aggCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATAT ATGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD083591             [                                                                                                                                                                                                                                                                                                                                                                  TGATTGTTTGTTTTTTTGGATATATTTATTATAATTATTTCAGTCTCTTATTATTTTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTAATTGATTCAATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTTTTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATA                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD082479             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTTTTTAATATTC                                   ]
[-] EMBL CD076077             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGGTCTTATTATTCTTGCTTAAAAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC]


>consensus_8502#0 TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAAT GGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAG TTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGT TTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTG TGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCC TTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTG TTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTC GTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAA ACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTC AATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTT TTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCAT TTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTT GTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTC TTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGT TTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTT ACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTT TTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC



consensusID : consensus_8502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence
                              [CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT]

[-] EMBL AA999644             [CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT]


>consensus_8502#1 CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAG TTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNA CTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCA CTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCT GTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGA TTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAG TTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT



consensusID : consensus_8502#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence
                              [TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTTTTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG]

[+] EMBL AW018286             [TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTTTTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG]


>consensus_8502#2 TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTT TCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTT TGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTAT TCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTT TTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8502#0      TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAAT 60
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      GGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAG 120
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGT 180
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTG 240
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCC 300
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTG 360
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTC 420
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      GTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAA 480
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      ACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTC 540
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      AATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTT 600
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      ------------------------------------------------------------
                                                                                  

consensus_8502#0      TTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCAT 660
consensus_8502#2      ------------------------------------------------------------
consensus_8502#1      --------------------------------------------------------CTTA 4
                                                                                  

consensus_8502#0      TTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTT 720
consensus_8502#2      ------------------------------TTTCGGCGCATT-GTGGAGACGTTTCTTTT 29
consensus_8502#1      CCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGA 64
                                                      *           ** *        **  

consensus_8502#0      GTGCCCCTGTCTGGATATTT-GGTTTAACCTTTC------TATTGTAAGTAACCTATTCT 773
consensus_8502#2      GTGCCCCTGTCTGGATATTT-GGTTTAACCTTTC------TATTGTAAGTAACCTATTCT 82
consensus_8502#1      AATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTA 124
                            ** * *    ****  ******   ***      * ***** * ***  * *  

consensus_8502#0      TCTTTTCTTCTTCTCCATTATC-ATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGA 832
consensus_8502#2      TCTTTTCTTCTTCTCCATTATC-ATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGA 141
consensus_8502#1      CGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGC-ATTCTCCAACCCACTC 183
                        *   * * **   * * **  * *** ***            * *    **       

consensus_8502#0      TTACTTG--TTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATAT 890
consensus_8502#2      TTACTTG--TTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATAT 199
consensus_8502#1      TGTCTTGGGCCTTCTTTTCTAGT-TCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGT 242
                      *  ****    **** *   * * *  *  **  ** ** ******      ** * * *

consensus_8502#0      CTCTGTTTT---TACTCAACTGATTTAAAACAAAACATTTATTATT---TTTGTTTGGTT 944
consensus_8502#2      CTCTGTTTT---AACTCAACTGATTTAAAACAAAACATTTATT------TTTGTTGGGTT 250
consensus_8502#1      CTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATT 302
                      ********       ***  ** ***         *  ** **      * *    * **

consensus_8502#0      CT-TATTA-TTCTTGCTTTTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAA 1002
consensus_8502#2      CT-TATAAATTCTGGCTTTTTAATATCCTATG---------------------------- 281
consensus_8502#1      CCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTT 362
                      *  * *   * *  *     *  * *  ****                            

consensus_8502#0      ANC------------------------------------ 1005
consensus_8502#2      ---------------------------------------
consensus_8502#1      CTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT 401
                                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)