cluster # 8503

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Schistosoma mansoni
cluster # 8503 cluster # 8503 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8503#0 length = 634 sequences # 4

consensus_8503#1 length = 595 sequences # 2
consensus_8503#2 length = 322 sequences # 1

consensusID : consensus_8503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 634
fasta sequence

                              [CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAATATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTAAGAAAGCACATATGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTTATTAGCTGATAAAGCTTGTGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTCAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACATGAGAAGATGGACAGGATATATCGAGTAATCCAATCA]

[+] EMBL AI068195             [CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAATATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTAAGAAAGCACATATGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTTATTAGCTGATAAAGCTTGTGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTCAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACATGAGAAGATGGACAGGATATATCGAGTAATCCAATCA]
[-] EMBL CD188365             [                                                                                                                                               AGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTTATTAGCTGATAAAGCTTGTGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCCTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTCAGTC                                                                                                                                           ]
[-] EMBL CD136665             [                                                                                                                                                                                                                                  TTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTCAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATC                                                           ]
[+] EMBL CD127032             [                                                                                                                                                                                                                                                                                     accTTTCAACTTCTGGT TTTCATCTTCTAACGCTTCTGATAGA CTAACAGTGAATCTGA ACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCGTCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTCAGTCAGTGCAGAACCAAGTGGACGAAAATAGGCTTCATCA                                                                                                       ]




>consensus_8503#0
CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAATATAATTGATC
AAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCAC
ATGAGTAAGAAAGCACATATGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTA
TCTTTATTAGCTGATAAAGCTTGTGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGA
CCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCA
TCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCA
GAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGA
TTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGC
ATAATACGTTCAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATT
GCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACATGA
GAAGATGGACAGGATATATCGAGTAATCCAATCA

consensusID : consensus_8503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [ATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTTATTAGCTGATAAAGCTTGGGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACATGAGAAGATGGACAGGATATATCGAGTAACCTCGTGCCGAATTNTGGCC]

[+] EMBL CD076720             [ATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTTATTAGCTGATAAAGCTTGGGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACATGAGAAGATGGACAGGATATATCGAGTA                     ]
[-] EMBL CD083149             [ TAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTTATTAGCTGATAAAGCTTGTGGTAAATTCATAGTTTACGTTTTTGTAGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGTGCATAATACGTTAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACATGAGAAGATGGACAGGATATATCGAGTGACCTCGTGCCGAATTNTGGCC]




>consensus_8503#1
ATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTAT
ATTTGTTCACATGAGTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAA
ATAACTTTTATCTTTATTAGCTGATAAAGCTTGGGGTAAATTCATAGTTTACGTTTTTGT
AGCAGTCAGACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTC
TGGTCGGTCATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACT
GACAGGACCAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATC
ATTTGAATGATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTA
CGTGGAGTGCATAATACGTTAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCA
CCGCATATTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGG
GGTACATGAGAAGATGGACAGGATATATCGAGTAACCTCGTGCCGAATTNTGGCC

consensusID : consensus_8503#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [ATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTAATAAGCCGATAAAGCTTGTGGTAAAATCATAGTTTACGTTTTTGTAGGAGTGCAGACCAATTGTGTTCAATTCAGCAAATAGTTTATAGGGCTCAGTTTCAACTACGGGCGGGCAATTCCAAGCCTCCGGAAGGACAACACGGACCCGTTACAAACACACGCACGCGCCCAAAATTTGAACCCTGC]

[+] EMBL AI739721             [ATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCACATGAGTTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTTATCTTAATAAGCCGATAAAGCTTGTGGTAAAATCATAGTTTACGTTTTTGTAGGAGTGCAGACCAATTGTGTTCAATTCAGCAAATAGTTTATAGGGCTCAGTTTCAACTACGGGCGGGCAATTCCAAGCCTCCGGAAGGACAACACGGACCCGTTACAAACACACGCACGCGCCCAAAATTTGAACCCTGC]




>consensus_8503#2
ATAATTGATCAAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTAT
ATTTGTTCACATGAGTTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAA
AATAACTTTTATCTTAATAAGCCGATAAAGCTTGTGGTAAAATCATAGTTTACGTTTTTG
TAGGAGTGCAGACCAATTGTGTTCAATTCAGCAAATAGTTTATAGGGCTCAGTTTCAACT
ACGGGCGGGCAATTCCAAGCCTCCGGAAGGACAACACGGACCCGTTACAAACACACGCAC
GCGCCCAAAATTTGAACCCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8503#0      CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAATATAATTGATC 60
consensus_8503#1      --------------------------------------------------ATAATTGATC 10
consensus_8503#2      --------------------------------------------------ATAATTGATC 10
                                                                        **********

consensus_8503#0      AAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCAC 120
consensus_8503#1      AAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCAC 70
consensus_8503#2      AAGACATAAACTGGGACCATGTACAAATGATATCTTTCACACAAAATTATATTTGTTCAC 70
                      ************************************************************

consensus_8503#0      ATGAGT-AAGAAAGCACATATGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTT 179
consensus_8503#1      ATGAGT-AAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTT 129
consensus_8503#2      ATGAGTTAAGAAAGCACATAGGAAAGACTGTACAAAAGGATTTATTTCAAAATAACTTTT 130
                      ****** ************* ***************************************

consensus_8503#0      ATCTTTATTAGCTGATAAAGCTTGTGGTAAATTCATAGTTTACGTTTTTGTAGCAGT-CA 238
consensus_8503#1      ATCTTTATTAGCTGATAAAGCTTGGGGTAAATTCATAGTTTACGTTTTTGTAGCAGT-CA 188
consensus_8503#2      ATCTTAATAAGCCGATAAAGCTTGTGGTAAAATCATAGTTTACGTTTTTGTAGGAGTGCA 190
                      ***** ** *** *********** ****** ********************* *** **

consensus_8503#0      GACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGT 298
consensus_8503#1      GACCCATTTGTTCTAATTCAGCAAATAGTTTATTGGCTTCAGTTTCAACTTCTGGTCGGT 248
consensus_8503#2      GACCAATTGTGTTCAATTCAGCAAATAGTTTATAGGGCTCAGTTTCAACTACGGGCGGGC 250
                      **** ***   *  ******************* **  ************ * **  ** 

consensus_8503#0      CATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGAC 358
consensus_8503#1      CATCTTCTAACGCTTCTGATAGAGCTAACAGTGAATCTGATACAATACAACTGACAGGAC 308
consensus_8503#2      AA--TTCCAA-GCCTCCGGAAGGAC-AACA-CGGACCCGTTACAAACACACGCACGCGCC 305
                       *  *** ** ** ** *  **  * ****  * * * * *****    **  **  * *

consensus_8503#0      CAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAAT 418
consensus_8503#1      CAGAAAGTTTTGAATCCATTGTAACATCCCCATCATTGTCAATTTCATGATCATTTGAAT 368
consensus_8503#2      CAAAA---TTTGAACCCTGC---------------------------------------- 322
                      ** **   ****** **                                           

consensus_8503#0      GATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGT 478
consensus_8503#1      GATTAAAGACAAACTTCAACAGTCGAATTGCAGCTAACCTAGTACGCCAGTACGTGGAGT 428
consensus_8503#2      ------------------------------------------------------------
                                                                                  

consensus_8503#0      GCATAATACGTTCAGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATA 538
consensus_8503#1      GCATAATACGTT-AGTCAGTGCAGAACCAAGTGGACGAAGATAGGCTTCATCACCGCATA 487
consensus_8503#2      ------------------------------------------------------------
                                                                                  

consensus_8503#0      TTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACAT 598
consensus_8503#1      TTGCATTCAAATATGAGCCTAATACATCTTGAATATCGATTTCACTTATTGGGGGTACAT 547
consensus_8503#2      ------------------------------------------------------------
                                                                                  

consensus_8503#0      GAGAAGATGGACAGGATATATCGAGTAATCCAATCA------------ 634
consensus_8503#1      GAGAAGATGGACAGGATATATCGAGTAACCTCGTGCCGAATTNTGGCC 595
consensus_8503#2      ------------------------------------------------