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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence
[ATTAAATTATGAAAACCATATATTAAATACATTATTGGCACATCTTCGTTCAGTTGTTCATTACATGCTGGATAATCCTTTCAATTGTGTGGTGATAACACGGGCTCTCTGTTTCTCTTTCTGTTCTCTTCATGGTAACCAAGGTTTGACTGGGTAATTTCAAATAAATTAAGCATGGGGCAGATTGTTATTAGTGAAAATACAATATTTGTAGTATTCCAAGGTGTAGAAAAATTAATTTTTCTGATATTTCGTGACTCAATGTAGGCCAATTCTTCAGAGAATAGATAAACAAATTGAATTAGCCTTCTTCGTCCTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCAAGTCAATCGACATCTGGATAATGTACATTCTTCTCGCTGCATATTGCCAGCAACCACGATATCTCTGATTAGGCCTTCTGTAACATCTACAGCGAAAGGTCTTACACTTTTCAGAAACGCACCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCACCAATGATGACCTTGTGTCCGTGATAAACCAATAAGGCATCAAGCAACACTATCAGGCTTGAGTTGACCATGAACCCTTATTGATTCTCGATGTAGTTGCTGATCACCTAGCCTATCCCATTTAGTCCAGAA]
[-] EMBL CD152842 [ATTAAATTATGAAAACCATATATTAAATACATTATTGGCACATCTTCGTTCAGTTGTTCATTACATGCTGGATAATCCTTTCAATTGTGTGGTGATAACACGGGCTCTCTGTTTCTCTTTCTGTTCTCTTCATGGTAACCAAGGTTTGACTGGGTAATTTCAAATAAATTAAGCATGGGGCAGATTGTTATTAGTGAAAATACAATATTTGTAGTATTCCAAGGTGTAGAAAAATTAATTTTTCTGATATTTCGTGACTCAATGTAGGCCAATTCTTCAGAGAATAGATAAACAAATTGAATTAGCCTTCTTCGTCCTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCAAGTCAATCGACATCTGGATAATGTACATTCTTCTCGCTGCATATTGCCAGCAACCACGATATCTCTGATTAGGCCTTCTGTAACATCTACAGCGAAAGGTCTTACACTTTTCAGAAACGCACCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCACCA ]
[+] EMBL CD093221 [ AAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCACCAATGATGACCTTGTGTCCGTGATAAACCAATAAGGCATCAAGCAACACTATCAGGCTTGAGTTGACCATGAACCCTTATTGATTCTCGATGTAGTTGCTGATCACCTAGCCTATCCCATTTAGTCCAGAA]
consensusID : consensus_8505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[GGATATAGTATAGGAATGAAGAACGTTATGAAGCAATTTAATCTCAAGGTTTAAGGGAAGACAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGTGGACCCCAACCAGGTAGTCTGCATCTGTCAACATGGCTCAGACTGGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTTTTCCAACCATCCCCTACACTAGTCAGCATAGCGCGTCGTGGTAATCGGTGTTCAGGCATACGTAACACATGGCCTAACCATCTCAGTCGATGAAGATTCATGGCCTCATCAACTGATTTACCATCACTTCCTAATACCCTGTCTAACCTCACTATTACTTAACAAAGTTACCTAAATAATGATATATATATATACCTAAGTAATAGTTGTGTTTTAGATAATGGTTGAGTTTCAGGTATGTTTTTCCAACGTATTCTACTGAGAAGTAGAGACCTGTGCAGCCTGATCAAATCAAGCATGAATGGAATAGTTTTCACTGATAATTATGATTATACTGAGAATGAACTGAAATTGANAATATTGATGACCATTTGATTGAGTTTAATTTAGTANACTAAAAAGTATGTG]
[+] EMBL CD117276 [GGATATAGTATAGGAATGAAGAACGTTATGAAGCAATTTAATCTCAAGGTTTAAGGGAAGACAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGTGGACCCCAACCAGGTAGTCTGCATCTGTCAACATGGCTCAGACTGGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTTTTCCAACCATCCCCTACACTAGTCAGCATAGCGCGTCGTGGTAATCGGTGTTCAGGCATACGTAACACATGGCCTAACCATCTCAGTCGATGAAGATTCATGGCCTCATCAACTGATTTACCATCACTTCCTAATACCCTGTCTAACCTCACTATTACTTAACAAAGTTACCTAAATAATGATATATATATATACCTAAGTAATAGTTGTGTTTTAGATAATGGTTGAGTTTCAGGTATGTTTTTCCAACGTATTCTACTGAGAAGTAGAGACCTGTGCAGCCTGATCAAATCAAGCATGAATGGAATAGTTTTCACTGATAATTATGATTATACTGAGAATGAACTGAAATTGANAATATTGATGACCATTTGATTGAGTTTAATTTAGTANACTAAAAAGTATGTG]
consensusID : consensus_8505#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 572 fasta sequence
[AGTCACATTGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGACCTAAAAGTTTCCATTAGTTACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGTGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT]
[+] EMBL CD094529 [AGTCACATTGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGACCTAAAAGTTTCCATTAGTCACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATATATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGCGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTAATCGATTCTGAGCCATGTCACC ]
[-] EMBL CD095381 [ TGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGACCTAAAAGTTTCCATTAGTTACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGTGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT]
[-] EMBL CD095200 [ CCTAAAAGTTTCCATTAGTTACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGTGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCGCAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT]
consensusID : consensus_8505#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[TGGTGCTGTTGCGCACAATGTGCATATGTGTTGTGCTGAGGATTGTGAGTGTTGATAGAGGAGTTGCTAGTGAATGAGTGAATGATTCAGTTTGAATGTTCTGTGATGTGCTGTGATGTGATGTGACGGTGAGTGTGTCGGTGGTAATGTGATAGGTGGTGTTAGTGTTTAGTTGTCTGGATGTGGGTGTGTTGGTGATATGTAGTTGTTGGTGTGTGTCTCTGATGGTGAGTGTGGATATGTTCTGACGACAATCATTCGCATGAGTGTAGTCGTTGAAGAGAGATTGGTGTGGGACAGATGGTTGTTGTGTAGTATCAGTGGAGTTATTTCTGTATGGAGTTGATG]
[+] EMBL CD155223 [TGGTGCTGTTGCGCACAATGTGCATATGTGTTGTGCTGAGGATTGTGAGTGTTGATAGAGGAGTTGCTAGTGAATGAGTGAATGATTCAGTTTGAATGTTCTGTGATGTGCTGTGATGTGATGTGACGGTGAGTGTGTCGGTGGTAATGTGATAGGTGGTGTTAGTGTTTAGTTGTCTGGATGTGGGTGTGTTGGTGATATGTAGTTGTTGGTGTGTGTCTCTGATGGTGAGTGTGGATATGTTCTGACGACAATCATTCGCATGAGTGTAGTCGTTGAAGAGAGATTGGTGTGGGACAGATGGTTGTTGTGTAGTATCAGTGGAGTTATTTCTGTATGGAGTTGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8505#1 ------GGATATAGTATAGGAATGAAGAACGTTAT-GAAGCAATTTAATCTCAAGGTTTA 53
consensus_8505#2 ---------AGTCACATTGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGA 51
consensus_8505#3 ------------------------------------------------------------
consensus_8505#0 ATTAAATTATGAAAACCATATATTAAATACATTATTGGCACATCTTCGTTCAGTTGTTCA 60
consensus_8505#1 AGGGAAGACAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT 113
consensus_8505#2 CCTAAAAGTTTCCATTAGTTACCATCACGTAATTA-GGTGGAATGTCAGTTGTGTGGCAT 110
consensus_8505#3 ------------------------------------------------------------
consensus_8505#0 TTACATGCTGGATAATCCTTTCAATTGTGTGGTGATAACACGGGCTCTCTGTTTCTCTTT 120
consensus_8505#1 AGAGTCTCCAACCATTGGTTACGATAGTCACGTG-GACCCCAACCAGGTAGTCTGCATCT 172
consensus_8505#2 GCTGCTACTCAATACCAATCAACAGATCTTTGAA-AAACCTGAAACGCAAGGAAACTTGA 169
consensus_8505#3 ------------------------TGGTGCTGTT-GCGCACAATGTGCATATGTGTTGTG 35
consensus_8505#0 CTGTTCTCTTCATGGTAACCAAGGTTTGACTGGGTAATTTCAAATAAATTAAGCATGGGG 180
* *
consensus_8505#1 GTCAACATGGCTCAGACTGGAA-GTTA-----GTGACTTCAAGCACTGATGCCACGTTTT 226
consensus_8505#2 TTAGACGTGTGTAATCGTCATA-GATA-----AAAAACCAGAGAAGTACTA------TTT 217
consensus_8505#3 CTGAGGATTGTGAGTGTTGATA-GAGG-----AGTTGCTAGTGAATGAGTGA-ATGATTC 88
consensus_8505#0 CAGATTGTTATTAGTGAAAATACAATATTTGTAGTATTCCAAGGTGTAGAAAAATTAATT 240
* * * *
consensus_8505#1 GGTTTGGCCGCCCCTAACTCTTTTCCAACCATCCCCTACACTAGTCAGCATAGCGCGTCG 286
consensus_8505#2 ATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCT-----GTAACCGGTAAATCAGTTAG 272
consensus_8505#3 AGTTTGAATGTTCTGTGATGTGCTGTGATGTGATG-------TGACGGTGAGTGTGTCGG 141
consensus_8505#0 TTTCTGATATTTCGTGACTCAATGTAGGCCAATTCTTCAGAGAATAGATAAACAAATTGA 300
* *
consensus_8505#1 --TGGTAATCGGTGTTCAGGCATACGTAACACATGGCCTAACCATC--TCAG---TCGAT 339
consensus_8505#2 --ATTTGTATGACGTGGAAGGGTACC--ACAGAATTTCGAACTATCAGTCAG---TCAGC 325
consensus_8505#3 --TGGTAATGTGATAGGTGGTGTTAGTGTTTAGTTGTCTGGATGTGGGTGTG---TTGGT 196
consensus_8505#0 ATTAGCCTTCTTCGTCCTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGC 360
* * *
consensus_8505#1 GAAGATTCATGGCCTCATCAACTGA-TTTACCATCACTTCCTAATACCCTGTC--TAACC 396
consensus_8505#2 GACAA--CGTAGAACCAGGCACATA-TATGC-ATCGGTTC-----AAGTTGCC--ATACC 374
consensus_8505#3 GATAT---GTAGTTGTTGGTGTGTG-TCTCTGATGGTGAGTGTGGATATGTTC--TGACG 250
consensus_8505#0 AGCCAAGTCAATCGACATCTGGATAATGTACATTCTTCTCGCTGCATATTGCCAGCAACC 420
* * * * * **
consensus_8505#1 TCACTATTACTTAACAAAGTTACCTAAATAATGATATATATATATACCTAAGTAAT---A 453
consensus_8505#2 TCATTAGCAC--AACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGT---G 429
consensus_8505#3 ACAATCATTCGCATGAGTGTAGTCGTTGAAGAGAGATTGGTGTGGGAC-AGATGGT---T 306
consensus_8505#0 ACGATATCTCTGATTAGGCCTTCTGTAACATCTACAGCGAAAGGTCTTACACTTTTCAGA 480
* * * * * * * * * *
consensus_8505#1 GTTGTGTTTTAGATAATGGTTGAGTTTCAGG-TATGTTTTTCCAACGTATTCTACTGAGA 512
consensus_8505#2 GTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGA 489
consensus_8505#3 GTTGTGTAGTAT-CAGTGGAGTTATTTCTGTATGGAGTTGATG----------------- 348
consensus_8505#0 AACGCACCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAAT 540
* * * * *
consensus_8505#1 AGTAGAGACCTGTGCAGCCTGATCAAATCAAGCATGAATGGAATAG-TTTTCACTGATA- 570
consensus_8505#2 AGCAAT------TTTAATCTCACCATTTAAGAGAAGATAAAGAGTG-TATACACCTACGC 542
consensus_8505#3 ------------------------------------------------------------
consensus_8505#0 TAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGC 600
consensus_8505#1 -ATTATGATTATACTGAGAATGAACTGAAATTGANAATATTGATGACCATTTGATTGAGT 629
consensus_8505#2 CATTGTGATCG-ATTCTGAGCCATGTCACCT----------------------------- 572
consensus_8505#3 ------------------------------------------------------------
consensus_8505#0 CACCAATGATGACCTTGTGTCCGTGATAAACCAATAAGGCATCAAGCAACACTATCAGGC 660
consensus_8505#1 TTAATTTAGTANACTAAAAAGTATGTG--------------------------------- 656
consensus_8505#2 ------------------------------------------------------------
consensus_8505#3 ------------------------------------------------------------
consensus_8505#0 TTGAGTTGACCATGAACCCTTATTGATTCTCGATGTAGTTGCTGATCACCTAGCCTATCC 720
consensus_8505#1 --------------
consensus_8505#2 --------------
consensus_8505#3 --------------
consensus_8505#0 CATTTAGTCCAGAA 734
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||