These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 962 fasta sequence [CCGNAGGCCATTAATTCGGCACGCAGGTTTAAATACAAATGTCAAGACAGTTCTTCTGTATGGGGTGGGAACCTGGAGAACTACGAAAACCATCATCCAGAAGATATAAGTGTTTATTTACAGTTGTCTACTCAAATTACTTCGGATCCATTGGCTAGATACTATCTGAAACATTCCACTGTGGGAGAGAACAAACCAGATTCCAGCGGAGGAAGAAGCGCTGAAAGTGGGTTGGGCACACTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGGAGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGATACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCATCATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGAATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTATTGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAAAGCTTCTTTTGTCATGAATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTAGCTTGTCCATTGTTACTTTCCTTTTTTGGTTCTGGCTCTNTCTTTTCCCTTTCCCTT-CACAGTTTGTACTTTT-ATAATGCCCCATTTG-CCTAGTTTTCC-TTTGTTGNGCATTNTGCTTA-TTATATNTTG-TTTAACTTT-AAGCATCGNNGTG-TTATCTGGTTG-TTATTTT-ATCTTT-ATAAATTT] [+] EMBL CD081796 [CCGNAGGCCATTAATTCGGCACGCAGGTTTAAATACAAATGTCAAGACAGTTCTTCTGTATGGGGTGGGAACCTGGAGAACTACGAAAACCATCATCCAGAAGATATAAGTGTTTATTTACAGTTGTCTACTCAAATTACTTCGGATCCATTGGCTAGATACTATCTGAAACATTCCACTGTGGGAGAGAACAAACCAGATTCCAGCGGAGGAAGAAGCGCTGAAAGTGGGTTGGGCACACTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGGAGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGATACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCATCATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGAATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTATTGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAAAGCTTCTTTTGTCATGAATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTAGCTTGTCCATTGTTACTTTCCTTTTTTGGTTCTGGCTCTNTCTTTTCCCTTTCCCTT CACAGTTTGTACTTTT ATAATGCCCCATTTG CCTAGTTTTCC TTTGTTGNGCATTNTGCTTA TTATATNTTG TTTAACTTT AAGCATCGNNGTG TTATCTGGTTG TTATTTT ATCTTT ATAAA ] [-] EMBL CD075527 [ GCTGAAAGTGGGTTGGGCACACTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGGAGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGATACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCATCATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGAATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTATTGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAAAGCTTCTTTTGTCATGAATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTAGCTTGTCCATTGTTACTTTCCTTTTTTGGTTCTGGCTCTTTCTTTTCCCTTTCCCTTCCACAGTTTGTACTTTTAATAATGCCCAATTTGTCCTAGTTTTCCTTTTGTTGTGCATTTTGCTTATTTATATTTTGTTTTAACTTTAAAGCATCGTGTTGTTTATCTGTTTGTTTATTTTGATCTTTAATAAATTT] consensusID : consensus_8506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 583 fasta sequence [TCTGAAGATGAAATTAATAAACAACTTGCTGATAAGGAACGTGTAGCAGCTGCTCTAGAAAATCCTGCTCTACTTAAACTAGTGAATAATTGTCTAGCAATTCAAAATGAGTAAAGTATATTTCACATGACCCTGT-TCATTCACTTGCCATTCCTTGTAAATAACAATACATATCTATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGT-GAATCAACAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAAACTGTAATCTTGCCTTTTGAGGTCAAACTTGTCTGCTCATTTTTCAACTATTTTGTTAATTTAAACTGGTGACAATTTTCTATTTAGTCCTCAGTTTTACACAAACTAGATCATTCACGTTGCACAATTAAACCA] [-] EMBL CD075748 [TCTGAAGATGAAATTAATAAACAACTTGCTGATAAGGAACGTGTAGCAGCTGCTCTAGAAAATCCTGCTCTACTTAAACTAGTGAATAATTGTCTAGCAATTCAAAATGAGTAAAGTATATTTCACATGACCCTGT TCATTCACTTGCCATTCCTTGTAAATAACAATACATATCTATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGT GAATCAACAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAAACTGTAATCTTGCCTTTTGAGGTCAAACTTGTCTGCTCATTTTTCAACTATTTTGTTAATTTAAACTGGTGACAATTTTCTATTTAGTCCTCAGTTTTACACAAACTAGATCATTCACGTTGCACAATTAAACCA] [+] EMBL CD126189 [ ATTTCACAT ACCCTGTGTCATTCACTTGCCATTCCTTGTAAATTACAATACATATCTATTAACTGACAGATATTCTGGCATCTATTTCATAAATTCTTGTATATTGTTGTAGAATCAACAGTAATTCAAATGTACTTTAGAAAACTTACTTACTCACGTCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAAACTGTAATCTTGCCTTTTGAGGTCA ] [+] EMBL CD063115 [ TTTCACATGACCCTGT TCATTCACTTGCCATTCCTTGTAAATAACAATACATATCTATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGT GAATCAACAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACTAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAA ] consensusID : consensus_8506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TAACACAGGCGCAAGTTAATCAGTTGGAAGATATGATAGTACAGTATGAGACCTGGTTGAACCAGCAAATGATGCAACAAAATCCTCGACCACAAACTTCAGATCCTGTAGTTAAAGTTACAGATATCATATCTCAACAGCAAGCCATGGAATCAGTGTGTCATCCCATTATCAATGCTCCATAATCTCCAAATGGTCGTGATATCTCCAGATGACTTCCAGCAACGCTAATTCGGTTGCTCGGCATATGTGTGTCCAGGTTAGTGGACCCGAAAAGGGAAAGTTCATGACCCATCAAGTTCGAA] [+] EMBL CD126004 [TAACACAGGCGCAAGTTAATCAGTTGGAAGATATGATAGTACAGTATGAGACCTGGTTGAACCAGCAAATGATGCAACAAAATCCTCGACCACAAACTTCAGATCCTGTAGTTAAAGTTACAGATATCATATCTCAACAGCAAGCCATGGAATCAGTGTGTCATCCCATTATCAATGCTCCATAATCTCCAAATGGTCGTGATATCTCCAGATGACTTCCAGCAACGCTAATTCGGTTGCTCGGCATATGTGTGTCCAGGTTAGTGGACCCGAAAAGGGAAAGTTCATGACCCATCAAGTTCGAA] consensusID : consensus_8506#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [GAGCGAGTGCGTATCTGTGTGTTGAGCTATTTCCTACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGTTTTAATGTGTTTTGTCGCCTTTGCTTAATAGTTGATAATTTTGTGTGTTTTACTTCCTCTTCTTCTTCTTCTCCCTC] [+] EMBL CD087979 [GAGCGAGTGCGTATCTGTGTGTTGAGCTATTTCCTACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGTTTTAATGTGTTTTGTCGCCTTTGCTTAATAGTTGATAATTTTGTGTGTTTTACTTCCTCTTCTTCTTCTTCTCCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8506#0 CCGNAGGCCATTAATTCGGCACGCAGGTTTAAATACAAATGTCAAGACAGTTCTTCTGTA 60 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 ------------------------------------------------------------ consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 TGGGGTGGGAACCTGGAGAACTACGAAAACCATCATCCAGAAGATATAAGTGTTTATTTA 120 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 ------------------------------------------------------------ consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 CAGTTGTCTACTCAAATTACTTCGGATCCATTGGCTAGATACTATCTGAAACATTCCACT 180 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 ------------------------------------------------------------ consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 GTGGGAGAGAACAAACCAGATTCCAGCGGAGGAAGAAGCGCTGAAAGTGGGTTGGGCACA 240 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 ------------------------------------------------------------ consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 CTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCC 300 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 ------------------------------------------------------------ consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 AAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAA 360 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 ------------------------------------------------------------ consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 GAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGG 420 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 -----TCTGAAGATGAAATTAATAAACAACTTGCTGATAAGGAACGTGTAGCAGCTGCTC 55 consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 AGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGA 480 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 TAGAAAATCCTGCTCTACTTAAACTAGTGAATAATTGTCTAGCAATTCAAAATGAGTAAA 115 consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 TACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCAT 540 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 GTATATTTCACATGACCCTGTTCATTCACTTGCCATTCCTTGTAAATAACAATACATATC 175 consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 CATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGA 600 consensus_8506#3 ------------------------------------------------------------ consensus_8506#1 TATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGTGAATCA 235 consensus_8506#2 ------------------------------------------------------------ consensus_8506#0 ATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTAT 660 consensus_8506#3 ---------------------------------------------------------GAG 3 consensus_8506#1 A---CAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTG 292 consensus_8506#2 ------------------------------------TAACACAGGCGCAAGTTAATCAGT 24 consensus_8506#0 TGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAA 720 consensus_8506#3 CGAGTGCGTAT--CTGTGT-GTTGAGCTATT-------TCCTACCGGTTGATGTTGGTGC 53 consensus_8506#1 GAGGAGCATAGG-CCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTC 351 consensus_8506#2 TGGAAG-ATATGATAGTACAGTATGAGACCT-----GGTTGAACCAGCAAATGATGCAAC 78 * ** * * consensus_8506#0 AGCTTCTTTTGTCATGA-ATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTA 779 consensus_8506#3 TGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGT 113 consensus_8506#1 CAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAA 411 consensus_8506#2 AAAATCCTCGACCACAA-ACTTCAGATCCTGTAGTTAAAGTTACAGATATCATATCTCAA 137 * * * * * consensus_8506#0 GCTTGTCCATTGTTACTTTCCT-----TTTTTGGTTCTGGCTCTNTCTTTTCCCTTTC-C 833 consensus_8506#3 TACTGGGTAGAACTAATCGACT-----CCTAAAATT-TGTGACTAGTGGTATCATGTG-T 166 consensus_8506#1 TCTTAAGTATTTAAGTTTTAGAAA-AGTTTGTAATT-AAACTGTAATCTTGCCTTTTG-A 468 consensus_8506#2 CAGCAAGCCATGGAATCAGTGTGTCATCCCATTATCAATGCTCCATAATCTCCAAATGGT 197 * * * consensus_8506#0 CTTCACAGTTTGTACTTTTATAATGCCCCATTTGCCTAGTTTTCCTTTGTTGNGCATTNT 893 consensus_8506#3 GGTGGTAGTGTTTTAATGTGTTTTGTCGCCTTTGCTTAATA-------GTTGATAATTTT 219 consensus_8506#1 GGTCAAACTTGTCTGCTCATTTTTCAACTATTTTGTTAATTTAAACT-GGTGACAATTTT 527 consensus_8506#2 CGTGATATCTCCAGATGACTTCCAGCAACGCTAATTCGGTT-------GCTCGGCAT-AT 249 * * * * * * * ** * consensus_8506#0 GCTTATTATATNTTGTTTAACTTTAAGCATCGNNGTGTTATCTGGTTGTTATTTTATCTT 953 consensus_8506#3 GTGTGTTTTACTTCCTCTTCTTCTTCTTCTCCCTC------------------------- 254 consensus_8506#1 CTATTTAGTCCTCAGTTTTACACAAACTAGATCATTCACGTTGCACAATTAAACCA---- 583 consensus_8506#2 GTGTGTCCAGGTTAGTGGACCCGAAAAGGGAAAGTTCATGACCCATCAAGTTCGAA---- 305 * * * consensus_8506#0 TATAAATTT 962 consensus_8506#3 --------- consensus_8506#1 --------- consensus_8506#2 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||