cluster # 8507

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Schistosoma mansoni
cluster # 8507 cluster # 8507 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8507#0 length = 499 sequences # 3

consensus_8507#1 length = 402 sequences # 1
consensus_8507#2 length = 355 sequences # 3

consensusID : consensus_8507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 499
fasta sequence

                              [CAGATGTATTCACATTACCTTGCTGACCAACTAGACAATCACCTGGGCGTACACCTTCACCAGTCTTGCTGCTGCTATCGTTATTAGTATTATTGTCATTGTCACTTATAAACTTTCTCGTTTGCACAGGTGGTGATTGTTCAGCTCTTTTCGTTCCAGTTATTACATTTGTACCGATTCGTCTACCACTACTACTGATACTATTTAAATGCATACCACGTGTATTCGCCGGATCAAGACGGTTGTTGACAATCATTGTGTGTTGGTTATTACACATATAGTTTTTACTACCAACAATACCACTGTTGTAACCAGTACTTGTGTTGTTAGCTAAAAACTTTTCGCGTATAAATTGAGGTGGGAAGTCAAGCAAAGATGCGATCTTCCGTAGTTTCGTTTGTTCAACGACTGTTTTACCACGGGACAATAATTGCCGAGCTGTCATACAACGTATATGATCTTCAAATAGAAACTTTGCAACCATAATCGGCGATTTACT]

[+] EMBL CD197313             [CAGATGTATTCACATTACCTTGCTGACCAACTAGACAATCACCTGGGCGTACACCTTCACCAGTCTTGCTGCTGCTATCGTTATTAGTATTATTGTCATTGTCACTTATAAACTTTCTCGTTTGCACAGGTGGTGATTGTTCAGCTCTTTTCGTTCCAGTTATTACATTTGTACCGATTCGTCTACCACTACTACTGATACTATTTAAATGCATACCACGTGTATTCGCCGGATCAAGACGGTTGTTGACAATCATTGTGTGTTGGTTATTACACATATAGTTTTTACTACCAACAATACCACTGTTGTAACCAGTACTTGTGTTGTTAGCTAAAAACTTTTCGCGTATAAATT AGGTGGGAAGTCAAGCAAAGATGCGATCTTCCGTAGTTTCGTTTGTTCAACGACTGTTTTACCACGGGACAATAATTGC                                                                 ]
[+] EMBL CD113477             [                                                                                                                                          GTTCAGCTCTTTTCGTTCCAGTTATTACATTTGTACCGATTCGTCTACCACTACTACTGATACTATTTAAATGCATACCACGTGTATTCGCCGGATCAAGACGGGGGGGGACAATCATTGTGTGTTGGTTATTACACATATAGTTTTTACTACCAACAATACCACTGTTGTAACCAGTACTTGTGTTGTTAGCTAAAAACTTTTCGCGTATAAATTGAGGTGGGAAGTCAAGCAAAGATGCGATCTTCCGTAGTTTCGTTTGTTCAACGACTGTTTTACCACGGGACAATAATTGCCGAGCTGTCATACAACGTATATGATCTTCAAATAGAAACTTTGCAACCATAATCGGCGATTTAC ]
[-] EMBL CD113279             [                                                                                                                                                          TCCAGTTATACCATTTGTACCGATTCGTCTACCACTACTACTGATACTATTTAAATGCATACCACGTGTATTCGCCGGATCAAGACGGTTGTTGACAATCATTGTGTGTTGGTTATTACACATATAGTTTTTACTACCAACAATACCACTGTTGTAACCAGTACTTGTGTTGTTAGCTAAAAACTTTTCGCGTATAAATTGAGGTGGGAAGTCAAGCAAAGATGCGATCTTCCGTAGTTTCGTTTGTTCAACGACTGTTTTACCACGGGACAATAATTGCCGAGCTGTCATACAACGTATATGATCTTCAAATAGAAACTTTGCAACCATAATCGGCGATTTACT]




>consensus_8507#0
CAGATGTATTCACATTACCTTGCTGACCAACTAGACAATCACCTGGGCGTACACCTTCAC
CAGTCTTGCTGCTGCTATCGTTATTAGTATTATTGTCATTGTCACTTATAAACTTTCTCG
TTTGCACAGGTGGTGATTGTTCAGCTCTTTTCGTTCCAGTTATTACATTTGTACCGATTC
GTCTACCACTACTACTGATACTATTTAAATGCATACCACGTGTATTCGCCGGATCAAGAC
GGTTGTTGACAATCATTGTGTGTTGGTTATTACACATATAGTTTTTACTACCAACAATAC
CACTGTTGTAACCAGTACTTGTGTTGTTAGCTAAAAACTTTTCGCGTATAAATTGAGGTG
GGAAGTCAAGCAAAGATGCGATCTTCCGTAGTTTCGTTTGTTCAACGACTGTTTTACCAC
GGGACAATAATTGCCGAGCTGTCATACAACGTATATGATCTTCAAATAGAAACTTTGCAA
CCATAATCGGCGATTTACT

consensusID : consensus_8507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [ATGGTCACATGAAGACAACGACTATCAGCTGGATCACAATGAGATTCCAAATCCTGTAATGGTCCAATGAATGTTATGACACCCCAACCAAGTTGTTTTGAGTCAGGTTTTACCAGAACCAACTGCTGACCACAACTAACTATAAAACGTTTTTCATGACTATAATGTATATTAAAAAGGATATATACACCAAGTTAAAACACCTATTATGCATGAAGAAAGTCAAAAGAAAAGCATCAACCTCGATGTGATCATTCAAATAACAGTTTGTGCAGATTATTGAATTTCACGTTAGTTTTAACAACATATCGATATCTGTTGGAGAGCTATTGATAACGAAAGAGTATCCAACAGTTGTTTTTTTCGAGTGAACATACGAAAACACGATCATGAACGTGACCA]

[+] EMBL CD147904             [ATGGTCACATGAAGACAACGACTATCAGCTGGATCACAATGAGATTCCAAATCCTGTAATGGTCCAATGAATGTTATGACACCCCAACCAAGTTGTTTTGAGTCAGGTTTTACCAGAACCAACTGCTGACCACAACTAACTATAAAACGTTTTTCATGACTATAATGTATATTAAAAAGGATATATACACCAAGTTAAAACACCTATTATGCATGAAGAAAGTCAAAAGAAAAGCATCAACCTCGATGTGATCATTCAAATAACAGTTTGTGCAGATTATTGAATTTCACGTTAGTTTTAACAACATATCGATATCTGTTGGAGAGCTATTGATAACGAAAGAGTATCCAACAGTTGTTTTTTTCGAGTGAACATACGAAAACACGATCATGAACGTGACCA]




>consensus_8507#1
ATGGTCACATGAAGACAACGACTATCAGCTGGATCACAATGAGATTCCAAATCCTGTAAT
GGTCCAATGAATGTTATGACACCCCAACCAAGTTGTTTTGAGTCAGGTTTTACCAGAACC
AACTGCTGACCACAACTAACTATAAAACGTTTTTCATGACTATAATGTATATTAAAAAGG
ATATATACACCAAGTTAAAACACCTATTATGCATGAAGAAAGTCAAAAGAAAAGCATCAA
CCTCGATGTGATCATTCAAATAACAGTTTGTGCAGATTATTGAATTTCACGTTAGTTTTA
ACAACATATCGATATCTGTTGGAGAGCTATTGATAACGAAAGAGTATCCAACAGTTGTTT
TTTTCGAGTGAACATACGAAAACACGATCATGAACGTGACCA

consensusID : consensus_8507#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 355
fasta sequence

                              [CCAAATGATTTATTTCCCAGTCTNGTTGGTATACCTGGATAAGGTGGATTTTGTAGTATACCAGATCCTAAATCAATTACACCTGCATTAAAGACAGGAGATAGACTAGATCTATTCTCTGAAACCCTGATTGGATGTACAGTGGAATGTTCTGGCATTCATGAAAAACGTTTTATAGTTAGTTGTGGTCAGCAGTTGGTTCTGGTAAAACCTGACTCAAAACAACTTGGTTGGGGTGTCATAACATTCATTGGACCATTACAGGATTTGGAATCTCATTGTGATCCAGCTGATAGTCGTTGTCTTCATGTGACCATTCATGCACCTGGCCATTTAACCTGTCAAAATTCTAGTC]

[-] EMBL CD147580             [CCAAATGATTTATTTCCCAGTCTNGTTGGTATACCTGGATAAGGTGGATTTTGTAGTATACCAGATCCTAAATCAATTACACCTGCATTAAAGACAGGAGATAGACTAGATCTATTCTCTGAAACCCTGATGGGATGTACAGTGGAATGTTCTGGCATTCATGAAAAACGTTTTATAGTTAGTTGTGGTCAGCAGTTGGTTCTGGTAAAACCTGACTCAAAACAACTTGGTTGGGGTGTCATAACATTCATTGGACCATTACAGGATTTGGAATCTCATTGTGATCCAGCTGATAGTCGTTGTCTT ATGTGACCA                                       ]
[+] EMBL CD113339             [                                                                                              CAGGAGATAGACTAGATCTATTCTCTGAAACCCTGATTGGATGTACAGTGGAATGTTCTGGCATTCATGAAAAACGTTTTATAGTTAGTTGTGGTCAGCAGTTGGTTCTGGTAAAACCTGACTCAAAACAACTTGGTTGGGGTGTCATAACATTCATTGGACCATTACAGGATTTGGAATCTCATTGTGATCCAGCTGATGGTCGTTGTCTTCATGTGACCATTCATGCACCTGGCCATTTAACCTGTCAAAATTCTAGT ]
[-] EMBL CD159323             [                                                                                                      AGACTAGATCTATTCTCTGAAACCCTGATTGGATGTACAGTGGAATGTTCTGGCATTCATGAAAAACGTTTTATAGTTAGTTGTGGTCAGCAGTTGGTTCTGGTAAAACCTGGCTCAAAACAACTTGGTTGGGGTGTCATAACATTCATTGGACCATTACAGGATTTGGAATCTCATTGTGATCCAGCTGATAGTCGTTGTCTTCATGTGACCATTCATGCACCTGGCCATTTAACCTGTCAAAATTCTAGTC]




>consensus_8507#2
CCAAATGATTTATTTCCCAGTCTNGTTGGTATACCTGGATAAGGTGGATTTTGTAGTATA
CCAGATCCTAAATCAATTACACCTGCATTAAAGACAGGAGATAGACTAGATCTATTCTCT
GAAACCCTGATTGGATGTACAGTGGAATGTTCTGGCATTCATGAAAAACGTTTTATAGTT
AGTTGTGGTCAGCAGTTGGTTCTGGTAAAACCTGACTCAAAACAACTTGGTTGGGGTGTC
ATAACATTCATTGGACCATTACAGGATTTGGAATCTCATTGTGATCCAGCTGATAGTCGT
TGTCTTCATGTGACCATTCATGCACCTGGCCATTTAACCTGTCAAAATTCTAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8507#0      CAGATGTATTCACATTACCTTGCTGACCAACTAGACAATCACCTGGGCGTACACCTTCAC 60
consensus_8507#2      ------------------------------------------------------------
consensus_8507#1      ------------------------------------------------------------
                                                                                  

consensus_8507#0      CAGTCTTGCTGCTGCTATCGTTATTAGTATTATTGTCATTGTCACTTATAAACTTTCTCG 120
consensus_8507#2      ------------------------------------------------------------
consensus_8507#1      -------------------------------------ATGGTCACATGAAGACAACGACT 23
                                                                                  

consensus_8507#0      TTTGCACAGGTGGTGATTGTTCAGCTCTTTTCGTTCCAGTTATTACATTTGTACCGATTC 180
consensus_8507#2      -----CCAAATGATTTATTTCCCAGTCTNGTTGGTATACCTGGATAAGGTGGATTTTGTA 55
consensus_8507#1      ATCAGCTGGATCACAA---TGAGATTCCAAATCCTGTAATGGTCCAA--TGAATGTTATG 78
                                *        *     **       *  *        *  ** *     * 

consensus_8507#0      GTCTACCACTACTACTGATACTATTTAAATGCATACCACGTGTATTCGCCGGATCAAGAC 240
consensus_8507#2      GTATACCA--GATCCTAA-ATCAATTACACCTGCATTAAAGACAGGAGATAGACTAGATC 112
consensus_8507#1      ACACCCCAACCAAGTTGTTTTGAGTCAGGTTT-TACCAGAACCAACTGCTGACCACAACT 137
                           ***       *      * * *       *  *     *   *            

consensus_8507#0      GGTTGTTGACAATC---ATTGTGTGTTGGTTATTACACATATAGTTTTTACTACCAACAA 297
consensus_8507#2      TATTCTCTGAAACCCTGATTGGATGTACAGTGGAATGT-TCTGGCATTCATGAAAAACGT 171
consensus_8507#1      AACTATAAAACGTTTTTCATGACTATAATGTATATTAAAAAGGATATATAC-ACCAA-GT 195
                         * *             **  * *    *               *  *  *  **   

consensus_8507#0      T--ACCACT-GTTGTAACCAGTACTTGTGTTGTTAGCTAAAAACTTTTCGCG---TATAA 351
consensus_8507#2      TTTATAGTTAGTTGTGGTCAGCAGTTG-GTT-CTGGT--AAAACCTGACTCA---AAACA 224
consensus_8507#1      TAAAACACCTATTATG--CATGAAGAAAGTCAAAAGAAAAGCATCAACCTCGATGTGATC 253
                      *  *       ** *   **  *     **     *   *  *     * *         

consensus_8507#0      ATTGAGGTGGGAAGTCA-AGCAAAGATGCGATCTT-CCGTAGTTTCGTTTGTTCAACGAC 409
consensus_8507#2      ACTTGGTTGGGGTGTCATAACATTCATTGGACCAT-TACAGGATTTGGAATCTCATTG-- 281
consensus_8507#1      ATTCAAATAACAGTTTGTGCAGATTATTGAATTTCACGTTAGTTTTAACAACATATCGA- 312
                      * *    *      *          **   *          * **         *  *  

consensus_8507#0      TGTTTTACCACGGGACAATAATTGCCGAGCTGTCATACAACGTATATGATCTTCAAATAG 469
consensus_8507#2      TGATCCAGCTGATAGTCGTTGTCTTCATGTGACCATTCA-TGCACCTGGCCATTTAAC-- 338
consensus_8507#1      -TATCTGTTGGAGAGCTATTGATAACGAAAGAGTATCCAACAGTTGTTTTTTTCGAGT-G 370
                         *              *      *        ** **       *     *  *    

consensus_8507#0      AAACTTTGCAACCATAATCGGCGATTTACT-- 499
consensus_8507#2      --CTGTCAAAATTCTAGTC------------- 355
consensus_8507#1      AACATACGAAAACACGATCATGAACGTGACCA 402
                               **      **