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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1104 fasta sequence
[TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTGTGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTTATTATGAGATCACAACGT-GTCGATATATCATCACTGAATCTGTCTGTCG-TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCAAGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNNNTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGCGTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACACTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTATACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTCCCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGCNNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAGTATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATCTAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCTTTTCATCTCATATGGAAATATATG]
[-] EMBL CD060016 [TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTGTGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTTATTATGAGATCACAACGT GTCGATATATCATCACTGAATCTGTTTGTCGTTTCCAA ]
[+] EMBL CD081053 [ GATCACAACGTNGTCGATATATCATCACTGAATCTGTCTGTCG TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCAAGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNNNTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGCGTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACACTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTATACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTCCCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGCNNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAGTATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATCTAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCTTTTCATCTCATATGGAAATATATG]
[-] EMBL CD161486 [ ATATATCATCACTGAATCTGTCTGTCG TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTT ]
consensusID : consensus_8509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 566 fasta sequence
[CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGACAAGAGCGTTCCGGACACCACAAGAA]
[+] EMBL BG932000 [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCG ]
[-] EMBL BF936419 [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGACAAGAGCGTTCCGGACACCACAAGAA]
[+] EMBL BG931984 [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATG ]
consensusID : consensus_8509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence
[GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC]
[+] EMBL BG930421 [GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACT 60
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 ACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGT 120
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 TCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTAC 180
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 TGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTG 240
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 TGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTT 300
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 ATTATGAGATCACAACGTGTCGATATATCATCACTGAATCTGTCTGTCGTTCCAACCTGC 360
consensus_8509#1 ------------------------------------------------------------
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 CTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAA 420
consensus_8509#1 --------------------------------------------CCCGCCGTTTACCCGC 16
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 ACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGA 480
consensus_8509#1 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 76
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 ACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCA 540
consensus_8509#1 AAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGAC---AGTCGGATTCCCCTG 133
consensus_8509#2 ------------------------GTATTGTGATCGACGGAG---GGTCTTCTTTCCCCG 33
consensus_8509#0 AGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNN 600
* * * **
consensus_8509#1 GT--CCGTGCCAGTTCTGAG---TTAGCCGTCGCG-CGCCAGACCATGGAAG-TACAGCC 186
consensus_8509#2 GTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA---TAGGGAC 90
consensus_8509#0 NTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGC 660
* ** ** * ** * * * ** *
consensus_8509#1 G-----CTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACA 241
consensus_8509#2 A-----GTGGGAATCTCGTT-AATCCATTCATGCGCGTCACTAATTAGATGAC------- 137
consensus_8509#0 GTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACA 720
* * ** * ** * * *
consensus_8509#1 GCTGAAACCGCCCACGATC---GACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGC 298
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 CTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTAT 780
consensus_8509#1 ACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATC 358
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 ACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTC 840
consensus_8509#1 TCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTT 418
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 CCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGC 900
consensus_8509#1 GCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCT 478
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 NNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAG 960
consensus_8509#1 GCGGATATGGGTACGGCCTGCCA-CGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGC 537
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 TATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATC 1020
consensus_8509#1 CGACAAGAGCGTTCCGGACACCACAAGAA------------------------------- 566
consensus_8509#2 ------------------------------------------------------------
consensus_8509#0 TAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCT 1080
consensus_8509#1 ------------------------
consensus_8509#2 ------------------------
consensus_8509#0 TTTCATCTCATATGGAAATATATG 1104
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||