cluster # 8516

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Schistosoma mansoni
cluster # 8516 cluster # 8516 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8516#0 length = 556 sequences # 4

consensus_8516#1 length = 418 sequences # 2
consensus_8516#2 length = 224 sequences # 1

consensusID : consensus_8516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 556
fasta sequence

                              [AAACTTAACACAAAGGAAGATAAAGATGAAATAAGATAGGGAATGAAGGAGAAACGCATCGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTTAAAT-A-TTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACAAAAAAGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATAGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTCTTGCTCATTTGATGATAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCTCTTTGATGTTTTACAATTATATAAAAAGTTT]

[+] EMBL CD196976             [AAACTTAACACAAAGGAAGATAAAGATGAAATAAGATAGGGAATGAAGGAGAAACGCATCGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTTAAAT A TTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACGAAAAAGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATTGCAATCATATTACTACTTTAATGAAACTCAC                                                                                                        ]
[+] EMBL CD070106             [                                                           CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCA TTTTTTAAAT A TTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAANAGAGTGAGCATAANANAAAGAAACAAAAAGAAAACACACCACAGAAATATTGGAGAAAAAGCAAC ATTGTA                                                                                                                                                                                                                    ]
[+] EMBL CD069714             [                                                                                           gatgaTGTA  GAAAATG ATGAGTTCATATGAGATGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAGCAAAAAAGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATAGCAATCATATAAT                                                                                                                          ]
[-] EMBL CD140093             [                                                                                                                                                                                                       TTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACAAAAAAGGAAACACACCACTCAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATAGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTCTTGCTCATTTGATGATAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCTCTTTGATGTTTTACAATTATATAAAAAGTTT]




>consensus_8516#0
AAACTTAACACAAAGGAAGATAAAGATGAAATAAGATAGGGAATGAAGGAGAAACGCATC
GAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTTAA
ATATTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAAT
ATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATA
TTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACAAAAA
AGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTA
TAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGAT
AGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTCTTGCTCATTTGATGA
TAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCTCTTTGATGTTTTACA
ATTATATAAAAAGTTT

consensusID : consensus_8516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAAGAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGTTTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTTTCAACCTAGATAGTGTAAAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATATCATAGATACAGAAGTGATAGGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCAGAAGGGGTTTTGTGGAGATTTCAGTATTTTTCATGGTTGAAATCATGAGTCGATTGAAGCTAGACCACCATGGGAAACCTGAAAACACT]

[+] EMBL CD093412             [ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAAGAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGTTTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTTTCAACCTAGATAGTGTAAAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATATCATAGATACAGAAGTGATAGGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCAGAAGGGGTTTTGTGGAGATTTCAGTATTTTTCATGGTTGAAATCATGAGTCGATTGAAGCTAGACCACCATGGGAAACCTGAAAACACT]
[+] EMBL CD093404             [ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAAGAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGTTTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTGTCAACCTTGATAGTGTACAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATATCATAGATACAGAAGTGATAAGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCAGAAcg                                                                                    ]




>consensus_8516#1
ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAA
GAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGT
TTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTTTC
AACCTAGATAGTGTAAAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATA
TCATAGATACAGAAGTGATAGGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGT
AATGACCGCCGTTCAAATCAACATTATCAGAAGGGGTTTTGTGGAGATTTCAGTATTTTT
CATGGTTGAAATCATGAGTCGATTGAAGCTAGACCACCATGGGAAACCTGAAAACACT

consensusID : consensus_8516#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCTCAATACACTGTGTCTAACCTCACTATTATCAACCTTAGAAATACTTCATCTCATGTCAACATCAGGATTACTTAAAATATTGATCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC]

[+] EMBL CD159709             [GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCTCAATACACTGTGTCTAACCTCACTATTATCAACCTTAGAAATACTTCATCTCATGTCAACATCAGGATTACTTAAAATATTGATCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC]




>consensus_8516#2
GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAA
GATTCATGACCTCATCAACTGATTTACCATCATTCCTCAATACACTGTGTCTAACCTCAC
TATTATCAACCTTAGAAATACTTCATCTCATGTCAACATCAGGATTACTTAAAATATTGA
TCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8516#0      ------------AAACTTAACACAAAGG-AAGATAAAGATGAAATAAGATAGGGAATGAA 47
consensus_8516#2      GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAA 60
consensus_8516#1      -------ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGAT 53
                                  *   *     ** *   *  * *      **  *         **** 

consensus_8516#0      GGAGAAACGCATCGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAA 107
consensus_8516#2      GATTCATGACCTC-ATCAACTGATTTAC---CATCATTCCTCAATACACTGTGTCTAACC 116
consensus_8516#1      CAATAAAGAGATTCGGTAACT--TCTAA----------AACATATTCCTAGTCTTGAA-- 99
                           *     *      * *  * **                ** *   ** *  **  

consensus_8516#0      TGCATTTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCT 167
consensus_8516#2      T-CACTATTATCAACCTTAGAAATACTTCATCTCAT-GTCAACATCAGGATTACTTAAAA 174
consensus_8516#1      ---ATGGTTGGGAAA--CGAATGTGTTTAAATTAAGCTTTAA----AGGAAGAACTAGTT 150
                         *   **   **      *  *   *    * *   * *     ** *     *    

consensus_8516#0      TGACAATTACAATATTATTGTAT-TTATTCTTTGGCCTTTAATTGATCACGCCAATCCTC 226
consensus_8516#2      TATTGATCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC---------- 224
consensus_8516#1      AGCCACTTATTGGATCATTTCAGGTGTTTCAACCTAGATAGTGTAAAAACTGTGGTTAAA 210
                            * *    *  *    *  *  **              * *   *          

consensus_8516#0      TTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAA 286
consensus_8516#2      ------------------------------------------------------------
consensus_8516#1      ACTTCCGAATTATGCG-ATATTTAGAAAATATCATAGATACAGAAGTGATAGGAAGAGAT 269
                                                                                  

consensus_8516#0      AAAAAGAACAAAAAAGAAAACACACCACAAAAAT-ATTGGAGAAAAAGCAACAATTGTAA 345
consensus_8516#2      ------------------------------------------------------------
consensus_8516#1      CAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCA 329
                                                                                  

consensus_8516#0      ATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATG 405
consensus_8516#2      ------------------------------------------------------------
consensus_8516#1      GAAGGGGTTTTGTGGAGATTTCAGTATTTTTCATGGTTGAAATCATGAGTCGATTGAAGC 389
                                                                                  

consensus_8516#0      CATCTGGTTACAGATAGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTC 465
consensus_8516#2      ------------------------------------------------------------
consensus_8516#1      TAGACCACCATGGGAAACCTGAAAACACT------------------------------- 418
                                                                                  

consensus_8516#0      TTGCTCATTTGATGATAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCT 525
consensus_8516#2      ------------------------------------------------------------
consensus_8516#1      ------------------------------------------------------------
                                                                                  

consensus_8516#0      CTTTGATGTTTTACAATTATATAAAAAGTTT 556
consensus_8516#2      -------------------------------
consensus_8516#1      -------------------------------