These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 556 fasta sequence [AAACTTAACACAAAGGAAGATAAAGATGAAATAAGATAGGGAATGAAGGAGAAACGCATCGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTTAAAT-A-TTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACAAAAAAGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATAGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTCTTGCTCATTTGATGATAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCTCTTTGATGTTTTACAATTATATAAAAAGTTT] [+] EMBL CD196976 [AAACTTAACACAAAGGAAGATAAAGATGAAATAAGATAGGGAATGAAGGAGAAACGCATCGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTTAAAT A TTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACGAAAAAGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATTGCAATCATATTACTACTTTAATGAAACTCAC ] [+] EMBL CD070106 [ CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCA TTTTTTAAAT A TTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAANAGAGTGAGCATAANANAAAGAAACAAAAAGAAAACACACCACAGAAATATTGGAGAAAAAGCAAC ATTGTA ] [+] EMBL CD069714 [ gatgaTGTA GAAAATG ATGAGTTCATATGAGATGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCTTGACAATTACAATATTATTGTATTTATTCTTTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAGCAAAAAAGAAAACACACCACAAAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATAGCAATCATATAAT ] [-] EMBL CD140093 [ TTGGCCTTTAATTGATCACGCCAATCCTCTTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAAAAAAAGAACAAAAAAGGAAACACACCACTCAAATATTGGAGAAAAAGCAACAATTGTAAATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATGCATCTGGTTACAGATAGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTCTTGCTCATTTGATGATAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCTCTTTGATGTTTTACAATTATATAAAAAGTTT] consensusID : consensus_8516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAAGAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGTTTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTTTCAACCTAGATAGTGTAAAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATATCATAGATACAGAAGTGATAGGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCAGAAGGGGTTTTGTGGAGATTTCAGTATTTTTCATGGTTGAAATCATGAGTCGATTGAAGCTAGACCACCATGGGAAACCTGAAAACACT] [+] EMBL CD093412 [ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAAGAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGTTTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTTTCAACCTAGATAGTGTAAAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATATCATAGATACAGAAGTGATAGGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCAGAAGGGGTTTTGTGGAGATTTCAGTATTTTTCATGGTTGAAATCATGAGTCGATTGAAGCTAGACCACCATGGGAAACCTGAAAACACT] [+] EMBL CD093404 [ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGATCAATAAAGAGATTCGGTAACTTCTAAAACATATTCCTAGTCTTGAAATGGTTGGGAAACGAATGTGTTTAAATTAAGCTTTAAAGGAAGAACTAGTTAGCCACTTATTGGATCATTTCAGGTGTGTCAACCTTGATAGTGTACAAACTGTGGTTAAAACTTCCGAATTATGCGATATTTAGAAAATATCATAGATACAGAAGTGATAAGAAGAGATCAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCAGAAcg ] consensusID : consensus_8516#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCTCAATACACTGTGTCTAACCTCACTATTATCAACCTTAGAAATACTTCATCTCATGTCAACATCAGGATTACTTAAAATATTGATCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC] [+] EMBL CD159709 [GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAAGATTCATGACCTCATCAACTGATTTACCATCATTCCTCAATACACTGTGTCTAACCTCACTATTATCAACCTTAGAAATACTTCATCTCATGTCAACATCAGGATTACTTAAAATATTGATCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8516#0 ------------AAACTTAACACAAAGG-AAGATAAAGATGAAATAAGATAGGGAATGAA 47 consensus_8516#2 GTCGTGGTAATCAGTGTTCAGGCATACGTAACACATGGCCCAACCATCTCAGCCGATGAA 60 consensus_8516#1 -------ACTTCATAGTAAGTACAAATAAAGTATAACTATCAACTACCGTTTAAGATGAT 53 * * ** * * * * ** * **** consensus_8516#0 GGAGAAACGCATCGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAA 107 consensus_8516#2 GATTCATGACCTC-ATCAACTGATTTAC---CATCATTCCTCAATACACTGTGTCTAACC 116 consensus_8516#1 CAATAAAGAGATTCGGTAACT--TCTAA----------AACATATTCCTAGTCTTGAA-- 99 * * * * * ** ** * ** * ** consensus_8516#0 TGCATTTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAGTAGATACTTTCT 167 consensus_8516#2 T-CACTATTATCAACCTTAGAAATACTTCATCTCAT-GTCAACATCAGGATTACTTAAAA 174 consensus_8516#1 ---ATGGTTGGGAAA--CGAATGTGTTTAAATTAAGCTTTAA----AGGAAGAACTAGTT 150 * ** ** * * * * * * * ** * * consensus_8516#0 TGACAATTACAATATTATTGTAT-TTATTCTTTGGCCTTTAATTGATCACGCCAATCCTC 226 consensus_8516#2 TATTGATCATAAGAAAAGCATATATTGTTTTTTTTTCCCTGATTAAAGCC---------- 224 consensus_8516#1 AGCCACTTATTGGATCATTTCAGGTGTTTCAACCTAGATAGTGTAAAAACTGTGGTTAAA 210 * * * * * * ** * * * consensus_8516#0 TTTCTACATATATATTCACATGAAGTTAATTTATTGCAAACAGAAAAGAGTGAGCATAAA 286 consensus_8516#2 ------------------------------------------------------------ consensus_8516#1 ACTTCCGAATTATGCG-ATATTTAGAAAATATCATAGATACAGAAGTGATAGGAAGAGAT 269 consensus_8516#0 AAAAAGAACAAAAAAGAAAACACACCACAAAAAT-ATTGGAGAAAAAGCAACAATTGTAA 345 consensus_8516#2 ------------------------------------------------------------ consensus_8516#1 CAAAAGTAAGATTACCGGTTGACTCATCAGTAATGACCGCCGTTCAAATCAACATTATCA 329 consensus_8516#0 ATAGGGACTAAATTATAGTCTAAGTATAAGTATAATAATGAATACATAGAAGATAAAATG 405 consensus_8516#2 ------------------------------------------------------------ consensus_8516#1 GAAGGGGTTTTGTGGAGATTTCAGTATTTTTCATGGTTGAAATCATGAGTCGATTGAAGC 389 consensus_8516#0 CATCTGGTTACAGATAGCAATCATATAATTACTTTAATGAAACTCACTGTATTATTTCTC 465 consensus_8516#2 ------------------------------------------------------------ consensus_8516#1 TAGACCACCATGGGAAACCTGAAAACACT------------------------------- 418 consensus_8516#0 TTGCTCATTTGATGATAAATGTATTTCAAAGTATCTATCAGTTAAGTTTATTGTTGTTCT 525 consensus_8516#2 ------------------------------------------------------------ consensus_8516#1 ------------------------------------------------------------ consensus_8516#0 CTTTGATGTTTTACAATTATATAAAAAGTTT 556 consensus_8516#2 ------------------------------- consensus_8516#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||